EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000013342 (Gene tree)
Gene ID: 101160767
Gene Symbol: a1cf
Alias: -
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 17294 bases
Position: chr19:21608441-21625734
Accession: 101160767
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000016722	DND1_DSRM	PF14709.7	7.6e-25	1	1
ENSORLP00000016722	RRM_1	PF00076.22	2.4e-39	1	3
ENSORLP00000016722	RRM_1	PF00076.22	2.4e-39	2	3
ENSORLP00000016722	RRM_1	PF00076.22	2.4e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000016723	-	1788	XM_004080747	ENSORLP00000016722	595 (aa)	XP_004080795	H2MDS1

Gene Model

Click here to download ENSORLG00000013342's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000013342's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000013342	a1cf	68	62.162	ENSORLG00000002429	rbm46	92	60.127
ENSORLG00000013342	a1cf	92	51.805	ENSORLG00000005847	rbm47	81	51.264
ENSORLG00000013342	a1cf	50	53.356	ENSORLG00000009190	syncrip	71	42.762

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000013342	a1cf	100	73.744	ENSG00000148584	A1CF	100	87.624	Homo_sapiens
ENSORLG00000013342	a1cf	100	81.759	ENSAPOG00000008259	a1cf	100	83.089	Acanthochromis_polyacanthus
ENSORLG00000013342	a1cf	100	74.146	ENSAMEG00000000523	A1CF	100	74.141	Ailuropoda_melanoleuca
ENSORLG00000013342	a1cf	100	82.114	ENSACIG00000008632	a1cf	100	83.415	Amphilophus_citrinellus
ENSORLG00000013342	a1cf	100	83.361	ENSAOCG00000023744	a1cf	97	88.319	Amphiprion_ocellaris
ENSORLG00000013342	a1cf	100	84.526	ENSAPEG00000009537	a1cf	100	86.190	Amphiprion_percula
ENSORLG00000013342	a1cf	100	84.098	ENSATEG00000013720	a1cf	100	84.918	Anabas_testudineus
ENSORLG00000013342	a1cf	100	75.658	ENSAPLG00000002964	A1CF	100	76.073	Anas_platyrhynchos
ENSORLG00000013342	a1cf	100	74.135	ENSACAG00000015269	A1CF	100	75.041	Anolis_carolinensis
ENSORLG00000013342	a1cf	100	73.258	ENSANAG00000019974	A1CF	100	73.258	Aotus_nancymaae
ENSORLG00000013342	a1cf	100	84.422	ENSACLG00000017428	a1cf	100	85.762	Astatotilapia_calliptera
ENSORLG00000013342	a1cf	100	72.934	ENSAMXG00000018180	a1cf	100	72.934	Astyanax_mexicanus
ENSORLG00000013342	a1cf	100	73.366	ENSBTAG00000021195	A1CF	99	75.986	Bos_taurus
ENSORLG00000013342	a1cf	100	74.230	ENSCJAG00000005045	A1CF	100	74.230	Callithrix_jacchus
ENSORLG00000013342	a1cf	100	74.267	ENSCAFG00000015581	A1CF	100	74.426	Canis_familiaris
ENSORLG00000013342	a1cf	100	74.267	ENSCAFG00020026421	A1CF	98	82.609	Canis_lupus_dingo
ENSORLG00000013342	a1cf	100	74.837	ENSCHIG00000020411	A1CF	100	74.673	Capra_hircus
ENSORLG00000013342	a1cf	94	73.666	ENSTSYG00000001755	A1CF	100	72.870	Carlito_syrichta
ENSORLG00000013342	a1cf	100	72.012	ENSCAPG00000017386	A1CF	100	71.720	Cavia_aperea
ENSORLG00000013342	a1cf	100	73.977	ENSCPOG00000009807	A1CF	100	74.141	Cavia_porcellus
ENSORLG00000013342	a1cf	100	74.351	ENSCCAG00000018168	A1CF	100	74.351	Cebus_capucinus
ENSORLG00000013342	a1cf	100	72.520	ENSCATG00000043715	A1CF	100	72.520	Cercocebus_atys
ENSORLG00000013342	a1cf	100	73.786	ENSCLAG00000010424	A1CF	100	74.346	Chinchilla_lanigera
ENSORLG00000013342	a1cf	100	73.821	ENSCSAG00000007032	A1CF	100	73.821	Chlorocebus_sabaeus
ENSORLG00000013342	a1cf	97	70.132	ENSCHOG00000009089	A1CF	98	70.627	Choloepus_hoffmanni
ENSORLG00000013342	a1cf	100	75.822	ENSCPBG00000026464	A1CF	100	75.822	Chrysemys_picta_bellii
ENSORLG00000013342	a1cf	100	73.821	ENSCANG00000038032	A1CF	100	73.821	Colobus_angolensis_palliatus
ENSORLG00000013342	a1cf	100	72.816	ENSCGRG00001017413	A1cf	100	73.203	Cricetulus_griseus_chok1gshd
ENSORLG00000013342	a1cf	100	73.039	ENSCGRG00000017332	A1cf	100	73.039	Cricetulus_griseus_crigri
ENSORLG00000013342	a1cf	100	80.129	ENSCSEG00000002361	a1cf	100	80.614	Cynoglossus_semilaevis
ENSORLG00000013342	a1cf	100	85.082	ENSCVAG00000010520	a1cf	100	85.410	Cyprinodon_variegatus
ENSORLG00000013342	a1cf	100	77.521	ENSDARG00000002968	a1cf	100	77.851	Danio_rerio
ENSORLG00000013342	a1cf	100	73.948	ENSDNOG00000002829	A1CF	100	74.183	Dasypus_novemcinctus
ENSORLG00000013342	a1cf	79	85.185	ENSETEG00000012527	A1CF	80	85.185	Echinops_telfairi
ENSORLG00000013342	a1cf	100	74.194	ENSEASG00005012924	A1CF	100	74.351	Equus_asinus_asinus
ENSORLG00000013342	a1cf	100	73.871	ENSECAG00000010424	A1CF	100	74.026	Equus_caballus
ENSORLG00000013342	a1cf	81	65.136	ENSEEUG00000000013	A1CF	99	65.136	Erinaceus_europaeus
ENSORLG00000013342	a1cf	100	80.699	ENSELUG00000003159	a1cf	100	80.699	Esox_lucius
ENSORLG00000013342	a1cf	100	73.071	ENSFCAG00000011179	A1CF	100	72.906	Felis_catus
ENSORLG00000013342	a1cf	100	75.413	ENSFALG00000013183	A1CF	100	75.743	Ficedula_albicollis
ENSORLG00000013342	a1cf	100	73.529	ENSFDAG00000019371	A1CF	100	73.856	Fukomys_damarensis
ENSORLG00000013342	a1cf	100	79.180	ENSFHEG00000019652	a1cf	96	90.625	Fundulus_heteroclitus
ENSORLG00000013342	a1cf	100	76.568	ENSGMOG00000018943	a1cf	100	76.733	Gadus_morhua
ENSORLG00000013342	a1cf	95	75.387	ENSGALG00000003765	A1CF	98	75.387	Gallus_gallus
ENSORLG00000013342	a1cf	100	77.036	ENSGAFG00000014868	a1cf	100	77.362	Gambusia_affinis
ENSORLG00000013342	a1cf	100	82.410	ENSGACG00000010241	a1cf	100	82.382	Gasterosteus_aculeatus
ENSORLG00000013342	a1cf	95	75.130	ENSGAGG00000016508	A1CF	97	75.130	Gopherus_agassizii
ENSORLG00000013342	a1cf	100	73.744	ENSGGOG00000009670	A1CF	100	73.813	Gorilla_gorilla
ENSORLG00000013342	a1cf	100	82.927	ENSHBUG00000021959	a1cf	100	83.902	Haplochromis_burtoni
ENSORLG00000013342	a1cf	100	73.786	ENSHGLG00000008955	A1CF	100	74.183	Heterocephalus_glaber_female
ENSORLG00000013342	a1cf	100	73.139	ENSHGLG00100000518	A1CF	100	73.529	Heterocephalus_glaber_male
ENSORLG00000013342	a1cf	100	70.874	ENSHCOG00000017669	a1cf	100	73.139	Hippocampus_comes
ENSORLG00000013342	a1cf	92	82.299	ENSIPUG00000010367	a1cf	99	81.028	Ictalurus_punctatus
ENSORLG00000013342	a1cf	100	84.091	ENSKMAG00000006568	a1cf	100	84.416	Kryptolebias_marmoratus
ENSORLG00000013342	a1cf	99	84.288	ENSLBEG00000020994	a1cf	99	85.106	Labrus_bergylta
ENSORLG00000013342	a1cf	100	76.656	ENSLACG00000008061	A1CF	100	76.656	Latimeria_chalumnae
ENSORLG00000013342	a1cf	100	79.174	ENSLOCG00000006302	a1cf	100	79.339	Lepisosteus_oculatus
ENSORLG00000013342	a1cf	100	73.366	ENSLAFG00000015462	A1CF	100	74.673	Loxodonta_africana
ENSORLG00000013342	a1cf	100	72.683	ENSMFAG00000035948	A1CF	100	72.683	Macaca_fascicularis
ENSORLG00000013342	a1cf	100	72.683	ENSMMUG00000007077	A1CF	100	72.683	Macaca_mulatta
ENSORLG00000013342	a1cf	100	72.520	ENSMNEG00000031454	A1CF	100	72.520	Macaca_nemestrina
ENSORLG00000013342	a1cf	100	73.659	ENSMLEG00000037223	A1CF	100	73.659	Mandrillus_leucophaeus
ENSORLG00000013342	a1cf	100	81.270	ENSMAMG00000010402	a1cf	100	82.410	Mastacembelus_armatus
ENSORLG00000013342	a1cf	100	85.124	ENSMZEG00005013245	a1cf	100	85.124	Maylandia_zebra
ENSORLG00000013342	a1cf	100	75.618	ENSMGAG00000001507	A1CF	100	75.618	Meleagris_gallopavo
ENSORLG00000013342	a1cf	100	72.330	ENSMAUG00000007422	A1cf	100	72.712	Mesocricetus_auratus
ENSORLG00000013342	a1cf	100	71.659	ENSMICG00000003377	A1CF	100	73.008	Microcebus_murinus
ENSORLG00000013342	a1cf	100	73.366	ENSMOCG00000021536	A1cf	100	73.529	Microtus_ochrogaster
ENSORLG00000013342	a1cf	100	76.510	ENSMMOG00000009422	a1cf	100	77.349	Mola_mola
ENSORLG00000013342	a1cf	93	76.225	ENSMODG00000016478	A1CF	99	76.703	Monodelphis_domestica
ENSORLG00000013342	a1cf	100	78.992	ENSMALG00000012992	a1cf	100	78.992	Monopterus_albus
ENSORLG00000013342	a1cf	100	72.330	MGP_CAROLIEiJ_G0022873	A1cf	100	72.712	Mus_caroli
ENSORLG00000013342	a1cf	100	72.330	ENSMUSG00000052595	A1cf	99	81.271	Mus_musculus
ENSORLG00000013342	a1cf	100	72.059	MGP_PahariEiJ_G0014366	A1cf	100	72.059	Mus_pahari
ENSORLG00000013342	a1cf	100	72.313	MGP_SPRETEiJ_G0023792	A1cf	100	72.638	Mus_spretus
ENSORLG00000013342	a1cf	100	67.967	ENSMPUG00000016971	A1CF	100	68.412	Mustela_putorius_furo
ENSORLG00000013342	a1cf	100	73.786	ENSMLUG00000016071	A1CF	100	74.593	Myotis_lucifugus
ENSORLG00000013342	a1cf	100	73.139	ENSNGAG00000015136	A1cf	100	73.693	Nannospalax_galili
ENSORLG00000013342	a1cf	100	82.764	ENSNBRG00000001712	a1cf	100	83.740	Neolamprologus_brichardi
ENSORLG00000013342	a1cf	100	73.948	ENSNLEG00000012028	A1CF	100	73.948	Nomascus_leucogenys
ENSORLG00000013342	a1cf	94	73.693	ENSMEUG00000015909	A1CF	100	73.693	Notamacropus_eugenii
ENSORLG00000013342	a1cf	91	68.889	ENSOPRG00000010667	A1CF	99	67.384	Ochotona_princeps
ENSORLG00000013342	a1cf	100	83.415	ENSONIG00000019105	a1cf	100	83.740	Oreochromis_niloticus
ENSORLG00000013342	a1cf	81	75.934	ENSOANG00000007360	A1CF	99	75.934	Ornithorhynchus_anatinus
ENSORLG00000013342	a1cf	100	72.375	ENSOCUG00000011587	A1CF	100	72.594	Oryctolagus_cuniculus
ENSORLG00000013342	a1cf	100	95.908	ENSORLG00020000586	a1cf	100	95.908	Oryzias_latipes_hni
ENSORLG00000013342	a1cf	100	95.745	ENSORLG00015018569	a1cf	100	95.745	Oryzias_latipes_hsok
ENSORLG00000013342	a1cf	100	90.228	ENSOMEG00000013531	a1cf	100	90.228	Oryzias_melastigma
ENSORLG00000013342	a1cf	100	73.071	ENSOGAG00000012884	A1CF	100	73.650	Otolemur_garnettii
ENSORLG00000013342	a1cf	100	74.510	ENSOARG00000013695	A1CF	100	74.346	Ovis_aries
ENSORLG00000013342	a1cf	98	71.546	ENSPPAG00000028115	A1CF	99	78.585	Pan_paniscus
ENSORLG00000013342	a1cf	100	74.220	ENSPPRG00000012180	A1CF	100	74.056	Panthera_pardus
ENSORLG00000013342	a1cf	100	74.220	ENSPTIG00000021223	A1CF	100	74.056	Panthera_tigris_altaica
ENSORLG00000013342	a1cf	100	73.906	ENSPTRG00000002508	A1CF	100	73.977	Pan_troglodytes
ENSORLG00000013342	a1cf	100	72.683	ENSPANG00000021988	A1CF	100	72.683	Papio_anubis
ENSORLG00000013342	a1cf	100	78.325	ENSPKIG00000025176	a1cf	100	78.454	Paramormyrops_kingsleyae
ENSORLG00000013342	a1cf	100	73.970	ENSPSIG00000010318	A1CF	100	73.970	Pelodiscus_sinensis
ENSORLG00000013342	a1cf	98	69.347	ENSPMGG00000013359	a1cf	99	69.500	Periophthalmus_magnuspinnatus
ENSORLG00000013342	a1cf	100	73.529	ENSPEMG00000015021	A1cf	100	73.529	Peromyscus_maniculatus_bairdii
ENSORLG00000013342	a1cf	100	73.311	ENSPCIG00000002175	A1CF	100	74.342	Phascolarctos_cinereus
ENSORLG00000013342	a1cf	100	85.691	ENSPFOG00000006683	a1cf	100	85.505	Poecilia_formosa
ENSORLG00000013342	a1cf	100	85.691	ENSPFOG00000007437	-	100	85.505	Poecilia_formosa
ENSORLG00000013342	a1cf	100	84.228	ENSPLAG00000001210	-	100	84.039	Poecilia_latipinna
ENSORLG00000013342	a1cf	100	84.228	ENSPLAG00000000026	a1cf	100	84.039	Poecilia_latipinna
ENSORLG00000013342	a1cf	100	76.098	ENSPMEG00000000921	a1cf	100	75.896	Poecilia_mexicana
ENSORLG00000013342	a1cf	100	77.398	ENSPMEG00000015529	-	100	77.199	Poecilia_mexicana
ENSORLG00000013342	a1cf	100	85.016	ENSPREG00000016298	a1cf	100	85.016	Poecilia_reticulata
ENSORLG00000013342	a1cf	100	72.977	ENSPPYG00000002819	A1CF	100	72.977	Pongo_abelii
ENSORLG00000013342	a1cf	79	58.197	ENSPCAG00000006463	A1CF	79	58.197	Procavia_capensis
ENSORLG00000013342	a1cf	100	73.246	ENSPCOG00000024172	A1CF	100	73.829	Propithecus_coquereli
ENSORLG00000013342	a1cf	100	84.390	ENSPNYG00000017944	a1cf	100	85.366	Pundamilia_nyererei
ENSORLG00000013342	a1cf	100	77.724	ENSPNAG00000007704	a1cf	100	78.049	Pygocentrus_nattereri
ENSORLG00000013342	a1cf	100	71.683	ENSRNOG00000033195	A1cf	100	72.059	Rattus_norvegicus
ENSORLG00000013342	a1cf	100	68.882	ENSRBIG00000042892	A1CF	100	70.377	Rhinopithecus_bieti
ENSORLG00000013342	a1cf	100	73.821	ENSRROG00000041398	A1CF	100	73.821	Rhinopithecus_roxellana
ENSORLG00000013342	a1cf	100	73.625	ENSSBOG00000021930	A1CF	100	74.262	Saimiri_boliviensis_boliviensis
ENSORLG00000013342	a1cf	100	74.754	ENSSHAG00000005096	A1CF	100	75.082	Sarcophilus_harrisii
ENSORLG00000013342	a1cf	100	78.699	ENSSFOG00015011774	a1cf	100	79.058	Scleropages_formosus
ENSORLG00000013342	a1cf	100	82.982	ENSSMAG00000013271	a1cf	100	83.117	Scophthalmus_maximus
ENSORLG00000013342	a1cf	100	84.072	ENSSDUG00000013930	a1cf	100	84.072	Seriola_dumerili
ENSORLG00000013342	a1cf	100	75.862	ENSSLDG00000004290	a1cf	100	76.190	Seriola_lalandi_dorsalis
ENSORLG00000013342	a1cf	95	64.906	ENSSARG00000005940	A1CF	95	65.523	Sorex_araneus
ENSORLG00000013342	a1cf	95	74.828	ENSSPUG00000006797	A1CF	95	74.828	Sphenodon_punctatus
ENSORLG00000013342	a1cf	100	74.510	ENSSSCG00000010431	A1CF	100	74.510	Sus_scrofa
ENSORLG00000013342	a1cf	100	75.896	ENSTGUG00000005090	A1CF	100	75.896	Taeniopygia_guttata
ENSORLG00000013342	a1cf	100	81.463	ENSTRUG00000001982	a1cf	100	82.276	Takifugu_rubripes
ENSORLG00000013342	a1cf	100	81.686	ENSTNIG00000003580	a1cf	100	81.686	Tetraodon_nigroviridis
ENSORLG00000013342	a1cf	98	66.778	ENSTTRG00000013190	A1CF	96	67.112	Tursiops_truncatus
ENSORLG00000013342	a1cf	100	72.846	ENSUAMG00000020065	A1CF	100	72.846	Ursus_americanus
ENSORLG00000013342	a1cf	100	74.062	ENSUMAG00000011162	A1CF	100	74.062	Ursus_maritimus
ENSORLG00000013342	a1cf	87	70.950	ENSVPAG00000006130	A1CF	86	70.950	Vicugna_pacos
ENSORLG00000013342	a1cf	100	73.127	ENSVVUG00000002504	A1CF	99	75.943	Vulpes_vulpes
ENSORLG00000013342	a1cf	100	70.909	ENSXETG00000006611	a1cf	100	70.909	Xenopus_tropicalis
ENSORLG00000013342	a1cf	100	84.390	ENSXCOG00000003302	a1cf	100	84.202	Xiphophorus_couchianus
ENSORLG00000013342	a1cf	100	85.691	ENSXMAG00000016703	a1cf	100	85.505	Xiphophorus_maculatus