EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000013544 (Gene tree)
Gene ID: 101172177
Gene Symbol: cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 11126 bases
Position: chr11:25050431-25061556
Accession: 101172177
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000016979	CPSF_A	PF03178.15	4e-94	1	1
ENSORLP00000027997	CPSF_A	PF03178.15	4.2e-94	1	1
ENSORLP00000028807	CPSF_A	PF03178.15	1.9e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000045040	-	1242	-	ENSORLP00000044883	413 (aa)	-	-
ENSORLT00000044531	-	792	-	ENSORLP00000028807	263 (aa)	-	-
ENSORLT00000043327	-	5077	-	ENSORLP00000027997	1493 (aa)	-	-
ENSORLT00000016980	-	4987	XM_011481306	ENSORLP00000016979	1463 (aa)	XP_011479608	H2MEH3

Gene Model

Click here to download ENSORLG00000013544's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000013544's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000013544	cpsf1	92	87.243	ENSG00000071894	CPSF1	100	77.778	Homo_sapiens
ENSORLG00000013544	cpsf1	100	90.693	ENSAPOG00000019621	cpsf1	100	90.829	Acanthochromis_polyacanthus
ENSORLG00000013544	cpsf1	92	87.243	ENSAMEG00000005557	CPSF1	99	76.629	Ailuropoda_melanoleuca
ENSORLG00000013544	cpsf1	100	88.079	ENSACIG00000006112	cpsf1	100	88.215	Amphilophus_citrinellus
ENSORLG00000013544	cpsf1	100	88.295	ENSAOCG00000007120	cpsf1	100	88.363	Amphiprion_ocellaris
ENSORLG00000013544	cpsf1	100	89.107	ENSAPEG00000005755	cpsf1	100	89.310	Amphiprion_percula
ENSORLG00000013544	cpsf1	100	89.824	ENSATEG00000011097	cpsf1	100	90.231	Anabas_testudineus
ENSORLG00000013544	cpsf1	92	81.557	ENSACAG00000009655	CPSF1	100	74.945	Anolis_carolinensis
ENSORLG00000013544	cpsf1	92	87.243	ENSANAG00000036514	CPSF1	100	77.582	Aotus_nancymaae
ENSORLG00000013544	cpsf1	99	89.842	ENSACLG00000012231	cpsf1	99	89.880	Astatotilapia_calliptera
ENSORLG00000013544	cpsf1	100	77.627	ENSAMXG00000008485	cpsf1	100	77.288	Astyanax_mexicanus
ENSORLG00000013544	cpsf1	92	86.831	ENSBTAG00000008355	CPSF1	100	76.939	Bos_taurus
ENSORLG00000013544	cpsf1	91	43.852	WBGene00022301	cpsf-1	99	40.678	Caenorhabditis_elegans
ENSORLG00000013544	cpsf1	92	87.243	ENSCJAG00000021421	CPSF1	100	77.446	Callithrix_jacchus
ENSORLG00000013544	cpsf1	92	87.243	ENSCAFG00000001600	CPSF1	100	77.465	Canis_familiaris
ENSORLG00000013544	cpsf1	92	87.243	ENSCAFG00020020821	CPSF1	100	77.597	Canis_lupus_dingo
ENSORLG00000013544	cpsf1	100	73.810	ENSCHIG00000015833	CPSF1	100	73.469	Capra_hircus
ENSORLG00000013544	cpsf1	92	87.243	ENSTSYG00000028560	CPSF1	100	78.241	Carlito_syrichta
ENSORLG00000013544	cpsf1	92	86.831	ENSCAPG00000014921	CPSF1	98	77.266	Cavia_aperea
ENSORLG00000013544	cpsf1	92	86.831	ENSCPOG00000011448	CPSF1	100	76.139	Cavia_porcellus
ENSORLG00000013544	cpsf1	92	87.243	ENSCCAG00000037658	CPSF1	100	77.982	Cebus_capucinus
ENSORLG00000013544	cpsf1	92	87.243	ENSCATG00000037234	CPSF1	99	78.806	Cercocebus_atys
ENSORLG00000013544	cpsf1	92	86.831	ENSCLAG00000012166	CPSF1	100	77.415	Chinchilla_lanigera
ENSORLG00000013544	cpsf1	92	87.243	ENSCSAG00000008502	CPSF1	100	77.378	Chlorocebus_sabaeus
ENSORLG00000013544	cpsf1	92	89.712	ENSCPBG00000018910	CPSF1	99	78.600	Chrysemys_picta_bellii
ENSORLG00000013544	cpsf1	96	48.198	ENSCING00000000514	-	100	48.057	Ciona_intestinalis
ENSORLG00000013544	cpsf1	99	48.509	ENSCSAVG00000002293	-	98	52.582	Ciona_savignyi
ENSORLG00000013544	cpsf1	98	74.913	ENSCANG00000032760	CPSF1	100	78.241	Colobus_angolensis_palliatus
ENSORLG00000013544	cpsf1	92	86.831	ENSCGRG00001016344	Cpsf1	100	77.566	Cricetulus_griseus_chok1gshd
ENSORLG00000013544	cpsf1	92	86.831	ENSCGRG00000003118	Cpsf1	100	75.799	Cricetulus_griseus_crigri
ENSORLG00000013544	cpsf1	100	85.422	ENSCSEG00000013464	cpsf1	99	87.582	Cynoglossus_semilaevis
ENSORLG00000013544	cpsf1	92	95.885	ENSCVAG00000014059	cpsf1	100	83.333	Cyprinodon_variegatus
ENSORLG00000013544	cpsf1	100	85.977	ENSDARG00000034178	cpsf1	100	85.977	Danio_rerio
ENSORLG00000013544	cpsf1	60	74.359	ENSDNOG00000043654	CPSF1	97	74.872	Dasypus_novemcinctus
ENSORLG00000013544	cpsf1	92	86.831	ENSDORG00000006278	Cpsf1	99	78.132	Dipodomys_ordii
ENSORLG00000013544	cpsf1	92	55.144	FBgn0024698	Cpsf160	100	43.556	Drosophila_melanogaster
ENSORLG00000013544	cpsf1	81	81.879	ENSETEG00000006022	CPSF1	83	81.879	Echinops_telfairi
ENSORLG00000013544	cpsf1	92	81.481	ENSEBUG00000006844	-	98	75.521	Eptatretus_burgeri
ENSORLG00000013544	cpsf1	92	87.243	ENSEASG00005010774	CPSF1	100	77.868	Equus_asinus_asinus
ENSORLG00000013544	cpsf1	92	87.243	ENSECAG00000022209	CPSF1	100	77.733	Equus_caballus
ENSORLG00000013544	cpsf1	92	87.243	ENSEEUG00000000471	CPSF1	100	77.001	Erinaceus_europaeus
ENSORLG00000013544	cpsf1	100	84.377	ENSELUG00000012271	cpsf1	100	84.362	Esox_lucius
ENSORLG00000013544	cpsf1	92	86.831	ENSFDAG00000016060	CPSF1	100	77.483	Fukomys_damarensis
ENSORLG00000013544	cpsf1	100	88.730	ENSFHEG00000016801	cpsf1	100	88.618	Fundulus_heteroclitus
ENSORLG00000013544	cpsf1	100	85.394	ENSGMOG00000000796	cpsf1	100	85.220	Gadus_morhua
ENSORLG00000013544	cpsf1	94	94.355	ENSGAFG00000018890	cpsf1	100	89.286	Gambusia_affinis
ENSORLG00000013544	cpsf1	100	87.797	ENSGACG00000008703	cpsf1	100	87.763	Gasterosteus_aculeatus
ENSORLG00000013544	cpsf1	100	76.949	ENSGAGG00000004276	CPSF1	98	80.640	Gopherus_agassizii
ENSORLG00000013544	cpsf1	94	58.871	ENSGGOG00000040487	-	100	62.500	Gorilla_gorilla
ENSORLG00000013544	cpsf1	92	87.243	ENSGGOG00000016185	CPSF1	100	77.778	Gorilla_gorilla
ENSORLG00000013544	cpsf1	100	89.405	ENSHBUG00000018900	cpsf1	100	89.405	Haplochromis_burtoni
ENSORLG00000013544	cpsf1	92	86.831	ENSHGLG00000016139	CPSF1	100	77.415	Heterocephalus_glaber_female
ENSORLG00000013544	cpsf1	92	86.831	ENSHGLG00100009750	CPSF1	100	77.415	Heterocephalus_glaber_male
ENSORLG00000013544	cpsf1	100	87.935	ENSHCOG00000018509	cpsf1	100	88.003	Hippocampus_comes
ENSORLG00000013544	cpsf1	100	81.153	ENSIPUG00000011259	cpsf1	100	81.153	Ictalurus_punctatus
ENSORLG00000013544	cpsf1	92	86.831	ENSSTOG00000009957	CPSF1	98	77.856	Ictidomys_tridecemlineatus
ENSORLG00000013544	cpsf1	92	86.831	ENSJJAG00000023002	Cpsf1	100	77.634	Jaculus_jaculus
ENSORLG00000013544	cpsf1	91	94.044	ENSKMAG00000001940	cpsf1	99	94.044	Kryptolebias_marmoratus
ENSORLG00000013544	cpsf1	100	87.679	ENSLBEG00000003601	cpsf1	100	88.571	Labrus_bergylta
ENSORLG00000013544	cpsf1	92	89.300	ENSLACG00000000233	CPSF1	92	78.469	Latimeria_chalumnae
ENSORLG00000013544	cpsf1	92	91.770	ENSLOCG00000008484	cpsf1	100	81.682	Lepisosteus_oculatus
ENSORLG00000013544	cpsf1	92	87.654	ENSLAFG00000022601	CPSF1	99	77.959	Loxodonta_africana
ENSORLG00000013544	cpsf1	92	87.243	ENSMFAG00000037013	CPSF1	99	78.806	Macaca_fascicularis
ENSORLG00000013544	cpsf1	92	87.243	ENSMMUG00000007380	CPSF1	100	77.778	Macaca_mulatta
ENSORLG00000013544	cpsf1	92	87.243	ENSMNEG00000043564	CPSF1	100	77.778	Macaca_nemestrina
ENSORLG00000013544	cpsf1	92	87.243	ENSMLEG00000043010	CPSF1	99	78.806	Mandrillus_leucophaeus
ENSORLG00000013544	cpsf1	100	90.761	ENSMAMG00000003803	cpsf1	100	90.761	Mastacembelus_armatus
ENSORLG00000013544	cpsf1	100	85.919	ENSMZEG00005001168	cpsf1	100	85.919	Maylandia_zebra
ENSORLG00000013544	cpsf1	92	87.243	ENSMAUG00000003601	Cpsf1	100	77.430	Mesocricetus_auratus
ENSORLG00000013544	cpsf1	92	87.243	ENSMICG00000015767	CPSF1	100	77.430	Microcebus_murinus
ENSORLG00000013544	cpsf1	92	86.831	ENSMOCG00000022758	Cpsf1	100	77.362	Microtus_ochrogaster
ENSORLG00000013544	cpsf1	100	88.571	ENSMMOG00000021245	cpsf1	100	88.435	Mola_mola
ENSORLG00000013544	cpsf1	92	87.654	ENSMODG00000010755	CPSF1	100	78.305	Monodelphis_domestica
ENSORLG00000013544	cpsf1	100	89.932	ENSMALG00000020545	cpsf1	100	90.204	Monopterus_albus
ENSORLG00000013544	cpsf1	92	86.831	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.634	Mus_caroli
ENSORLG00000013544	cpsf1	92	86.831	ENSMUSG00000034022	Cpsf1	100	77.634	Mus_musculus
ENSORLG00000013544	cpsf1	92	86.831	MGP_PahariEiJ_G0019946	Cpsf1	100	77.634	Mus_pahari
ENSORLG00000013544	cpsf1	92	86.831	MGP_SPRETEiJ_G0020839	Cpsf1	100	77.702	Mus_spretus
ENSORLG00000013544	cpsf1	92	86.420	ENSMPUG00000006419	CPSF1	96	76.615	Mustela_putorius_furo
ENSORLG00000013544	cpsf1	92	86.831	ENSNGAG00000022460	Cpsf1	100	77.702	Nannospalax_galili
ENSORLG00000013544	cpsf1	92	93.004	ENSNBRG00000000813	cpsf1	100	82.935	Neolamprologus_brichardi
ENSORLG00000013544	cpsf1	80	85.987	ENSNLEG00000010633	-	94	85.987	Nomascus_leucogenys
ENSORLG00000013544	cpsf1	82	84.302	ENSMEUG00000014922	CPSF1	84	84.302	Notamacropus_eugenii
ENSORLG00000013544	cpsf1	61	86.772	ENSOPRG00000004693	-	70	86.772	Ochotona_princeps
ENSORLG00000013544	cpsf1	92	86.831	ENSODEG00000013995	CPSF1	100	77.483	Octodon_degus
ENSORLG00000013544	cpsf1	100	88.980	ENSONIG00000007676	cpsf1	100	89.116	Oreochromis_niloticus
ENSORLG00000013544	cpsf1	59	78.571	ENSOANG00000010716	CPSF1	89	78.571	Ornithorhynchus_anatinus
ENSORLG00000013544	cpsf1	100	99.799	ENSORLG00020021693	cpsf1	100	99.799	Oryzias_latipes_hni
ENSORLG00000013544	cpsf1	100	99.658	ENSORLG00015009979	cpsf1	100	99.658	Oryzias_latipes_hsok
ENSORLG00000013544	cpsf1	100	95.970	ENSOMEG00000011849	cpsf1	100	95.902	Oryzias_melastigma
ENSORLG00000013544	cpsf1	92	87.243	ENSOGAG00000000315	CPSF1	100	77.717	Otolemur_garnettii
ENSORLG00000013544	cpsf1	54	70.139	ENSOARG00000013594	-	93	75.299	Ovis_aries
ENSORLG00000013544	cpsf1	92	87.243	ENSPPAG00000019280	CPSF1	100	78.733	Pan_paniscus
ENSORLG00000013544	cpsf1	94	58.468	ENSPPAG00000042686	-	76	58.468	Pan_paniscus
ENSORLG00000013544	cpsf1	92	87.243	ENSPTRG00000051253	-	100	78.733	Pan_troglodytes
ENSORLG00000013544	cpsf1	92	87.243	ENSPTRG00000049288	-	100	78.733	Pan_troglodytes
ENSORLG00000013544	cpsf1	92	87.243	ENSPANG00000015005	CPSF1	100	77.778	Papio_anubis
ENSORLG00000013544	cpsf1	100	84.636	ENSPKIG00000002582	cpsf1	100	84.878	Paramormyrops_kingsleyae
ENSORLG00000013544	cpsf1	92	87.654	ENSPCIG00000009035	CPSF1	100	78.441	Phascolarctos_cinereus
ENSORLG00000013544	cpsf1	100	90.551	ENSPFOG00000012870	cpsf1	100	90.959	Poecilia_formosa
ENSORLG00000013544	cpsf1	90	97.479	ENSPLAG00000022739	-	95	97.479	Poecilia_latipinna
ENSORLG00000013544	cpsf1	95	93.976	ENSPMEG00000019534	-	99	93.976	Poecilia_mexicana
ENSORLG00000013544	cpsf1	100	90.625	ENSPREG00000016307	cpsf1	100	91.033	Poecilia_reticulata
ENSORLG00000013544	cpsf1	92	87.243	ENSPPYG00000018973	CPSF1	100	70.401	Pongo_abelii
ENSORLG00000013544	cpsf1	91	83.523	ENSPCAG00000011541	CPSF1	93	83.523	Procavia_capensis
ENSORLG00000013544	cpsf1	100	74.185	ENSPCOG00000020001	CPSF1	100	77.778	Propithecus_coquereli
ENSORLG00000013544	cpsf1	91	86.000	ENSPVAG00000006761	CPSF1	91	86.000	Pteropus_vampyrus
ENSORLG00000013544	cpsf1	100	90.007	ENSPNYG00000004906	cpsf1	100	90.007	Pundamilia_nyererei
ENSORLG00000013544	cpsf1	92	91.770	ENSPNAG00000024395	cpsf1	100	79.782	Pygocentrus_nattereri
ENSORLG00000013544	cpsf1	92	86.831	ENSRNOG00000030705	Cpsf1	100	77.536	Rattus_norvegicus
ENSORLG00000013544	cpsf1	92	87.243	ENSRBIG00000044907	CPSF1	100	78.241	Rhinopithecus_bieti
ENSORLG00000013544	cpsf1	92	87.243	ENSRROG00000044861	CPSF1	100	78.241	Rhinopithecus_roxellana
ENSORLG00000013544	cpsf1	92	87.243	ENSSBOG00000027177	CPSF1	99	78.076	Saimiri_boliviensis_boliviensis
ENSORLG00000013544	cpsf1	92	87.243	ENSSHAG00000006500	CPSF1	100	78.305	Sarcophilus_harrisii
ENSORLG00000013544	cpsf1	92	93.004	ENSSFOG00015004606	cpsf1	100	84.968	Scleropages_formosus
ENSORLG00000013544	cpsf1	100	89.274	ENSSMAG00000020547	cpsf1	100	89.613	Scophthalmus_maximus
ENSORLG00000013544	cpsf1	100	89.276	ENSSDUG00000001100	cpsf1	100	89.481	Seriola_dumerili
ENSORLG00000013544	cpsf1	100	89.344	ENSSLDG00000003619	cpsf1	100	89.413	Seriola_lalandi_dorsalis
ENSORLG00000013544	cpsf1	92	86.831	ENSSARG00000003643	CPSF1	92	74.171	Sorex_araneus
ENSORLG00000013544	cpsf1	92	90.947	ENSSPUG00000014396	CPSF1	100	81.259	Sphenodon_punctatus
ENSORLG00000013544	cpsf1	100	90.149	ENSSPAG00000005349	cpsf1	100	90.625	Stegastes_partitus
ENSORLG00000013544	cpsf1	92	86.831	ENSSSCG00000005906	CPSF1	100	76.866	Sus_scrofa
ENSORLG00000013544	cpsf1	92	92.181	ENSTRUG00000013134	cpsf1	99	87.941	Takifugu_rubripes
ENSORLG00000013544	cpsf1	100	87.678	ENSTNIG00000014027	cpsf1	100	87.542	Tetraodon_nigroviridis
ENSORLG00000013544	cpsf1	65	85.882	ENSTBEG00000001756	CPSF1	91	70.443	Tupaia_belangeri
ENSORLG00000013544	cpsf1	92	86.831	ENSTTRG00000001937	CPSF1	90	83.103	Tursiops_truncatus
ENSORLG00000013544	cpsf1	92	87.243	ENSUAMG00000006476	CPSF1	97	78.313	Ursus_americanus
ENSORLG00000013544	cpsf1	100	89.405	ENSXCOG00000003608	cpsf1	100	89.542	Xiphophorus_couchianus
ENSORLG00000013544	cpsf1	100	88.593	ENSXMAG00000005798	cpsf1	100	88.934	Xiphophorus_maculatus