EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000013009 (Gene tree)
Gene ID: 101166304
Gene Symbol: rpusd1
Alias: -
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 3379 bases
Position: chr8:17884089-17887467
Accession: 101166304
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000016301	PseudoU_synth_2	PF00849.22	1.9e-27	1	1
ENSORLP00000028227	PseudoU_synth_2	PF00849.22	1.9e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000033357	-	2518	-	ENSORLP00000028227	304 (aa)	-	UPI0002A4A51C
ENSORLT00000016302	-	2481	XM_004071756	ENSORLP00000016301	304 (aa)	XP_004071804	H2MCL5

Gene Model

Click here to download ENSORLG00000013009's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000013009's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000013009	rpusd1	99	57.792	ENSG00000007376	RPUSD1	99	70.060	Homo_sapiens
ENSORLG00000013009	rpusd1	100	75.896	ENSAPOG00000022221	rpusd1	100	76.623	Acanthochromis_polyacanthus
ENSORLG00000013009	rpusd1	99	59.736	ENSAMEG00000007461	RPUSD1	99	59.736	Ailuropoda_melanoleuca
ENSORLG00000013009	rpusd1	99	76.923	ENSACIG00000015863	rpusd1	100	79.355	Amphilophus_citrinellus
ENSORLG00000013009	rpusd1	100	74.920	ENSAOCG00000021975	rpusd1	97	76.452	Amphiprion_ocellaris
ENSORLG00000013009	rpusd1	100	75.241	ENSAPEG00000001316	rpusd1	97	76.774	Amphiprion_percula
ENSORLG00000013009	rpusd1	100	77.097	ENSATEG00000002984	rpusd1	100	78.387	Anabas_testudineus
ENSORLG00000013009	rpusd1	77	60.000	ENSAPLG00000012316	RPUSD1	98	60.000	Anas_platyrhynchos
ENSORLG00000013009	rpusd1	98	63.087	ENSACAG00000008953	RPUSD1	99	63.087	Anolis_carolinensis
ENSORLG00000013009	rpusd1	99	57.468	ENSANAG00000024709	RPUSD1	99	57.468	Aotus_nancymaae
ENSORLG00000013009	rpusd1	99	77.170	ENSACLG00000013692	rpusd1	100	78.135	Astatotilapia_calliptera
ENSORLG00000013009	rpusd1	99	69.667	ENSAMXG00000019802	rpusd1	99	69.667	Astyanax_mexicanus
ENSORLG00000013009	rpusd1	99	60.526	ENSBTAG00000000179	RPUSD1	99	60.526	Bos_taurus
ENSORLG00000013009	rpusd1	99	56.818	ENSCJAG00000012253	RPUSD1	99	56.913	Callithrix_jacchus
ENSORLG00000013009	rpusd1	99	58.278	ENSCAFG00000019614	RPUSD1	99	58.609	Canis_familiaris
ENSORLG00000013009	rpusd1	99	58.278	ENSCAFG00020008891	RPUSD1	99	58.609	Canis_lupus_dingo
ENSORLG00000013009	rpusd1	99	60.841	ENSCHIG00000012872	RPUSD1	99	60.841	Capra_hircus
ENSORLG00000013009	rpusd1	99	58.278	ENSTSYG00000036934	RPUSD1	91	68.908	Carlito_syrichta
ENSORLG00000013009	rpusd1	99	57.947	ENSCAPG00000014219	RPUSD1	99	57.947	Cavia_aperea
ENSORLG00000013009	rpusd1	99	57.947	ENSCPOG00000034604	RPUSD1	99	57.947	Cavia_porcellus
ENSORLG00000013009	rpusd1	99	57.468	ENSCCAG00000034385	RPUSD1	99	57.468	Cebus_capucinus
ENSORLG00000013009	rpusd1	99	57.468	ENSCATG00000042983	RPUSD1	88	69.565	Cercocebus_atys
ENSORLG00000013009	rpusd1	99	57.285	ENSCLAG00000013966	RPUSD1	99	57.003	Chinchilla_lanigera
ENSORLG00000013009	rpusd1	99	57.143	ENSCSAG00000012121	RPUSD1	99	57.143	Chlorocebus_sabaeus
ENSORLG00000013009	rpusd1	98	61.130	ENSCPBG00000021101	RPUSD1	99	61.130	Chrysemys_picta_bellii
ENSORLG00000013009	rpusd1	87	62.642	ENSCANG00000028576	RPUSD1	88	69.565	Colobus_angolensis_palliatus
ENSORLG00000013009	rpusd1	99	57.947	ENSCGRG00001014253	Rpusd1	99	57.947	Cricetulus_griseus_chok1gshd
ENSORLG00000013009	rpusd1	99	57.947	ENSCGRG00000017995	Rpusd1	99	57.947	Cricetulus_griseus_crigri
ENSORLG00000013009	rpusd1	99	76.333	ENSCSEG00000018512	rpusd1	99	76.333	Cynoglossus_semilaevis
ENSORLG00000013009	rpusd1	99	77.961	ENSCVAG00000022746	rpusd1	100	77.961	Cyprinodon_variegatus
ENSORLG00000013009	rpusd1	99	68.667	ENSDARG00000060192	rpusd1	99	68.667	Danio_rerio
ENSORLG00000013009	rpusd1	99	56.908	ENSDNOG00000003721	RPUSD1	99	56.908	Dasypus_novemcinctus
ENSORLG00000013009	rpusd1	99	58.609	ENSDORG00000026656	Rpusd1	99	58.609	Dipodomys_ordii
ENSORLG00000013009	rpusd1	97	47.742	ENSEBUG00000008767	rpusd1	93	47.742	Eptatretus_burgeri
ENSORLG00000013009	rpusd1	99	57.372	ENSEASG00005018421	RPUSD1	75	57.372	Equus_asinus_asinus
ENSORLG00000013009	rpusd1	99	69.180	ENSELUG00000014307	rpusd1	89	69.180	Esox_lucius
ENSORLG00000013009	rpusd1	99	58.086	ENSFCAG00000010359	RPUSD1	99	58.086	Felis_catus
ENSORLG00000013009	rpusd1	99	64.000	ENSFALG00000003211	RPUSD1	99	64.000	Ficedula_albicollis
ENSORLG00000013009	rpusd1	99	57.980	ENSFDAG00000013398	RPUSD1	99	57.980	Fukomys_damarensis
ENSORLG00000013009	rpusd1	99	74.919	ENSFHEG00000004736	rpusd1	100	76.221	Fundulus_heteroclitus
ENSORLG00000013009	rpusd1	99	71.803	ENSGMOG00000010756	rpusd1	99	72.459	Gadus_morhua
ENSORLG00000013009	rpusd1	99	64.474	ENSGALG00000005315	RPUSD1	99	64.474	Gallus_gallus
ENSORLG00000013009	rpusd1	99	77.049	ENSGAFG00000009886	rpusd1	100	77.049	Gambusia_affinis
ENSORLG00000013009	rpusd1	99	74.757	ENSGACG00000014276	rpusd1	100	75.728	Gasterosteus_aculeatus
ENSORLG00000013009	rpusd1	98	60.465	ENSGAGG00000004181	RPUSD1	99	60.465	Gopherus_agassizii
ENSORLG00000013009	rpusd1	99	58.442	ENSGGOG00000013997	RPUSD1	88	70.435	Gorilla_gorilla
ENSORLG00000013009	rpusd1	99	77.492	ENSHBUG00000023728	rpusd1	100	78.457	Haplochromis_burtoni
ENSORLG00000013009	rpusd1	99	57.285	ENSHGLG00000002595	RPUSD1	99	57.003	Heterocephalus_glaber_female
ENSORLG00000013009	rpusd1	99	57.285	ENSHGLG00100014303	RPUSD1	99	57.003	Heterocephalus_glaber_male
ENSORLG00000013009	rpusd1	99	71.475	ENSHCOG00000002390	rpusd1	99	71.812	Hippocampus_comes
ENSORLG00000013009	rpusd1	98	67.667	ENSIPUG00000001570	rpusd1	99	67.667	Ictalurus_punctatus
ENSORLG00000013009	rpusd1	99	58.609	ENSSTOG00000004276	RPUSD1	99	58.609	Ictidomys_tridecemlineatus
ENSORLG00000013009	rpusd1	99	57.947	ENSJJAG00000015696	Rpusd1	99	57.947	Jaculus_jaculus
ENSORLG00000013009	rpusd1	100	78.361	ENSKMAG00000017287	rpusd1	100	78.431	Kryptolebias_marmoratus
ENSORLG00000013009	rpusd1	100	75.484	ENSLBEG00000013354	RPUSD1	100	76.129	Labrus_bergylta
ENSORLG00000013009	rpusd1	100	75.484	ENSLBEG00000022502	rpusd1	100	76.129	Labrus_bergylta
ENSORLG00000013009	rpusd1	99	62.951	ENSLACG00000008869	RPUSD1	99	62.951	Latimeria_chalumnae
ENSORLG00000013009	rpusd1	70	78.505	ENSLOCG00000005682	rpusd1	99	78.505	Lepisosteus_oculatus
ENSORLG00000013009	rpusd1	99	56.954	ENSLAFG00000002115	RPUSD1	99	56.954	Loxodonta_africana
ENSORLG00000013009	rpusd1	99	57.468	ENSMFAG00000003961	RPUSD1	88	69.565	Macaca_fascicularis
ENSORLG00000013009	rpusd1	99	57.468	ENSMMUG00000000842	RPUSD1	88	69.565	Macaca_mulatta
ENSORLG00000013009	rpusd1	99	57.468	ENSMNEG00000042712	RPUSD1	88	69.565	Macaca_nemestrina
ENSORLG00000013009	rpusd1	99	57.468	ENSMLEG00000030591	RPUSD1	88	69.565	Mandrillus_leucophaeus
ENSORLG00000013009	rpusd1	100	77.814	ENSMAMG00000004735	rpusd1	100	77.814	Mastacembelus_armatus
ENSORLG00000013009	rpusd1	99	77.170	ENSMZEG00005003214	rpusd1	100	78.135	Maylandia_zebra
ENSORLG00000013009	rpusd1	97	64.765	ENSMGAG00000005447	RPUSD1	99	64.765	Meleagris_gallopavo
ENSORLG00000013009	rpusd1	83	57.312	ENSMAUG00000019998	Rpusd1	96	57.312	Mesocricetus_auratus
ENSORLG00000013009	rpusd1	99	58.086	ENSMICG00000017561	RPUSD1	99	58.416	Microcebus_murinus
ENSORLG00000013009	rpusd1	99	58.609	ENSMOCG00000014082	Rpusd1	99	58.609	Microtus_ochrogaster
ENSORLG00000013009	rpusd1	99	71.382	ENSMMOG00000012569	rpusd1	99	72.549	Mola_mola
ENSORLG00000013009	rpusd1	99	62.829	ENSMODG00000016882	RPUSD1	99	62.829	Monodelphis_domestica
ENSORLG00000013009	rpusd1	100	76.527	ENSMALG00000017818	rpusd1	100	76.527	Monopterus_albus
ENSORLG00000013009	rpusd1	99	57.616	MGP_CAROLIEiJ_G0021244	Rpusd1	99	57.616	Mus_caroli
ENSORLG00000013009	rpusd1	99	58.278	ENSMUSG00000041199	Rpusd1	99	58.278	Mus_musculus
ENSORLG00000013009	rpusd1	99	57.566	MGP_PahariEiJ_G0023562	Rpusd1	99	57.566	Mus_pahari
ENSORLG00000013009	rpusd1	99	58.278	MGP_SPRETEiJ_G0022155	Rpusd1	99	58.278	Mus_spretus
ENSORLG00000013009	rpusd1	97	57.239	ENSMPUG00000015897	RPUSD1	97	58.389	Mustela_putorius_furo
ENSORLG00000013009	rpusd1	99	57.655	ENSMLUG00000001089	RPUSD1	99	57.235	Myotis_lucifugus
ENSORLG00000013009	rpusd1	99	57.616	ENSNGAG00000003595	Rpusd1	99	57.616	Nannospalax_galili
ENSORLG00000013009	rpusd1	99	77.451	ENSNBRG00000006457	rpusd1	100	77.451	Neolamprologus_brichardi
ENSORLG00000013009	rpusd1	54	48.256	ENSNLEG00000008424	-	98	48.256	Nomascus_leucogenys
ENSORLG00000013009	rpusd1	99	63.000	ENSMEUG00000016049	RPUSD1	99	63.000	Notamacropus_eugenii
ENSORLG00000013009	rpusd1	99	52.980	ENSOPRG00000008340	RPUSD1	99	52.980	Ochotona_princeps
ENSORLG00000013009	rpusd1	99	56.678	ENSODEG00000016945	RPUSD1	99	56.678	Octodon_degus
ENSORLG00000013009	rpusd1	99	77.597	ENSONIG00000015672	rpusd1	100	77.597	Oreochromis_niloticus
ENSORLG00000013009	rpusd1	100	98.355	ENSORLG00020010382	rpusd1	100	98.355	Oryzias_latipes_hni
ENSORLG00000013009	rpusd1	100	98.355	ENSORLG00015021354	rpusd1	100	98.355	Oryzias_latipes_hsok
ENSORLG00000013009	rpusd1	100	89.145	ENSOMEG00000021426	rpusd1	100	89.145	Oryzias_melastigma
ENSORLG00000013009	rpusd1	99	57.143	ENSOGAG00000003795	RPUSD1	99	57.143	Otolemur_garnettii
ENSORLG00000013009	rpusd1	99	61.238	ENSOARG00000014254	RPUSD1	99	60.984	Ovis_aries
ENSORLG00000013009	rpusd1	99	58.442	ENSPPAG00000034797	RPUSD1	88	70.435	Pan_paniscus
ENSORLG00000013009	rpusd1	99	58.086	ENSPPRG00000012389	RPUSD1	99	58.086	Panthera_pardus
ENSORLG00000013009	rpusd1	99	57.705	ENSPTIG00000008545	RPUSD1	83	67.273	Panthera_tigris_altaica
ENSORLG00000013009	rpusd1	99	58.442	ENSPTRG00000007565	RPUSD1	88	70.435	Pan_troglodytes
ENSORLG00000013009	rpusd1	99	57.468	ENSPANG00000024401	RPUSD1	88	69.565	Papio_anubis
ENSORLG00000013009	rpusd1	99	67.763	ENSPKIG00000018890	rpusd1	91	67.763	Paramormyrops_kingsleyae
ENSORLG00000013009	rpusd1	99	63.245	ENSPSIG00000013945	RPUSD1	99	63.245	Pelodiscus_sinensis
ENSORLG00000013009	rpusd1	99	71.096	ENSPMGG00000014950	rpusd1	99	71.096	Periophthalmus_magnuspinnatus
ENSORLG00000013009	rpusd1	99	57.947	ENSPEMG00000000497	Rpusd1	99	57.947	Peromyscus_maniculatus_bairdii
ENSORLG00000013009	rpusd1	99	53.420	ENSPMAG00000001563	rpusd1	99	53.094	Petromyzon_marinus
ENSORLG00000013009	rpusd1	99	64.052	ENSPCIG00000021216	-	93	64.052	Phascolarctos_cinereus
ENSORLG00000013009	rpusd1	99	76.898	ENSPFOG00000007946	rpusd1	100	76.898	Poecilia_formosa
ENSORLG00000013009	rpusd1	99	76.898	ENSPLAG00000011925	rpusd1	100	76.898	Poecilia_latipinna
ENSORLG00000013009	rpusd1	99	76.898	ENSPMEG00000002910	rpusd1	100	76.898	Poecilia_mexicana
ENSORLG00000013009	rpusd1	99	77.632	ENSPREG00000019851	rpusd1	100	77.632	Poecilia_reticulata
ENSORLG00000013009	rpusd1	99	44.371	ENSPCAG00000002258	RPUSD1	99	44.371	Procavia_capensis
ENSORLG00000013009	rpusd1	99	56.494	ENSPCOG00000022582	RPUSD1	99	56.494	Propithecus_coquereli
ENSORLG00000013009	rpusd1	99	53.571	ENSPVAG00000013104	RPUSD1	99	53.571	Pteropus_vampyrus
ENSORLG00000013009	rpusd1	99	77.492	ENSPNYG00000024076	rpusd1	100	78.457	Pundamilia_nyererei
ENSORLG00000013009	rpusd1	99	67.667	ENSPNAG00000013806	rpusd1	99	67.667	Pygocentrus_nattereri
ENSORLG00000013009	rpusd1	99	58.278	ENSRNOG00000023639	Rpusd1	99	58.278	Rattus_norvegicus
ENSORLG00000013009	rpusd1	99	58.117	ENSRBIG00000030238	RPUSD1	88	69.565	Rhinopithecus_bieti
ENSORLG00000013009	rpusd1	99	58.117	ENSRROG00000036663	RPUSD1	88	69.565	Rhinopithecus_roxellana
ENSORLG00000013009	rpusd1	99	58.609	ENSSBOG00000033063	RPUSD1	99	58.940	Saimiri_boliviensis_boliviensis
ENSORLG00000013009	rpusd1	99	63.333	ENSSHAG00000013500	RPUSD1	99	63.333	Sarcophilus_harrisii
ENSORLG00000013009	rpusd1	98	70.234	ENSSFOG00015014394	rpusd1	99	70.234	Scleropages_formosus
ENSORLG00000013009	rpusd1	99	77.670	ENSSMAG00000008045	rpusd1	93	77.670	Scophthalmus_maximus
ENSORLG00000013009	rpusd1	85	85.328	ENSSDUG00000001829	rpusd1	97	78.710	Seriola_dumerili
ENSORLG00000013009	rpusd1	85	85.328	ENSSLDG00000020853	rpusd1	97	78.710	Seriola_lalandi_dorsalis
ENSORLG00000013009	rpusd1	54	72.455	ENSSARG00000011187	-	100	72.455	Sorex_araneus
ENSORLG00000013009	rpusd1	62	55.556	ENSSPUG00000005119	-	99	55.556	Sphenodon_punctatus
ENSORLG00000013009	rpusd1	100	79.032	ENSSPAG00000012708	rpusd1	100	79.032	Stegastes_partitus
ENSORLG00000013009	rpusd1	99	58.147	ENSSSCG00000008000	RPUSD1	98	66.142	Sus_scrofa
ENSORLG00000013009	rpusd1	83	68.526	ENSTGUG00000015375	RPUSD1	99	68.526	Taeniopygia_guttata
ENSORLG00000013009	rpusd1	100	75.321	ENSTRUG00000003041	rpusd1	99	75.321	Takifugu_rubripes
ENSORLG00000013009	rpusd1	98	70.569	ENSTNIG00000002660	rpusd1	99	70.569	Tetraodon_nigroviridis
ENSORLG00000013009	rpusd1	99	58.442	ENSTTRG00000010167	RPUSD1	99	58.442	Tursiops_truncatus
ENSORLG00000013009	rpusd1	99	59.076	ENSUAMG00000012736	RPUSD1	99	59.406	Ursus_americanus
ENSORLG00000013009	rpusd1	99	59.076	ENSUMAG00000021174	RPUSD1	99	59.406	Ursus_maritimus
ENSORLG00000013009	rpusd1	99	58.940	ENSVVUG00000012357	RPUSD1	99	58.940	Vulpes_vulpes
ENSORLG00000013009	rpusd1	99	64.333	ENSXETG00000007184	rpusd1	99	64.333	Xenopus_tropicalis
ENSORLG00000013009	rpusd1	99	77.049	ENSXCOG00000017930	rpusd1	100	77.049	Xiphophorus_couchianus
ENSORLG00000013009	rpusd1	99	77.705	ENSXMAG00000024084	rpusd1	100	77.705	Xiphophorus_maculatus