EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000013265 (Gene tree)
Gene ID: 101164345
Gene Symbol: trnau1apb
Alias: -
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 14991 bases
Position: chr17:20776741-20791731
Accession: 101164345
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000016619	RRM_1	PF00076.22	1e-30	1	2
ENSORLP00000016619	RRM_1	PF00076.22	1e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000016620	-	5181	XM_004079278	ENSORLP00000016619	345 (aa)	XP_004079326	H2MDH4

Gene Model

Click here to download ENSORLG00000013265's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000013265's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000013265	trnau1apb	96	42.042	ENSORLG00000010428	trnau1apa	70	52.764
ENSORLG00000013265	trnau1apb	75	30.857	ENSORLG00000013798	tial1	68	30.857
ENSORLG00000013265	trnau1apb	67	30.857	ENSORLG00000002529	-	68	30.857
ENSORLG00000013265	trnau1apb	50	32.571	ENSORLG00000015642	tia1	68	32.571

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000013265	trnau1apb	99	69.477	ENSAPOG00000010086	trnau1apb	63	92.513	Acanthochromis_polyacanthus
ENSORLG00000013265	trnau1apb	99	77.493	ENSACIG00000001863	trnau1apb	70	88.839	Amphilophus_citrinellus
ENSORLG00000013265	trnau1apb	99	85.756	ENSAOCG00000011891	trnau1apb	66	91.071	Amphiprion_ocellaris
ENSORLG00000013265	trnau1apb	99	80.814	ENSAPEG00000008029	trnau1apb	67	91.071	Amphiprion_percula
ENSORLG00000013265	trnau1apb	99	86.919	ENSATEG00000002196	trnau1apb	100	77.326	Anabas_testudineus
ENSORLG00000013265	trnau1apb	99	78.098	ENSACLG00000003016	trnau1apb	68	89.286	Astatotilapia_calliptera
ENSORLG00000013265	trnau1apb	99	63.848	ENSAMXG00000001805	trnau1apb	63	81.000	Astyanax_mexicanus
ENSORLG00000013265	trnau1apb	99	78.779	ENSCSEG00000018215	trnau1apb	66	87.111	Cynoglossus_semilaevis
ENSORLG00000013265	trnau1apb	95	77.576	ENSCVAG00000017866	trnau1apb	100	79.697	Cyprinodon_variegatus
ENSORLG00000013265	trnau1apb	99	62.139	ENSDARG00000056475	trnau1apb	63	78.500	Danio_rerio
ENSORLG00000013265	trnau1apb	99	62.717	ENSELUG00000016683	trnau1apb	62	78.607	Esox_lucius
ENSORLG00000013265	trnau1apb	100	80.342	ENSFHEG00000001267	trnau1apb	65	87.111	Fundulus_heteroclitus
ENSORLG00000013265	trnau1apb	99	70.085	ENSGMOG00000001160	trnau1apb	67	87.946	Gadus_morhua
ENSORLG00000013265	trnau1apb	99	62.717	ENSGAFG00000006770	trnau1apb	67	83.010	Gambusia_affinis
ENSORLG00000013265	trnau1apb	99	76.453	ENSGACG00000014944	trnau1apb	68	88.839	Gasterosteus_aculeatus
ENSORLG00000013265	trnau1apb	100	84.058	ENSHBUG00000018944	trnau1apb	66	89.333	Haplochromis_burtoni
ENSORLG00000013265	trnau1apb	67	81.739	ENSHCOG00000011350	trnau1apb	71	81.250	Hippocampus_comes
ENSORLG00000013265	trnau1apb	99	65.507	ENSIPUG00000008843	tsp1l	63	80.000	Ictalurus_punctatus
ENSORLG00000013265	trnau1apb	64	89.545	ENSKMAG00000010082	trnau1apb	100	75.072	Kryptolebias_marmoratus
ENSORLG00000013265	trnau1apb	99	82.267	ENSLBEG00000020480	trnau1apb	67	89.732	Labrus_bergylta
ENSORLG00000013265	trnau1apb	99	52.707	ENSLOCG00000013175	trnau1apb	64	67.164	Lepisosteus_oculatus
ENSORLG00000013265	trnau1apb	99	83.430	ENSMAMG00000012192	trnau1apb	66	89.732	Mastacembelus_armatus
ENSORLG00000013265	trnau1apb	100	84.058	ENSMZEG00005014852	trnau1apb	66	89.333	Maylandia_zebra
ENSORLG00000013265	trnau1apb	71	37.903	ENSMGAG00000003234	-	85	49.153	Meleagris_gallopavo
ENSORLG00000013265	trnau1apb	97	73.066	ENSMMOG00000021521	trnau1apb	70	74.583	Mola_mola
ENSORLG00000013265	trnau1apb	99	69.883	ENSMALG00000003772	trnau1apb	60	93.956	Monopterus_albus
ENSORLG00000013265	trnau1apb	97	78.171	ENSNBRG00000000751	trnau1apb	70	89.286	Neolamprologus_brichardi
ENSORLG00000013265	trnau1apb	99	73.900	ENSONIG00000016639	trnau1apb	75	89.140	Oreochromis_niloticus
ENSORLG00000013265	trnau1apb	100	99.420	ENSORLG00020004464	trnau1apb	100	99.420	Oryzias_latipes_hni
ENSORLG00000013265	trnau1apb	100	99.130	ENSORLG00015021098	trnau1apb	100	99.130	Oryzias_latipes_hsok
ENSORLG00000013265	trnau1apb	100	91.594	ENSOMEG00000016531	trnau1apb	100	91.594	Oryzias_melastigma
ENSORLG00000013265	trnau1apb	99	57.514	ENSPKIG00000007995	trnau1apb	67	74.242	Paramormyrops_kingsleyae
ENSORLG00000013265	trnau1apb	70	82.243	ENSPMGG00000018509	trnau1apb	88	82.243	Periophthalmus_magnuspinnatus
ENSORLG00000013265	trnau1apb	100	81.844	ENSPFOG00000003938	trnau1apb	100	77.168	Poecilia_formosa
ENSORLG00000013265	trnau1apb	100	81.844	ENSPLAG00000015480	trnau1apb	100	77.168	Poecilia_latipinna
ENSORLG00000013265	trnau1apb	100	81.844	ENSPMEG00000012743	trnau1apb	100	77.168	Poecilia_mexicana
ENSORLG00000013265	trnau1apb	100	75.723	ENSPREG00000015035	trnau1apb	100	75.723	Poecilia_reticulata
ENSORLG00000013265	trnau1apb	99	75.504	ENSPNYG00000012127	trnau1apb	68	85.268	Pundamilia_nyererei
ENSORLG00000013265	trnau1apb	99	65.507	ENSPNAG00000019138	trnau1apb	62	81.000	Pygocentrus_nattereri
ENSORLG00000013265	trnau1apb	99	59.429	ENSSFOG00015014158	trnau1apb	60	78.894	Scleropages_formosus
ENSORLG00000013265	trnau1apb	99	80.175	ENSSMAG00000001745	trnau1apb	67	89.286	Scophthalmus_maximus
ENSORLG00000013265	trnau1apb	99	84.840	ENSSDUG00000011109	trnau1apb	99	75.219	Seriola_dumerili
ENSORLG00000013265	trnau1apb	99	85.131	ENSSLDG00000012947	trnau1apb	99	75.510	Seriola_lalandi_dorsalis
ENSORLG00000013265	trnau1apb	99	86.628	ENSSPAG00000006917	trnau1apb	100	76.744	Stegastes_partitus
ENSORLG00000013265	trnau1apb	100	77.971	ENSTRUG00000008608	trnau1apb	68	83.838	Takifugu_rubripes
ENSORLG00000013265	trnau1apb	94	67.077	ENSXCOG00000007974	trnau1apb	54	92.500	Xiphophorus_couchianus
ENSORLG00000013265	trnau1apb	100	77.457	ENSXMAG00000029918	trnau1apb	100	77.457	Xiphophorus_maculatus