EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000013005 (Gene tree)
Gene ID: 101169885
Gene Symbol: xrn1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 32597 bases
Position: chr17:19714985-19747581
Accession: 101169885
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000016296	XRN_N	PF03159.18	3.5e-96	1	1
ENSORLP00000026980	XRN_N	PF03159.18	3.7e-96	1	1
ENSORLP00000040516	XRN_N	PF03159.18	3.8e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000047112	-	8023	XM_023965003	ENSORLP00000026980	1716 (aa)	XP_023820771	-
ENSORLT00000030689	-	8068	XM_011486585	ENSORLP00000040516	1731 (aa)	XP_011484887	-
ENSORLT00000016297	-	4947	-	ENSORLP00000016296	1648 (aa)	-	H2MCL0

Gene Model

Click here to download ENSORLG00000013005's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03008	Ribosome biogenesis in eukaryotes	KEGG
ola03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000013005's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000013005	xrn1	100	60.939	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSORLG00000013005	xrn1	93	86.792	ENSAPOG00000000622	xrn1	100	84.009	Acanthochromis_polyacanthus
ENSORLG00000013005	xrn1	93	72.204	ENSAMEG00000012538	XRN1	94	71.885	Ailuropoda_melanoleuca
ENSORLG00000013005	xrn1	93	87.131	ENSACIG00000001057	xrn1	98	87.131	Amphilophus_citrinellus
ENSORLG00000013005	xrn1	98	80.198	ENSAOCG00000014097	xrn1	100	80.198	Amphiprion_ocellaris
ENSORLG00000013005	xrn1	98	81.966	ENSAPEG00000006620	xrn1	100	82.490	Amphiprion_percula
ENSORLG00000013005	xrn1	98	82.694	ENSATEG00000009752	xrn1	99	82.884	Anabas_testudineus
ENSORLG00000013005	xrn1	97	60.663	ENSAPLG00000004905	XRN1	100	60.604	Anas_platyrhynchos
ENSORLG00000013005	xrn1	98	69.961	ENSACAG00000004985	XRN1	100	70.908	Anolis_carolinensis
ENSORLG00000013005	xrn1	100	60.585	ENSANAG00000029013	XRN1	99	73.730	Aotus_nancymaae
ENSORLG00000013005	xrn1	98	82.593	ENSACLG00000004806	xrn1	100	82.593	Astatotilapia_calliptera
ENSORLG00000013005	xrn1	98	68.645	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSORLG00000013005	xrn1	100	60.694	ENSBTAG00000011524	XRN1	100	61.786	Bos_taurus
ENSORLG00000013005	xrn1	73	38.729	WBGene00012730	xrn-1	89	36.525	Caenorhabditis_elegans
ENSORLG00000013005	xrn1	100	60.780	ENSCJAG00000001872	XRN1	100	61.312	Callithrix_jacchus
ENSORLG00000013005	xrn1	92	72.378	ENSCAFG00000007783	XRN1	94	72.378	Canis_familiaris
ENSORLG00000013005	xrn1	92	72.378	ENSCAFG00020009120	XRN1	99	76.220	Canis_lupus_dingo
ENSORLG00000013005	xrn1	97	72.378	ENSCHIG00000019192	XRN1	94	72.458	Capra_hircus
ENSORLG00000013005	xrn1	100	60.967	ENSTSYG00000002705	XRN1	100	61.503	Carlito_syrichta
ENSORLG00000013005	xrn1	57	63.158	ENSCAPG00000004604	-	99	63.322	Cavia_aperea
ENSORLG00000013005	xrn1	100	60.608	ENSCCAG00000034800	XRN1	99	78.213	Cebus_capucinus
ENSORLG00000013005	xrn1	100	60.457	ENSCATG00000041794	XRN1	100	60.882	Cercocebus_atys
ENSORLG00000013005	xrn1	100	59.933	ENSCLAG00000001451	XRN1	99	78.459	Chinchilla_lanigera
ENSORLG00000013005	xrn1	100	60.193	ENSCSAG00000011265	XRN1	100	60.438	Chlorocebus_sabaeus
ENSORLG00000013005	xrn1	52	94.805	ENSCHOG00000013961	-	54	95.833	Choloepus_hoffmanni
ENSORLG00000013005	xrn1	72	51.515	ENSCSAVG00000008584	-	93	51.616	Ciona_savignyi
ENSORLG00000013005	xrn1	96	61.429	ENSCANG00000037495	XRN1	99	78.213	Colobus_angolensis_palliatus
ENSORLG00000013005	xrn1	100	59.842	ENSCGRG00001019411	Xrn1	99	79.463	Cricetulus_griseus_chok1gshd
ENSORLG00000013005	xrn1	100	59.842	ENSCGRG00000012464	Xrn1	99	79.463	Cricetulus_griseus_crigri
ENSORLG00000013005	xrn1	98	69.364	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSORLG00000013005	xrn1	68	83.024	ENSCVAG00000013089	xrn1	99	85.500	Cyprinodon_variegatus
ENSORLG00000013005	xrn1	98	69.486	ENSDARG00000091652	xrn1	98	82.068	Danio_rerio
ENSORLG00000013005	xrn1	100	60.739	ENSDORG00000013833	Xrn1	100	60.855	Dipodomys_ordii
ENSORLG00000013005	xrn1	75	40.181	FBgn0020261	pcm	82	39.571	Drosophila_melanogaster
ENSORLG00000013005	xrn1	84	66.667	ENSETEG00000003978	XRN1	88	67.769	Echinops_telfairi
ENSORLG00000013005	xrn1	78	83.784	ENSEASG00005002687	XRN1	99	78.864	Equus_asinus_asinus
ENSORLG00000013005	xrn1	95	62.232	ENSECAG00000008301	XRN1	100	60.967	Equus_caballus
ENSORLG00000013005	xrn1	92	65.756	ENSEEUG00000011323	XRN1	92	66.244	Erinaceus_europaeus
ENSORLG00000013005	xrn1	98	71.289	ENSELUG00000000169	xrn1	100	71.347	Esox_lucius
ENSORLG00000013005	xrn1	100	58.242	ENSFCAG00000027589	XRN1	99	80.044	Felis_catus
ENSORLG00000013005	xrn1	96	71.462	ENSFALG00000007021	XRN1	94	71.462	Ficedula_albicollis
ENSORLG00000013005	xrn1	97	72.071	ENSFDAG00000020494	XRN1	99	78.145	Fukomys_damarensis
ENSORLG00000013005	xrn1	89	74.795	ENSGMOG00000006396	xrn1	88	74.959	Gadus_morhua
ENSORLG00000013005	xrn1	97	72.028	ENSGALG00000002706	XRN1	95	71.851	Gallus_gallus
ENSORLG00000013005	xrn1	98	74.674	ENSGACG00000014328	xrn1	100	74.844	Gasterosteus_aculeatus
ENSORLG00000013005	xrn1	92	70.642	ENSGAGG00000017535	XRN1	95	70.642	Gopherus_agassizii
ENSORLG00000013005	xrn1	100	60.286	ENSGGOG00000008047	XRN1	100	60.998	Gorilla_gorilla
ENSORLG00000013005	xrn1	98	79.327	ENSHBUG00000005908	xrn1	100	79.268	Haplochromis_burtoni
ENSORLG00000013005	xrn1	97	72.713	ENSHGLG00000014476	XRN1	99	78.302	Heterocephalus_glaber_female
ENSORLG00000013005	xrn1	100	60.191	ENSHGLG00100015130	XRN1	99	78.302	Heterocephalus_glaber_male
ENSORLG00000013005	xrn1	93	82.353	ENSHCOG00000014062	xrn1	99	82.353	Hippocampus_comes
ENSORLG00000013005	xrn1	98	69.441	ENSIPUG00000015229	xrn1	100	69.150	Ictalurus_punctatus
ENSORLG00000013005	xrn1	97	72.378	ENSSTOG00000013552	XRN1	99	78.549	Ictidomys_tridecemlineatus
ENSORLG00000013005	xrn1	96	71.849	ENSJJAG00000010863	Xrn1	99	78.512	Jaculus_jaculus
ENSORLG00000013005	xrn1	98	77.541	ENSKMAG00000021356	xrn1	95	86.287	Kryptolebias_marmoratus
ENSORLG00000013005	xrn1	98	76.847	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSORLG00000013005	xrn1	98	61.983	ENSLACG00000009020	XRN1	95	71.542	Latimeria_chalumnae
ENSORLG00000013005	xrn1	98	74.962	ENSLOCG00000007944	xrn1	99	75.385	Lepisosteus_oculatus
ENSORLG00000013005	xrn1	64	73.491	ENSLAFG00000015426	XRN1	99	74.157	Loxodonta_africana
ENSORLG00000013005	xrn1	100	60.514	ENSMFAG00000032599	XRN1	100	60.963	Macaca_fascicularis
ENSORLG00000013005	xrn1	100	60.514	ENSMMUG00000014038	XRN1	100	60.882	Macaca_mulatta
ENSORLG00000013005	xrn1	100	60.171	ENSMNEG00000034217	XRN1	100	60.850	Macaca_nemestrina
ENSORLG00000013005	xrn1	93	85.156	ENSMAMG00000013219	xrn1	99	85.156	Mastacembelus_armatus
ENSORLG00000013005	xrn1	98	82.535	ENSMZEG00005015099	xrn1	100	82.535	Maylandia_zebra
ENSORLG00000013005	xrn1	97	60.810	ENSMGAG00000006333	XRN1	100	60.444	Meleagris_gallopavo
ENSORLG00000013005	xrn1	100	60.182	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSORLG00000013005	xrn1	58	78.673	ENSMOCG00000008665	Xrn1	99	79.048	Microtus_ochrogaster
ENSORLG00000013005	xrn1	100	59.219	ENSMODG00000021236	XRN1	100	60.451	Monodelphis_domestica
ENSORLG00000013005	xrn1	98	75.627	ENSMALG00000004098	xrn1	100	76.051	Monopterus_albus
ENSORLG00000013005	xrn1	96	78.493	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSORLG00000013005	xrn1	100	60.216	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSORLG00000013005	xrn1	100	60.159	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSORLG00000013005	xrn1	100	60.045	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSORLG00000013005	xrn1	95	62.696	ENSMPUG00000012040	XRN1	100	61.117	Mustela_putorius_furo
ENSORLG00000013005	xrn1	100	60.023	ENSMLUG00000016885	XRN1	94	72.793	Myotis_lucifugus
ENSORLG00000013005	xrn1	58	75.079	ENSNGAG00000023964	Xrn1	99	75.238	Nannospalax_galili
ENSORLG00000013005	xrn1	96	61.396	ENSNLEG00000004726	XRN1	100	61.007	Nomascus_leucogenys
ENSORLG00000013005	xrn1	65	96.907	ENSMEUG00000014473	-	67	97.087	Notamacropus_eugenii
ENSORLG00000013005	xrn1	74	68.421	ENSOPRG00000007337	-	71	68.740	Ochotona_princeps
ENSORLG00000013005	xrn1	98	79.692	ENSONIG00000016673	xrn1	99	84.897	Oreochromis_niloticus
ENSORLG00000013005	xrn1	90	68.357	ENSOANG00000006735	XRN1	94	68.667	Ornithorhynchus_anatinus
ENSORLG00000013005	xrn1	100	60.306	ENSOCUG00000001861	XRN1	100	61.370	Oryctolagus_cuniculus
ENSORLG00000013005	xrn1	98	99.171	ENSORLG00020005559	xrn1	100	99.171	Oryzias_latipes_hni
ENSORLG00000013005	xrn1	98	99.171	ENSORLG00015022523	xrn1	100	99.171	Oryzias_latipes_hsok
ENSORLG00000013005	xrn1	98	93.846	ENSOMEG00000015397	xrn1	100	95.074	Oryzias_melastigma
ENSORLG00000013005	xrn1	100	58.609	ENSOGAG00000000170	XRN1	100	59.201	Otolemur_garnettii
ENSORLG00000013005	xrn1	97	72.458	ENSOARG00000006343	XRN1	94	72.538	Ovis_aries
ENSORLG00000013005	xrn1	100	60.790	ENSPPAG00000010180	XRN1	100	61.042	Pan_paniscus
ENSORLG00000013005	xrn1	95	63.281	ENSPPRG00000007125	XRN1	100	61.760	Panthera_pardus
ENSORLG00000013005	xrn1	100	61.777	ENSPTIG00000021081	XRN1	100	61.760	Panthera_tigris_altaica
ENSORLG00000013005	xrn1	100	60.743	ENSPTRG00000015482	XRN1	100	61.042	Pan_troglodytes
ENSORLG00000013005	xrn1	100	60.457	ENSPANG00000010638	XRN1	100	60.825	Papio_anubis
ENSORLG00000013005	xrn1	100	60.011	ENSPSIG00000018050	XRN1	95	71.059	Pelodiscus_sinensis
ENSORLG00000013005	xrn1	59	86.943	ENSPMGG00000002648	xrn1	99	85.354	Periophthalmus_magnuspinnatus
ENSORLG00000013005	xrn1	58	78.831	ENSPEMG00000020610	Xrn1	99	79.180	Peromyscus_maniculatus_bairdii
ENSORLG00000013005	xrn1	67	52.277	ENSPMAG00000002975	xrn1	99	50.549	Petromyzon_marinus
ENSORLG00000013005	xrn1	99	71.259	ENSPCIG00000028735	XRN1	99	78.797	Phascolarctos_cinereus
ENSORLG00000013005	xrn1	89	82.178	ENSPFOG00000013932	xrn1	99	82.696	Poecilia_formosa
ENSORLG00000013005	xrn1	89	82.640	ENSPLAG00000021653	xrn1	99	82.705	Poecilia_latipinna
ENSORLG00000013005	xrn1	87	82.857	ENSPMEG00000003076	xrn1	95	83.189	Poecilia_mexicana
ENSORLG00000013005	xrn1	98	80.023	ENSPREG00000021147	xrn1	100	80.722	Poecilia_reticulata
ENSORLG00000013005	xrn1	100	60.057	ENSPPYG00000014172	XRN1	100	60.730	Pongo_abelii
ENSORLG00000013005	xrn1	86	68.036	ENSPCAG00000005638	XRN1	91	67.707	Procavia_capensis
ENSORLG00000013005	xrn1	100	60.939	ENSPCOG00000013089	XRN1	99	78.391	Propithecus_coquereli
ENSORLG00000013005	xrn1	91	70.700	ENSPVAG00000016265	XRN1	83	85.549	Pteropus_vampyrus
ENSORLG00000013005	xrn1	98	80.666	ENSPNYG00000010570	xrn1	100	80.666	Pundamilia_nyererei
ENSORLG00000013005	xrn1	98	68.381	ENSPNAG00000023531	xrn1	100	68.326	Pygocentrus_nattereri
ENSORLG00000013005	xrn1	100	59.731	ENSRNOG00000042951	Xrn1	100	60.637	Rattus_norvegicus
ENSORLG00000013005	xrn1	96	62.088	ENSRBIG00000041227	XRN1	100	61.009	Rhinopithecus_bieti
ENSORLG00000013005	xrn1	70	53.261	YGL173C	XRN1	85	33.749	Saccharomyces_cerevisiae
ENSORLG00000013005	xrn1	100	61.207	ENSSBOG00000029561	XRN1	100	61.743	Saimiri_boliviensis_boliviensis
ENSORLG00000013005	xrn1	97	60.820	ENSSHAG00000016207	XRN1	94	70.427	Sarcophilus_harrisii
ENSORLG00000013005	xrn1	98	67.819	ENSSFOG00015024211	xrn1	100	67.817	Scleropages_formosus
ENSORLG00000013005	xrn1	98	78.856	ENSSMAG00000016534	xrn1	100	79.029	Scophthalmus_maximus
ENSORLG00000013005	xrn1	92	86.148	ENSSDUG00000010306	xrn1	97	87.039	Seriola_dumerili
ENSORLG00000013005	xrn1	97	85.873	ENSSLDG00000021543	xrn1	100	85.873	Seriola_lalandi_dorsalis
ENSORLG00000013005	xrn1	62	68.705	ENSSARG00000007741	-	75	68.557	Sorex_araneus
ENSORLG00000013005	xrn1	100	60.476	ENSTGUG00000008498	XRN1	94	72.125	Taeniopygia_guttata
ENSORLG00000013005	xrn1	100	71.386	ENSTRUG00000004895	xrn1	96	85.563	Takifugu_rubripes
ENSORLG00000013005	xrn1	100	69.060	ENSTNIG00000017615	xrn1	100	70.704	Tetraodon_nigroviridis
ENSORLG00000013005	xrn1	74	85.215	ENSTBEG00000003256	XRN1	82	73.046	Tupaia_belangeri
ENSORLG00000013005	xrn1	97	62.583	ENSTTRG00000012914	XRN1	100	57.755	Tursiops_truncatus
ENSORLG00000013005	xrn1	93	70.857	ENSUAMG00000001608	XRN1	99	75.158	Ursus_americanus
ENSORLG00000013005	xrn1	93	72.698	ENSUMAG00000013625	XRN1	94	72.378	Ursus_maritimus
ENSORLG00000013005	xrn1	100	58.324	ENSVPAG00000004690	XRN1	100	59.145	Vicugna_pacos
ENSORLG00000013005	xrn1	93	72.778	ENSVVUG00000024461	XRN1	98	81.081	Vulpes_vulpes
ENSORLG00000013005	xrn1	100	61.114	ENSXETG00000000619	xrn1	99	85.827	Xenopus_tropicalis
ENSORLG00000013005	xrn1	93	85.632	ENSXCOG00000007917	xrn1	96	85.714	Xiphophorus_couchianus
ENSORLG00000013005	xrn1	94	84.413	ENSXMAG00000018320	xrn1	98	85.632	Xiphophorus_maculatus