EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000013063 (Gene tree)
Gene ID: 101158795
Gene Symbol: vars
Alias: -
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 21317 bases
Position: chr16:20768918-20790234
Accession: 101158795
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000016375	Val_tRNA-synt_C	PF10458.9	1.3e-05	1	1
ENSORLP00000016375	tRNA-synt_1g	PF09334.11	4.9e-12	1	1
ENSORLP00000016375	Anticodon_1	PF08264.13	1.8e-34	1	1
ENSORLP00000016375	tRNA-synt_1	PF00133.22	2.8e-206	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000016376	-	6426	XM_004078001	ENSORLP00000016375	1284 (aa)	XP_004078049	H2MCT7

Gene Model

Click here to download ENSORLG00000013063's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000013063's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000013063	vars	78	49.659	ENSORLG00000010632	vars2	95	49.001

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000013063	vars	100	64.390	ENSG00000204394	VARS	99	72.699	Homo_sapiens
ENSORLG00000013063	vars	94	88.944	ENSAPOG00000020691	vars	96	88.449	Acanthochromis_polyacanthus
ENSORLG00000013063	vars	94	88.944	ENSAPOG00000020921	vars	96	88.449	Acanthochromis_polyacanthus
ENSORLG00000013063	vars	100	64.846	ENSAMEG00000006417	VARS	100	64.828	Ailuropoda_melanoleuca
ENSORLG00000013063	vars	100	88.190	ENSACIG00000013752	vars	100	88.190	Amphilophus_citrinellus
ENSORLG00000013063	vars	100	89.097	ENSAOCG00000002447	vars	99	89.097	Amphiprion_ocellaris
ENSORLG00000013063	vars	100	88.941	ENSAPEG00000010638	vars	99	88.941	Amphiprion_percula
ENSORLG00000013063	vars	100	84.382	ENSATEG00000020219	vars	100	84.227	Anabas_testudineus
ENSORLG00000013063	vars	90	71.170	ENSACAG00000029133	-	99	71.096	Anolis_carolinensis
ENSORLG00000013063	vars	100	64.390	ENSANAG00000015453	VARS	100	64.373	Aotus_nancymaae
ENSORLG00000013063	vars	100	89.572	ENSACLG00000025699	vars	97	89.416	Astatotilapia_calliptera
ENSORLG00000013063	vars	96	78.994	ENSAMXG00000017716	vars	96	78.994	Astyanax_mexicanus
ENSORLG00000013063	vars	100	64.969	ENSBTAG00000005631	VARS	100	64.873	Bos_taurus
ENSORLG00000013063	vars	100	64.236	ENSCJAG00000002604	VARS	100	64.220	Callithrix_jacchus
ENSORLG00000013063	vars	100	64.665	ENSCAFG00000000636	VARS	100	64.724	Canis_familiaris
ENSORLG00000013063	vars	94	65.710	ENSCAFG00020020790	VARS	96	65.768	Canis_lupus_dingo
ENSORLG00000013063	vars	100	64.815	ENSCHIG00000011008	VARS	100	64.719	Capra_hircus
ENSORLG00000013063	vars	100	64.313	ENSTSYG00000001567	VARS	100	64.220	Carlito_syrichta
ENSORLG00000013063	vars	91	68.263	ENSCAPG00000013736	VARS	98	68.120	Cavia_aperea
ENSORLG00000013063	vars	100	64.335	ENSCPOG00000000870	VARS	100	64.055	Cavia_porcellus
ENSORLG00000013063	vars	100	64.467	ENSCCAG00000035656	VARS	100	64.297	Cebus_capucinus
ENSORLG00000013063	vars	100	64.674	ENSCATG00000022394	VARS	100	64.526	Cercocebus_atys
ENSORLG00000013063	vars	93	64.338	ENSCLAG00000009470	VARS	97	64.123	Chinchilla_lanigera
ENSORLG00000013063	vars	100	64.444	ENSCSAG00000008784	VARS	100	64.297	Chlorocebus_sabaeus
ENSORLG00000013063	vars	77	74.848	ENSCPBG00000007943	VARS	96	74.873	Chrysemys_picta_bellii
ENSORLG00000013063	vars	100	64.598	ENSCANG00000033570	VARS	100	64.450	Colobus_angolensis_palliatus
ENSORLG00000013063	vars	100	64.892	ENSCGRG00001005686	Vars	100	64.950	Cricetulus_griseus_chok1gshd
ENSORLG00000013063	vars	93	63.051	ENSCGRG00000013352	Vars	78	63.119	Cricetulus_griseus_crigri
ENSORLG00000013063	vars	100	81.337	ENSCSEG00000019652	vars	100	81.337	Cynoglossus_semilaevis
ENSORLG00000013063	vars	100	89.339	ENSCVAG00000022398	vars	100	89.261	Cyprinodon_variegatus
ENSORLG00000013063	vars	100	82.710	ENSDARG00000044575	vars	100	83.022	Danio_rerio
ENSORLG00000013063	vars	81	71.770	ENSDORG00000016433	Vars	93	71.756	Dipodomys_ordii
ENSORLG00000013063	vars	68	74.864	ENSETEG00000003824	VARS	76	74.864	Echinops_telfairi
ENSORLG00000013063	vars	51	73.010	ENSEBUG00000007086	vars	83	73.010	Eptatretus_burgeri
ENSORLG00000013063	vars	57	65.663	ENSEBUG00000004637	vars	100	65.663	Eptatretus_burgeri
ENSORLG00000013063	vars	100	64.973	ENSEASG00005015673	VARS	100	64.954	Equus_asinus_asinus
ENSORLG00000013063	vars	100	64.923	ENSECAG00000014620	VARS	100	64.981	Equus_caballus
ENSORLG00000013063	vars	72	71.429	ENSEEUG00000004116	VARS	73	71.429	Erinaceus_europaeus
ENSORLG00000013063	vars	100	82.804	ENSELUG00000006550	vars	97	82.804	Esox_lucius
ENSORLG00000013063	vars	100	64.973	ENSFCAG00000004510	VARS	100	64.877	Felis_catus
ENSORLG00000013063	vars	88	70.407	ENSFDAG00000011401	VARS	100	70.407	Fukomys_damarensis
ENSORLG00000013063	vars	100	88.093	ENSFHEG00000010672	vars	100	87.938	Fundulus_heteroclitus
ENSORLG00000013063	vars	100	81.153	ENSGMOG00000014908	vars	100	80.997	Gadus_morhua
ENSORLG00000013063	vars	100	89.027	ENSGAFG00000021630	vars	100	88.716	Gambusia_affinis
ENSORLG00000013063	vars	93	87.312	ENSGACG00000009601	vars	100	83.645	Gasterosteus_aculeatus
ENSORLG00000013063	vars	50	58.257	ENSGAGG00000006508	-	91	60.092	Gopherus_agassizii
ENSORLG00000013063	vars	100	64.543	ENSGGOG00000011364	VARS	100	64.373	Gorilla_gorilla
ENSORLG00000013063	vars	100	89.572	ENSHBUG00000017151	vars	97	89.416	Haplochromis_burtoni
ENSORLG00000013063	vars	100	64.484	ENSHGLG00000011646	VARS	100	64.561	Heterocephalus_glaber_female
ENSORLG00000013063	vars	94	61.192	ENSHGLG00100018062	VARS	99	60.838	Heterocephalus_glaber_male
ENSORLG00000013063	vars	99	83.632	ENSHCOG00000012198	vars	97	85.844	Hippocampus_comes
ENSORLG00000013063	vars	100	82.115	ENSIPUG00000005218	vars	100	82.115	Ictalurus_punctatus
ENSORLG00000013063	vars	100	65.050	ENSSTOG00000013112	VARS	100	64.977	Ictidomys_tridecemlineatus
ENSORLG00000013063	vars	100	52.987	ENSJJAG00000015343	-	100	52.799	Jaculus_jaculus
ENSORLG00000013063	vars	100	64.593	ENSJJAG00000019749	-	100	64.429	Jaculus_jaculus
ENSORLG00000013063	vars	100	85.358	ENSKMAG00000009455	vars	100	85.514	Kryptolebias_marmoratus
ENSORLG00000013063	vars	100	85.278	ENSLBEG00000010341	vars	99	85.202	Labrus_bergylta
ENSORLG00000013063	vars	94	66.531	ENSLACG00000015232	VARS	99	66.585	Latimeria_chalumnae
ENSORLG00000013063	vars	100	75.097	ENSLOCG00000004240	vars	100	74.942	Lepisosteus_oculatus
ENSORLG00000013063	vars	100	64.484	ENSLAFG00000023090	VARS	100	64.484	Loxodonta_africana
ENSORLG00000013063	vars	100	64.521	ENSMFAG00000001032	VARS	100	64.373	Macaca_fascicularis
ENSORLG00000013063	vars	100	64.521	ENSMMUG00000006828	VARS	100	64.373	Macaca_mulatta
ENSORLG00000013063	vars	100	64.521	ENSMNEG00000042072	VARS	100	64.373	Macaca_nemestrina
ENSORLG00000013063	vars	100	64.598	ENSMLEG00000039307	VARS	100	64.450	Mandrillus_leucophaeus
ENSORLG00000013063	vars	100	87.539	ENSMAMG00000003949	vars	100	87.539	Mastacembelus_armatus
ENSORLG00000013063	vars	100	89.650	ENSMZEG00005018327	vars	97	89.494	Maylandia_zebra
ENSORLG00000013063	vars	100	64.815	ENSMAUG00000006715	Vars	100	64.796	Mesocricetus_auratus
ENSORLG00000013063	vars	100	64.395	ENSMICG00000003548	VARS	100	64.052	Microcebus_murinus
ENSORLG00000013063	vars	100	64.015	ENSMOCG00000015404	Vars	100	64.071	Microtus_ochrogaster
ENSORLG00000013063	vars	100	85.125	ENSMMOG00000015801	vars	100	84.969	Mola_mola
ENSORLG00000013063	vars	100	64.950	ENSMODG00000015204	-	100	64.307	Monodelphis_domestica
ENSORLG00000013063	vars	99	87.295	ENSMALG00000022532	vars	99	87.217	Monopterus_albus
ENSORLG00000013063	vars	100	65.637	MGP_CAROLIEiJ_G0021491	Vars	100	65.560	Mus_caroli
ENSORLG00000013063	vars	100	65.483	ENSMUSG00000007029	Vars	100	65.405	Mus_musculus
ENSORLG00000013063	vars	100	65.405	MGP_PahariEiJ_G0020486	Vars	100	65.328	Mus_pahari
ENSORLG00000013063	vars	100	65.560	MGP_SPRETEiJ_G0022396	Vars	100	65.483	Mus_spretus
ENSORLG00000013063	vars	100	64.892	ENSMPUG00000010821	VARS	100	64.873	Mustela_putorius_furo
ENSORLG00000013063	vars	78	67.357	ENSMLUG00000013126	VARS	100	67.125	Myotis_lucifugus
ENSORLG00000013063	vars	100	64.665	ENSNGAG00000012151	Vars	100	64.765	Nannospalax_galili
ENSORLG00000013063	vars	100	89.261	ENSNBRG00000020520	vars	100	89.105	Neolamprologus_brichardi
ENSORLG00000013063	vars	100	64.313	ENSNLEG00000006351	VARS	100	64.297	Nomascus_leucogenys
ENSORLG00000013063	vars	94	73.146	ENSMEUG00000011378	VARS	100	63.482	Notamacropus_eugenii
ENSORLG00000013063	vars	100	64.643	ENSOPRG00000003607	VARS	100	64.724	Ochotona_princeps
ENSORLG00000013063	vars	100	64.330	ENSODEG00000017681	VARS	100	64.253	Octodon_degus
ENSORLG00000013063	vars	100	88.691	ENSONIG00000013064	vars	100	90.752	Oreochromis_niloticus
ENSORLG00000013063	vars	77	67.404	ENSOANG00000005400	VARS	98	67.326	Ornithorhynchus_anatinus
ENSORLG00000013063	vars	100	63.713	ENSOCUG00000022463	VARS	100	63.405	Oryctolagus_cuniculus
ENSORLG00000013063	vars	100	98.832	ENSORLG00020003504	vars	100	98.832	Oryzias_latipes_hni
ENSORLG00000013063	vars	100	98.910	ENSORLG00015009001	vars	100	98.910	Oryzias_latipes_hsok
ENSORLG00000013063	vars	100	96.262	ENSOMEG00000015016	vars	100	96.262	Oryzias_melastigma
ENSORLG00000013063	vars	100	64.390	ENSOGAG00000007515	VARS	100	64.297	Otolemur_garnettii
ENSORLG00000013063	vars	100	64.390	ENSPPAG00000034012	VARS	100	64.373	Pan_paniscus
ENSORLG00000013063	vars	100	64.973	ENSPPRG00000014855	VARS	100	64.877	Panthera_pardus
ENSORLG00000013063	vars	85	68.994	ENSPTIG00000010462	VARS	94	68.421	Panthera_tigris_altaica
ENSORLG00000013063	vars	100	64.467	ENSPTRG00000017985	VARS	100	64.450	Pan_troglodytes
ENSORLG00000013063	vars	100	63.254	ENSPANG00000014565	VARS	100	63.110	Papio_anubis
ENSORLG00000013063	vars	100	81.104	ENSPKIG00000016304	vars	100	80.934	Paramormyrops_kingsleyae
ENSORLG00000013063	vars	100	82.555	ENSPMGG00000023909	vars	100	82.568	Periophthalmus_magnuspinnatus
ENSORLG00000013063	vars	100	64.892	ENSPEMG00000006639	Vars	100	64.950	Peromyscus_maniculatus_bairdii
ENSORLG00000013063	vars	100	64.892	ENSPCIG00000018553	VARS	100	64.248	Phascolarctos_cinereus
ENSORLG00000013063	vars	100	89.261	ENSPFOG00000015690	vars	100	89.183	Poecilia_formosa
ENSORLG00000013063	vars	100	89.183	ENSPLAG00000009590	vars	100	89.105	Poecilia_latipinna
ENSORLG00000013063	vars	100	89.183	ENSPMEG00000004708	vars	100	89.105	Poecilia_mexicana
ENSORLG00000013063	vars	100	77.975	ENSPREG00000013264	vars	97	92.505	Poecilia_reticulata
ENSORLG00000013063	vars	100	62.807	ENSPPYG00000016460	VARS	100	62.997	Pongo_abelii
ENSORLG00000013063	vars	86	66.785	ENSPCAG00000013565	VARS	86	66.785	Procavia_capensis
ENSORLG00000013063	vars	100	64.264	ENSPCOG00000010942	VARS	100	64.248	Propithecus_coquereli
ENSORLG00000013063	vars	100	62.260	ENSPVAG00000012403	VARS	100	62.289	Pteropus_vampyrus
ENSORLG00000013063	vars	100	89.650	ENSPNYG00000022511	vars	100	89.494	Pundamilia_nyererei
ENSORLG00000013063	vars	100	82.686	ENSPNAG00000020962	vars	100	82.844	Pygocentrus_nattereri
ENSORLG00000013063	vars	100	65.355	ENSRNOG00000000867	Vars	100	65.104	Rattus_norvegicus
ENSORLG00000013063	vars	100	64.521	ENSRBIG00000041669	VARS	100	64.373	Rhinopithecus_bieti
ENSORLG00000013063	vars	100	64.521	ENSRROG00000045490	VARS	100	64.373	Rhinopithecus_roxellana
ENSORLG00000013063	vars	100	63.776	ENSSBOG00000035402	VARS	100	63.761	Saimiri_boliviensis_boliviensis
ENSORLG00000013063	vars	100	64.297	ENSSHAG00000006937	VARS	100	64.134	Sarcophilus_harrisii
ENSORLG00000013063	vars	100	80.140	ENSSFOG00015014272	vars	98	85.366	Scleropages_formosus
ENSORLG00000013063	vars	100	86.526	ENSSMAG00000009596	vars	99	86.604	Scophthalmus_maximus
ENSORLG00000013063	vars	100	89.798	ENSSDUG00000014177	vars	100	89.720	Seriola_dumerili
ENSORLG00000013063	vars	100	89.564	ENSSLDG00000025316	vars	100	89.486	Seriola_lalandi_dorsalis
ENSORLG00000013063	vars	100	89.019	ENSSPAG00000017068	vars	100	88.863	Stegastes_partitus
ENSORLG00000013063	vars	100	64.308	ENSSSCG00000038950	VARS	100	64.193	Sus_scrofa
ENSORLG00000013063	vars	81	81.112	ENSTRUG00000012307	vars	97	80.707	Takifugu_rubripes
ENSORLG00000013063	vars	100	85.148	ENSTNIG00000008011	vars	100	85.148	Tetraodon_nigroviridis
ENSORLG00000013063	vars	100	59.154	ENSTTRG00000014128	VARS	100	59.168	Tursiops_truncatus
ENSORLG00000013063	vars	100	63.405	ENSUAMG00000010424	VARS	100	63.482	Ursus_americanus
ENSORLG00000013063	vars	100	59.722	ENSUMAG00000013486	VARS	98	64.014	Ursus_maritimus
ENSORLG00000013063	vars	100	65.027	ENSVVUG00000021323	VARS	100	64.674	Vulpes_vulpes
ENSORLG00000013063	vars	100	64.055	ENSXETG00000024076	vars	100	63.936	Xenopus_tropicalis
ENSORLG00000013063	vars	100	86.325	ENSXCOG00000019172	vars	100	86.325	Xiphophorus_couchianus
ENSORLG00000013063	vars	100	88.949	ENSXMAG00000010927	vars	100	88.656	Xiphophorus_maculatus