EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000013050 (Gene tree)
Gene ID: 101157948
Gene Symbol: sf3a1
Alias: -
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 4286 bases
Position: chr9:18884420-18888705
Accession: 101157948
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000016355	PRP21_like_P	PF12230.8	1.3e-52	1	1
ENSORLP00000016355	Surp	PF01805.20	6.2e-46	1	2
ENSORLP00000016355	Surp	PF01805.20	6.2e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000016356	-	2303	XM_004072522	ENSORLP00000016355	753 (aa)	XP_004072570	H2MCR8

Gene Model

Click here to download ENSORLG00000013050's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000013050's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000013050	sf3a1	98	84.232	ENSG00000099995	SF3A1	96	82.021	Homo_sapiens
ENSORLG00000013050	sf3a1	99	93.360	ENSAPOG00000020465	sf3a1	96	93.625	Acanthochromis_polyacanthus
ENSORLG00000013050	sf3a1	98	83.827	ENSAMEG00000007737	SF3A1	96	81.545	Ailuropoda_melanoleuca
ENSORLG00000013050	sf3a1	99	93.493	ENSACIG00000020672	sf3a1	96	93.758	Amphilophus_citrinellus
ENSORLG00000013050	sf3a1	99	93.227	ENSAOCG00000003060	sf3a1	96	93.493	Amphiprion_ocellaris
ENSORLG00000013050	sf3a1	99	93.360	ENSAPEG00000010735	sf3a1	96	93.625	Amphiprion_percula
ENSORLG00000013050	sf3a1	100	91.953	ENSATEG00000021201	sf3a1	92	92.896	Anabas_testudineus
ENSORLG00000013050	sf3a1	95	84.945	ENSAPLG00000009057	SF3A1	96	82.754	Anas_platyrhynchos
ENSORLG00000013050	sf3a1	99	80.412	ENSACAG00000009415	SF3A1	96	80.000	Anolis_carolinensis
ENSORLG00000013050	sf3a1	99	83.311	ENSANAG00000032045	SF3A1	96	81.759	Aotus_nancymaae
ENSORLG00000013050	sf3a1	99	92.287	ENSACLG00000012622	sf3a1	96	92.154	Astatotilapia_calliptera
ENSORLG00000013050	sf3a1	99	87.084	ENSAMXG00000005382	sf3a1	96	87.483	Astyanax_mexicanus
ENSORLG00000013050	sf3a1	99	83.578	ENSBTAG00000003390	SF3A1	96	81.890	Bos_taurus
ENSORLG00000013050	sf3a1	82	44.689	WBGene00004188	prp-21	52	52.113	Caenorhabditis_elegans
ENSORLG00000013050	sf3a1	99	83.311	ENSCJAG00000010370	SF3A1	96	81.759	Callithrix_jacchus
ENSORLG00000013050	sf3a1	99	83.311	ENSCAFG00000012559	SF3A1	96	81.759	Canis_familiaris
ENSORLG00000013050	sf3a1	99	83.311	ENSCAFG00020000838	SF3A1	96	81.759	Canis_lupus_dingo
ENSORLG00000013050	sf3a1	99	83.755	ENSCHIG00000018642	SF3A1	96	82.021	Capra_hircus
ENSORLG00000013050	sf3a1	98	83.827	ENSTSYG00000004739	SF3A1	96	82.021	Carlito_syrichta
ENSORLG00000013050	sf3a1	97	69.241	ENSCAPG00000015414	SF3A1	95	69.252	Cavia_aperea
ENSORLG00000013050	sf3a1	98	83.962	ENSCPOG00000014589	SF3A1	96	81.759	Cavia_porcellus
ENSORLG00000013050	sf3a1	99	83.311	ENSCCAG00000032006	SF3A1	96	81.759	Cebus_capucinus
ENSORLG00000013050	sf3a1	99	83.578	ENSCATG00000029241	SF3A1	96	82.021	Cercocebus_atys
ENSORLG00000013050	sf3a1	98	83.962	ENSCLAG00000006508	SF3A1	96	81.617	Chinchilla_lanigera
ENSORLG00000013050	sf3a1	99	83.578	ENSCSAG00000009470	SF3A1	96	82.021	Chlorocebus_sabaeus
ENSORLG00000013050	sf3a1	61	90.476	ENSCHOG00000005201	SF3A1	61	90.476	Choloepus_hoffmanni
ENSORLG00000013050	sf3a1	99	82.850	ENSCPBG00000007595	SF3A1	96	81.926	Chrysemys_picta_bellii
ENSORLG00000013050	sf3a1	97	51.678	ENSCING00000008526	-	66	58.397	Ciona_intestinalis
ENSORLG00000013050	sf3a1	92	60.494	ENSCSAVG00000005608	-	53	66.202	Ciona_savignyi
ENSORLG00000013050	sf3a1	99	83.578	ENSCANG00000033564	SF3A1	96	82.021	Colobus_angolensis_palliatus
ENSORLG00000013050	sf3a1	96	85.007	ENSCGRG00001008933	Sf3a1	96	81.890	Cricetulus_griseus_chok1gshd
ENSORLG00000013050	sf3a1	96	85.007	ENSCGRG00000006127	Sf3a1	96	81.890	Cricetulus_griseus_crigri
ENSORLG00000013050	sf3a1	99	90.186	ENSCSEG00000010792	sf3a1	96	89.390	Cynoglossus_semilaevis
ENSORLG00000013050	sf3a1	99	91.512	ENSCVAG00000004560	sf3a1	96	91.645	Cyprinodon_variegatus
ENSORLG00000013050	sf3a1	99	87.118	ENSDARG00000041887	sf3a1	100	90.857	Danio_rerio
ENSORLG00000013050	sf3a1	98	83.984	ENSDNOG00000010629	SF3A1	96	81.651	Dasypus_novemcinctus
ENSORLG00000013050	sf3a1	99	83.712	ENSDORG00000005613	Sf3a1	96	81.759	Dipodomys_ordii
ENSORLG00000013050	sf3a1	84	60.766	FBgn0266917	Sf3a1	81	59.319	Drosophila_melanogaster
ENSORLG00000013050	sf3a1	88	83.533	ENSETEG00000017194	SF3A1	95	83.234	Echinops_telfairi
ENSORLG00000013050	sf3a1	96	66.188	ENSEBUG00000001285	sf3a1	91	67.102	Eptatretus_burgeri
ENSORLG00000013050	sf3a1	99	83.578	ENSEASG00005010254	SF3A1	96	81.747	Equus_asinus_asinus
ENSORLG00000013050	sf3a1	99	83.578	ENSECAG00000023962	SF3A1	96	81.747	Equus_caballus
ENSORLG00000013050	sf3a1	76	89.655	ENSEEUG00000003159	SF3A1	80	89.655	Erinaceus_europaeus
ENSORLG00000013050	sf3a1	99	85.733	ENSELUG00000022578	sf3a1	99	86.658	Esox_lucius
ENSORLG00000013050	sf3a1	99	83.178	ENSFCAG00000011932	SF3A1	96	81.627	Felis_catus
ENSORLG00000013050	sf3a1	95	83.956	ENSFALG00000006944	SF3A1	97	82.481	Ficedula_albicollis
ENSORLG00000013050	sf3a1	98	83.693	ENSFDAG00000009560	SF3A1	96	81.890	Fukomys_damarensis
ENSORLG00000013050	sf3a1	99	92.175	ENSFHEG00000010866	sf3a1	96	93.634	Fundulus_heteroclitus
ENSORLG00000013050	sf3a1	99	86.702	ENSGMOG00000016024	sf3a1	96	85.979	Gadus_morhua
ENSORLG00000013050	sf3a1	95	85.083	ENSGALG00000007937	SF3A1	96	82.523	Gallus_gallus
ENSORLG00000013050	sf3a1	99	93.236	ENSGAFG00000009111	sf3a1	96	93.501	Gambusia_affinis
ENSORLG00000013050	sf3a1	99	89.182	ENSGACG00000011893	sf3a1	96	88.259	Gasterosteus_aculeatus
ENSORLG00000013050	sf3a1	99	82.895	ENSGAGG00000000762	SF3A1	99	81.974	Gopherus_agassizii
ENSORLG00000013050	sf3a1	98	84.232	ENSGGOG00000012631	SF3A1	96	82.021	Gorilla_gorilla
ENSORLG00000013050	sf3a1	99	93.484	ENSHBUG00000015795	sf3a1	96	92.021	Haplochromis_burtoni
ENSORLG00000013050	sf3a1	99	83.445	ENSHGLG00000007907	SF3A1	96	81.890	Heterocephalus_glaber_female
ENSORLG00000013050	sf3a1	99	83.445	ENSHGLG00100013799	SF3A1	96	81.890	Heterocephalus_glaber_male
ENSORLG00000013050	sf3a1	99	88.579	ENSHCOG00000015423	sf3a1	96	88.446	Hippocampus_comes
ENSORLG00000013050	sf3a1	97	84.146	ENSIPUG00000002470	sf3a1	94	84.060	Ictalurus_punctatus
ENSORLG00000013050	sf3a1	97	84.699	ENSSTOG00000013892	SF3A1	96	81.890	Ictidomys_tridecemlineatus
ENSORLG00000013050	sf3a1	98	83.827	ENSJJAG00000022566	Sf3a1	96	82.045	Jaculus_jaculus
ENSORLG00000013050	sf3a1	99	90.837	ENSKMAG00000002400	sf3a1	96	91.368	Kryptolebias_marmoratus
ENSORLG00000013050	sf3a1	99	92.420	ENSLBEG00000022974	sf3a1	96	92.154	Labrus_bergylta
ENSORLG00000013050	sf3a1	99	82.695	ENSLACG00000003565	SF3A1	96	82.959	Latimeria_chalumnae
ENSORLG00000013050	sf3a1	99	86.772	ENSLOCG00000008251	sf3a1	95	85.714	Lepisosteus_oculatus
ENSORLG00000013050	sf3a1	99	83.311	ENSLAFG00000000448	SF3A1	96	81.759	Loxodonta_africana
ENSORLG00000013050	sf3a1	97	55.299	ENSLAFG00000026032	-	92	54.804	Loxodonta_africana
ENSORLG00000013050	sf3a1	99	83.445	ENSMFAG00000031979	SF3A1	96	81.890	Macaca_fascicularis
ENSORLG00000013050	sf3a1	99	83.445	ENSMMUG00000005547	SF3A1	96	81.890	Macaca_mulatta
ENSORLG00000013050	sf3a1	99	83.578	ENSMNEG00000037229	SF3A1	96	82.021	Macaca_nemestrina
ENSORLG00000013050	sf3a1	99	83.578	ENSMLEG00000041908	SF3A1	96	82.021	Mandrillus_leucophaeus
ENSORLG00000013050	sf3a1	97	91.599	ENSMAMG00000006460	sf3a1	98	87.975	Mastacembelus_armatus
ENSORLG00000013050	sf3a1	99	92.287	ENSMZEG00005009633	sf3a1	96	92.154	Maylandia_zebra
ENSORLG00000013050	sf3a1	95	85.083	ENSMGAG00000001330	SF3A1	95	83.832	Meleagris_gallopavo
ENSORLG00000013050	sf3a1	92	80.742	ENSMAUG00000020317	Sf3a1	96	76.222	Mesocricetus_auratus
ENSORLG00000013050	sf3a1	99	83.445	ENSMICG00000010038	SF3A1	96	81.759	Microcebus_murinus
ENSORLG00000013050	sf3a1	98	83.962	ENSMOCG00000008438	Sf3a1	96	82.152	Microtus_ochrogaster
ENSORLG00000013050	sf3a1	99	89.362	ENSMMOG00000015588	sf3a1	95	89.495	Mola_mola
ENSORLG00000013050	sf3a1	97	84.131	ENSMODG00000009270	SF3A1	96	81.711	Monodelphis_domestica
ENSORLG00000013050	sf3a1	99	90.861	ENSMALG00000000148	sf3a1	96	90.728	Monopterus_albus
ENSORLG00000013050	sf3a1	98	83.356	MGP_CAROLIEiJ_G0016029	Sf3a1	95	82.048	Mus_caroli
ENSORLG00000013050	sf3a1	98	83.356	ENSMUSG00000002129	Sf3a1	95	82.048	Mus_musculus
ENSORLG00000013050	sf3a1	98	83.356	MGP_PahariEiJ_G0016862	Sf3a1	95	82.181	Mus_pahari
ENSORLG00000013050	sf3a1	98	83.356	MGP_SPRETEiJ_G0016870	Sf3a1	95	82.048	Mus_spretus
ENSORLG00000013050	sf3a1	99	83.044	ENSMPUG00000013144	SF3A1	96	81.890	Mustela_putorius_furo
ENSORLG00000013050	sf3a1	98	83.558	ENSMLUG00000002139	SF3A1	96	81.759	Myotis_lucifugus
ENSORLG00000013050	sf3a1	99	84.112	ENSNGAG00000016977	Sf3a1	96	81.747	Nannospalax_galili
ENSORLG00000013050	sf3a1	99	92.971	ENSNBRG00000016642	sf3a1	96	91.512	Neolamprologus_brichardi
ENSORLG00000013050	sf3a1	99	83.578	ENSNLEG00000003686	SF3A1	96	82.021	Nomascus_leucogenys
ENSORLG00000013050	sf3a1	97	76.955	ENSMEUG00000008741	SF3A1	50	75.862	Notamacropus_eugenii
ENSORLG00000013050	sf3a1	97	85.109	ENSOPRG00000016636	SF3A1	96	82.700	Ochotona_princeps
ENSORLG00000013050	sf3a1	98	83.962	ENSODEG00000002571	SF3A1	96	81.997	Octodon_degus
ENSORLG00000013050	sf3a1	99	93.750	ENSONIG00000010848	sf3a1	96	93.617	Oreochromis_niloticus
ENSORLG00000013050	sf3a1	98	83.558	ENSOCUG00000007633	SF3A1	96	81.759	Oryctolagus_cuniculus
ENSORLG00000013050	sf3a1	100	99.469	ENSORLG00020003236	sf3a1	96	99.469	Oryzias_latipes_hni
ENSORLG00000013050	sf3a1	99	98.797	ENSORLG00015017411	sf3a1	96	98.797	Oryzias_latipes_hsok
ENSORLG00000013050	sf3a1	99	96.671	ENSOMEG00000013362	sf3a1	96	96.671	Oryzias_melastigma
ENSORLG00000013050	sf3a1	98	83.693	ENSOGAG00000012931	SF3A1	96	81.890	Otolemur_garnettii
ENSORLG00000013050	sf3a1	99	82.377	ENSOARG00000006849	SF3A1	96	80.709	Ovis_aries
ENSORLG00000013050	sf3a1	98	83.288	ENSPPAG00000041790	SF3A1	96	81.102	Pan_paniscus
ENSORLG00000013050	sf3a1	99	83.178	ENSPPRG00000004391	SF3A1	96	81.627	Panthera_pardus
ENSORLG00000013050	sf3a1	98	83.693	ENSPTIG00000000844	SF3A1	95	83.743	Panthera_tigris_altaica
ENSORLG00000013050	sf3a1	98	84.232	ENSPTRG00000014240	SF3A1	96	82.021	Pan_troglodytes
ENSORLG00000013050	sf3a1	99	83.578	ENSPANG00000020772	SF3A1	96	82.021	Papio_anubis
ENSORLG00000013050	sf3a1	86	89.655	ENSPSIG00000012803	SF3A1	92	89.655	Pelodiscus_sinensis
ENSORLG00000013050	sf3a1	97	88.509	ENSPMGG00000023096	sf3a1	96	89.056	Periophthalmus_magnuspinnatus
ENSORLG00000013050	sf3a1	96	85.144	ENSPEMG00000009494	Sf3a1	96	82.021	Peromyscus_maniculatus_bairdii
ENSORLG00000013050	sf3a1	71	77.331	ENSPMAG00000007139	-	93	76.234	Petromyzon_marinus
ENSORLG00000013050	sf3a1	97	83.858	ENSPCIG00000022692	SF3A1	96	81.974	Phascolarctos_cinereus
ENSORLG00000013050	sf3a1	99	83.112	ENSPFOG00000016768	sf3a1	96	83.112	Poecilia_formosa
ENSORLG00000013050	sf3a1	99	93.501	ENSPLAG00000017268	sf3a1	96	93.899	Poecilia_latipinna
ENSORLG00000013050	sf3a1	96	93.829	ENSPMEG00000019811	sf3a1	95	92.247	Poecilia_mexicana
ENSORLG00000013050	sf3a1	99	93.501	ENSPREG00000010347	sf3a1	96	93.767	Poecilia_reticulata
ENSORLG00000013050	sf3a1	99	83.578	ENSPPYG00000011707	SF3A1	96	82.021	Pongo_abelii
ENSORLG00000013050	sf3a1	56	84.711	ENSPCAG00000003266	SF3A1	53	84.711	Procavia_capensis
ENSORLG00000013050	sf3a1	99	83.311	ENSPCOG00000026630	SF3A1	96	81.627	Propithecus_coquereli
ENSORLG00000013050	sf3a1	94	84.034	ENSPVAG00000017719	SF3A1	90	83.333	Pteropus_vampyrus
ENSORLG00000013050	sf3a1	99	93.351	ENSPNYG00000018706	sf3a1	96	91.888	Pundamilia_nyererei
ENSORLG00000013050	sf3a1	99	86.818	ENSPNAG00000003721	sf3a1	96	86.818	Pygocentrus_nattereri
ENSORLG00000013050	sf3a1	98	83.558	ENSRNOG00000005218	Sf3a1	95	81.818	Rattus_norvegicus
ENSORLG00000013050	sf3a1	99	83.445	ENSRBIG00000032167	SF3A1	96	81.890	Rhinopithecus_bieti
ENSORLG00000013050	sf3a1	99	83.445	ENSRROG00000044908	SF3A1	97	81.108	Rhinopithecus_roxellana
ENSORLG00000013050	sf3a1	93	84.473	ENSSBOG00000021960	SF3A1	94	83.780	Saimiri_boliviensis_boliviensis
ENSORLG00000013050	sf3a1	99	79.310	ENSSHAG00000003666	SF3A1	92	81.122	Sarcophilus_harrisii
ENSORLG00000013050	sf3a1	99	88.243	ENSSFOG00015004579	sf3a1	96	88.507	Scleropages_formosus
ENSORLG00000013050	sf3a1	99	90.521	ENSSMAG00000004275	sf3a1	96	90.788	Scophthalmus_maximus
ENSORLG00000013050	sf3a1	99	93.218	ENSSDUG00000022219	sf3a1	96	93.085	Seriola_dumerili
ENSORLG00000013050	sf3a1	99	93.218	ENSSLDG00000012642	sf3a1	96	93.085	Seriola_lalandi_dorsalis
ENSORLG00000013050	sf3a1	98	80.972	ENSSARG00000005960	SF3A1	96	79.892	Sorex_araneus
ENSORLG00000013050	sf3a1	96	84.490	ENSSPUG00000018863	SF3A1	96	82.445	Sphenodon_punctatus
ENSORLG00000013050	sf3a1	99	94.016	ENSSPAG00000011856	sf3a1	96	93.883	Stegastes_partitus
ENSORLG00000013050	sf3a1	99	83.178	ENSSSCG00000010002	SF3A1	97	81.108	Sus_scrofa
ENSORLG00000013050	sf3a1	95	84.828	ENSTGUG00000010547	SF3A1	95	83.446	Taeniopygia_guttata
ENSORLG00000013050	sf3a1	99	88.298	ENSTRUG00000006118	sf3a1	96	87.101	Takifugu_rubripes
ENSORLG00000013050	sf3a1	54	88.060	ENSTNIG00000005713	sf3a1	73	87.500	Tetraodon_nigroviridis
ENSORLG00000013050	sf3a1	98	77.089	ENSTBEG00000012771	SF3A1	96	75.459	Tupaia_belangeri
ENSORLG00000013050	sf3a1	99	83.333	ENSTTRG00000001535	SF3A1	96	81.782	Tursiops_truncatus
ENSORLG00000013050	sf3a1	99	82.415	ENSUAMG00000006750	SF3A1	96	81.759	Ursus_americanus
ENSORLG00000013050	sf3a1	98	83.827	ENSUMAG00000016665	SF3A1	96	81.782	Ursus_maritimus
ENSORLG00000013050	sf3a1	99	83.311	ENSVVUG00000003075	SF3A1	96	81.759	Vulpes_vulpes
ENSORLG00000013050	sf3a1	99	78.375	ENSXETG00000016144	sf3a1	96	83.806	Xenopus_tropicalis
ENSORLG00000013050	sf3a1	99	92.440	ENSXCOG00000015653	sf3a1	96	92.706	Xiphophorus_couchianus
ENSORLG00000013050	sf3a1	100	92.490	ENSXMAG00000002753	sf3a1	98	92.754	Xiphophorus_maculatus