EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000013810 (Gene tree)
Gene ID: 101162589
Gene Symbol: chd9
Alias: -
Full Name: chromodomain helicase DNA binding protein 9
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 77089 bases
Position: chr3:29611494-29688582
Accession: 101162589
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000017318	ResIII	PF04851.15	8.4e-06	1	1
ENSORLP00000036398	ResIII	PF04851.15	9.7e-06	1	1
ENSORLP00000017318	BRK	PF07533.16	6.8e-32	1	2
ENSORLP00000017318	BRK	PF07533.16	6.8e-32	2	2
ENSORLP00000036398	BRK	PF07533.16	1.1e-31	1	2
ENSORLP00000036398	BRK	PF07533.16	1.1e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000033303	-	14623	XM_011493380	ENSORLP00000036398	3018 (aa)	XP_011491682	UPI0005CB98FB
ENSORLT00000017319	-	7377	-	ENSORLP00000017318	2458 (aa)	-	H2MFE6

Gene Model

Click here to download ENSORLG00000013810's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000013810's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000013810	chd9	72	60.861	ENSORLG00000012103	chd8	70	61.783
ENSORLG00000013810	chd9	80	64.854	ENSORLG00000013492	chd7	59	69.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000013810	chd9	94	68.896	ENSG00000177200	CHD9	97	68.311	Homo_sapiens
ENSORLG00000013810	chd9	97	85.592	ENSAPOG00000023034	chd9	97	88.144	Acanthochromis_polyacanthus
ENSORLG00000013810	chd9	67	74.910	ENSAMEG00000016232	CHD9	84	70.763	Ailuropoda_melanoleuca
ENSORLG00000013810	chd9	94	83.732	ENSACIG00000004097	chd9	95	77.566	Amphilophus_citrinellus
ENSORLG00000013810	chd9	97	86.081	ENSAOCG00000005487	chd9	97	88.510	Amphiprion_ocellaris
ENSORLG00000013810	chd9	97	86.081	ENSAPEG00000009859	chd9	97	88.307	Amphiprion_percula
ENSORLG00000013810	chd9	96	87.422	ENSATEG00000002748	chd9	97	84.173	Anabas_testudineus
ENSORLG00000013810	chd9	94	70.561	ENSAPLG00000002826	CHD9	79	69.710	Anas_platyrhynchos
ENSORLG00000013810	chd9	69	73.832	ENSACAG00000016150	CHD9	78	69.996	Anolis_carolinensis
ENSORLG00000013810	chd9	94	68.857	ENSANAG00000015630	CHD9	92	70.139	Aotus_nancymaae
ENSORLG00000013810	chd9	97	83.408	ENSACLG00000016899	chd9	97	77.763	Astatotilapia_calliptera
ENSORLG00000013810	chd9	98	74.950	ENSAMXG00000005652	chd9	97	77.276	Astyanax_mexicanus
ENSORLG00000013810	chd9	67	74.567	ENSBTAG00000002287	CHD9	84	70.042	Bos_taurus
ENSORLG00000013810	chd9	99	59.680	ENSCJAG00000001573	CHD9	92	70.486	Callithrix_jacchus
ENSORLG00000013810	chd9	67	74.552	ENSCAFG00000009699	CHD9	84	70.625	Canis_familiaris
ENSORLG00000013810	chd9	67	74.552	ENSCAFG00020002879	CHD9	91	70.732	Canis_lupus_dingo
ENSORLG00000013810	chd9	98	66.220	ENSCHIG00000021000	CHD9	56	74.407	Capra_hircus
ENSORLG00000013810	chd9	67	74.432	ENSTSYG00000007693	CHD9	92	70.070	Carlito_syrichta
ENSORLG00000013810	chd9	72	60.135	ENSCAPG00000011604	CHD9	61	60.426	Cavia_aperea
ENSORLG00000013810	chd9	99	57.263	ENSCPOG00000036544	CHD9	84	66.234	Cavia_porcellus
ENSORLG00000013810	chd9	94	68.968	ENSCCAG00000036178	CHD9	92	70.732	Cebus_capucinus
ENSORLG00000013810	chd9	67	74.761	ENSCATG00000036753	CHD9	92	69.863	Cercocebus_atys
ENSORLG00000013810	chd9	99	60.084	ENSCLAG00000007137	CHD9	96	80.476	Chinchilla_lanigera
ENSORLG00000013810	chd9	67	74.702	ENSCSAG00000005311	CHD9	84	70.448	Chlorocebus_sabaeus
ENSORLG00000013810	chd9	70	91.667	ENSCHOG00000003935	CHD9	54	91.623	Choloepus_hoffmanni
ENSORLG00000013810	chd9	87	81.981	ENSCPBG00000012459	CHD9	84	79.330	Chrysemys_picta_bellii
ENSORLG00000013810	chd9	67	74.821	ENSCANG00000030349	CHD9	92	70.175	Colobus_angolensis_palliatus
ENSORLG00000013810	chd9	97	61.066	ENSCGRG00001016150	Chd9	84	70.168	Cricetulus_griseus_chok1gshd
ENSORLG00000013810	chd9	97	61.066	ENSCGRG00000012850	Chd9	99	77.989	Cricetulus_griseus_crigri
ENSORLG00000013810	chd9	96	82.664	ENSCSEG00000009209	chd9	96	83.368	Cynoglossus_semilaevis
ENSORLG00000013810	chd9	94	85.793	ENSCVAG00000016195	chd9	97	80.491	Cyprinodon_variegatus
ENSORLG00000013810	chd9	69	79.791	ENSDARG00000074498	chd9	97	76.746	Danio_rerio
ENSORLG00000013810	chd9	77	70.287	ENSDNOG00000006045	CHD9	97	70.322	Dasypus_novemcinctus
ENSORLG00000013810	chd9	66	69.438	ENSDORG00000008523	-	96	69.338	Dipodomys_ordii
ENSORLG00000013810	chd9	88	91.270	ENSETEG00000009565	CHD9	76	91.270	Echinops_telfairi
ENSORLG00000013810	chd9	88	77.616	ENSEASG00005014832	CHD9	94	79.721	Equus_asinus_asinus
ENSORLG00000013810	chd9	67	74.671	ENSECAG00000011505	CHD9	80	70.330	Equus_caballus
ENSORLG00000013810	chd9	80	85.652	ENSEEUG00000014515	CHD9	70	85.652	Erinaceus_europaeus
ENSORLG00000013810	chd9	85	78.157	ENSELUG00000006031	chd9	96	77.106	Esox_lucius
ENSORLG00000013810	chd9	67	74.612	ENSFCAG00000022534	CHD9	92	70.775	Felis_catus
ENSORLG00000013810	chd9	79	70.235	ENSFALG00000013276	CHD9	97	68.320	Ficedula_albicollis
ENSORLG00000013810	chd9	98	67.193	ENSFDAG00000021037	CHD9	85	70.017	Fukomys_damarensis
ENSORLG00000013810	chd9	96	85.602	ENSFHEG00000006068	chd9	96	88.136	Fundulus_heteroclitus
ENSORLG00000013810	chd9	80	85.685	ENSGMOG00000006040	chd9	81	84.959	Gadus_morhua
ENSORLG00000013810	chd9	90	66.795	ENSGALG00000039178	CHD9	86	71.773	Gallus_gallus
ENSORLG00000013810	chd9	96	85.591	ENSGAFG00000010014	chd9	96	87.866	Gambusia_affinis
ENSORLG00000013810	chd9	67	74.821	ENSGGOG00000014816	CHD9	92	70.139	Gorilla_gorilla
ENSORLG00000013810	chd9	97	85.545	ENSHBUG00000023322	chd9	96	86.881	Haplochromis_burtoni
ENSORLG00000013810	chd9	99	59.786	ENSHGLG00000014938	CHD9	96	80.476	Heterocephalus_glaber_female
ENSORLG00000013810	chd9	96	81.047	ENSHCOG00000000937	chd9	97	81.762	Hippocampus_comes
ENSORLG00000013810	chd9	97	77.600	ENSIPUG00000016448	chd9	96	78.332	Ictalurus_punctatus
ENSORLG00000013810	chd9	94	68.855	ENSSTOG00000022273	CHD9	99	75.893	Ictidomys_tridecemlineatus
ENSORLG00000013810	chd9	66	69.815	ENSJJAG00000015741	-	96	69.741	Jaculus_jaculus
ENSORLG00000013810	chd9	96	85.118	ENSKMAG00000016784	chd9	96	88.264	Kryptolebias_marmoratus
ENSORLG00000013810	chd9	96	85.503	ENSLBEG00000012077	chd9	96	87.588	Labrus_bergylta
ENSORLG00000013810	chd9	98	63.575	ENSLACG00000005557	CHD9	84	65.930	Latimeria_chalumnae
ENSORLG00000013810	chd9	96	74.897	ENSLOCG00000007225	chd9	96	75.791	Lepisosteus_oculatus
ENSORLG00000013810	chd9	67	74.030	ENSLAFG00000015374	CHD9	84	69.796	Loxodonta_africana
ENSORLG00000013810	chd9	67	74.761	ENSMFAG00000041354	CHD9	95	70.259	Macaca_fascicularis
ENSORLG00000013810	chd9	67	74.761	ENSMMUG00000016310	CHD9	92	70.175	Macaca_mulatta
ENSORLG00000013810	chd9	89	61.588	ENSMNEG00000031494	CHD9	85	72.230	Macaca_nemestrina
ENSORLG00000013810	chd9	67	74.761	ENSMLEG00000043219	CHD9	92	70.175	Mandrillus_leucophaeus
ENSORLG00000013810	chd9	96	86.411	ENSMAMG00000003909	chd9	97	82.988	Mastacembelus_armatus
ENSORLG00000013810	chd9	97	86.806	ENSMZEG00005006581	chd9	96	88.449	Maylandia_zebra
ENSORLG00000013810	chd9	94	66.276	ENSMGAG00000004642	CHD9	59	72.551	Meleagris_gallopavo
ENSORLG00000013810	chd9	67	74.910	ENSMICG00000016679	CHD9	92	70.423	Microcebus_murinus
ENSORLG00000013810	chd9	94	84.596	ENSMMOG00000016406	chd9	97	76.698	Mola_mola
ENSORLG00000013810	chd9	86	64.781	ENSMODG00000013142	-	96	76.416	Monodelphis_domestica
ENSORLG00000013810	chd9	94	84.541	ENSMALG00000013306	chd9	81	83.389	Monopterus_albus
ENSORLG00000013810	chd9	67	73.822	MGP_CAROLIEiJ_G0031364	Chd9	84	69.538	Mus_caroli
ENSORLG00000013810	chd9	98	66.964	ENSMUSG00000056608	Chd9	99	76.897	Mus_musculus
ENSORLG00000013810	chd9	97	59.310	MGP_PahariEiJ_G0022964	Chd9	84	68.414	Mus_pahari
ENSORLG00000013810	chd9	67	73.970	MGP_SPRETEiJ_G0032483	Chd9	84	69.541	Mus_spretus
ENSORLG00000013810	chd9	67	74.731	ENSMPUG00000003285	CHD9	84	70.332	Mustela_putorius_furo
ENSORLG00000013810	chd9	97	60.487	ENSMLUG00000004456	CHD9	84	69.067	Myotis_lucifugus
ENSORLG00000013810	chd9	97	84.890	ENSNBRG00000009423	chd9	96	87.830	Neolamprologus_brichardi
ENSORLG00000013810	chd9	89	61.544	ENSNLEG00000001026	CHD9	85	72.186	Nomascus_leucogenys
ENSORLG00000013810	chd9	68	95.489	ENSMEUG00000008222	-	74	88.125	Notamacropus_eugenii
ENSORLG00000013810	chd9	55	95.489	ENSOPRG00000011168	CHD9	70	86.034	Ochotona_princeps
ENSORLG00000013810	chd9	99	60.195	ENSODEG00000004466	CHD9	84	69.698	Octodon_degus
ENSORLG00000013810	chd9	95	85.458	ENSONIG00000002816	chd9	96	88.089	Oreochromis_niloticus
ENSORLG00000013810	chd9	66	76.909	ENSOANG00000013401	CHD9	84	70.682	Ornithorhynchus_anatinus
ENSORLG00000013810	chd9	99	67.026	ENSOCUG00000001016	CHD9	96	68.958	Oryctolagus_cuniculus
ENSORLG00000013810	chd9	99	94.578	ENSORLG00020020665	chd9	99	90.809	Oryzias_latipes_hni
ENSORLG00000013810	chd9	100	98.580	ENSORLG00015019126	chd9	100	98.580	Oryzias_latipes_hsok
ENSORLG00000013810	chd9	63	88.964	ENSOMEG00000015978	chd9	99	88.612	Oryzias_melastigma
ENSORLG00000013810	chd9	99	59.850	ENSOGAG00000002110	CHD9	79	70.117	Otolemur_garnettii
ENSORLG00000013810	chd9	67	74.434	ENSOARG00000017664	CHD9	84	69.887	Ovis_aries
ENSORLG00000013810	chd9	79	68.564	ENSPPAG00000039388	-	96	69.501	Pan_paniscus
ENSORLG00000013810	chd9	67	74.612	ENSPPRG00000004801	CHD9	92	70.423	Panthera_pardus
ENSORLG00000013810	chd9	67	72.939	ENSPTIG00000021854	CHD9	92	61.268	Panthera_tigris_altaica
ENSORLG00000013810	chd9	97	60.713	ENSPTRG00000008113	CHD9	92	70.139	Pan_troglodytes
ENSORLG00000013810	chd9	79	69.183	ENSPANG00000019307	CHD9	97	68.598	Papio_anubis
ENSORLG00000013810	chd9	97	74.437	ENSPKIG00000021876	chd9	96	76.933	Paramormyrops_kingsleyae
ENSORLG00000013810	chd9	97	70.654	ENSPKIG00000025401	-	97	63.001	Paramormyrops_kingsleyae
ENSORLG00000013810	chd9	55	78.322	ENSPSIG00000008099	CHD9	78	78.714	Pelodiscus_sinensis
ENSORLG00000013810	chd9	50	69.064	ENSPMAG00000006035	-	85	69.607	Petromyzon_marinus
ENSORLG00000013810	chd9	87	70.963	ENSPCIG00000017215	CHD9	99	70.279	Phascolarctos_cinereus
ENSORLG00000013810	chd9	97	82.965	ENSPFOG00000015839	chd9	98	82.839	Poecilia_formosa
ENSORLG00000013810	chd9	97	86.380	ENSPLAG00000011118	chd9	97	87.985	Poecilia_latipinna
ENSORLG00000013810	chd9	97	80.211	ENSPMEG00000015106	chd9	97	80.175	Poecilia_mexicana
ENSORLG00000013810	chd9	96	86.002	ENSPREG00000006473	chd9	97	87.582	Poecilia_reticulata
ENSORLG00000013810	chd9	97	60.681	ENSPPYG00000007348	CHD9	84	70.214	Pongo_abelii
ENSORLG00000013810	chd9	72	79.599	ENSPCAG00000007564	CHD9	73	81.562	Procavia_capensis
ENSORLG00000013810	chd9	67	72.401	ENSPCOG00000028433	CHD9	92	69.718	Propithecus_coquereli
ENSORLG00000013810	chd9	96	57.672	ENSPVAG00000015617	CHD9	81	74.104	Pteropus_vampyrus
ENSORLG00000013810	chd9	97	85.534	ENSPNYG00000010947	chd9	96	88.692	Pundamilia_nyererei
ENSORLG00000013810	chd9	96	76.933	ENSPNAG00000024141	chd9	97	77.293	Pygocentrus_nattereri
ENSORLG00000013810	chd9	89	59.392	ENSRNOG00000049302	Chd9	94	56.878	Rattus_norvegicus
ENSORLG00000013810	chd9	79	69.183	ENSRBIG00000035553	CHD9	95	70.381	Rhinopithecus_bieti
ENSORLG00000013810	chd9	78	69.916	ENSRROG00000033278	CHD9	96	70.532	Rhinopithecus_roxellana
ENSORLG00000013810	chd9	94	69.108	ENSSBOG00000030240	CHD9	92	70.486	Saimiri_boliviensis_boliviensis
ENSORLG00000013810	chd9	99	60.345	ENSSHAG00000002719	CHD9	84	69.828	Sarcophilus_harrisii
ENSORLG00000013810	chd9	98	72.727	ENSSFOG00015001327	chd9	97	73.715	Scleropages_formosus
ENSORLG00000013810	chd9	96	76.058	ENSSFOG00015020209	chd9	97	76.933	Scleropages_formosus
ENSORLG00000013810	chd9	96	86.108	ENSSMAG00000008953	chd9	96	88.696	Scophthalmus_maximus
ENSORLG00000013810	chd9	96	87.683	ENSSDUG00000006139	chd9	96	88.398	Seriola_dumerili
ENSORLG00000013810	chd9	96	86.980	ENSSLDG00000017818	chd9	96	89.100	Seriola_lalandi_dorsalis
ENSORLG00000013810	chd9	70	77.704	ENSSARG00000010632	CHD9	53	77.787	Sorex_araneus
ENSORLG00000013810	chd9	97	86.203	ENSSPAG00000021649	chd9	97	88.553	Stegastes_partitus
ENSORLG00000013810	chd9	98	66.680	ENSSSCG00000033591	CHD9	57	75.152	Sus_scrofa
ENSORLG00000013810	chd9	77	67.977	ENSTGUG00000007476	CHD9	80	72.076	Taeniopygia_guttata
ENSORLG00000013810	chd9	99	82.167	ENSTRUG00000009125	chd9	97	77.774	Takifugu_rubripes
ENSORLG00000013810	chd9	68	86.124	ENSTNIG00000003825	chd9	84	98.817	Tetraodon_nigroviridis
ENSORLG00000013810	chd9	62	94.915	ENSTBEG00000016052	-	66	94.915	Tupaia_belangeri
ENSORLG00000013810	chd9	84	74.253	ENSTTRG00000012674	CHD9	77	71.016	Tursiops_truncatus
ENSORLG00000013810	chd9	78	85.430	ENSUMAG00000004043	CHD9	93	85.998	Ursus_maritimus
ENSORLG00000013810	chd9	70	76.000	ENSVPAG00000001374	CHD9	81	69.268	Vicugna_pacos
ENSORLG00000013810	chd9	67	74.492	ENSVVUG00000019435	CHD9	84	70.583	Vulpes_vulpes
ENSORLG00000013810	chd9	96	66.872	ENSXETG00000000349	chd9	77	74.603	Xenopus_tropicalis
ENSORLG00000013810	chd9	96	86.213	ENSXCOG00000012997	chd9	96	87.495	Xiphophorus_couchianus
ENSORLG00000013810	chd9	96	86.337	ENSXMAG00000016192	chd9	96	88.809	Xiphophorus_maculatus