EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000013893 (Gene tree)
Gene ID: 101163450
Gene Symbol: cpsf6
Alias: -
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 13307 bases
Position: chr23:14381579-14394885
Accession: 101163450
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000017418	RRM_1	PF00076.22	1.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000017419	-	2268	XM_004083031	ENSORLP00000017418	551 (aa)	XP_004083079	A0A1S7IWT3

Gene Model

Click here to download ENSORLG00000013893's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000013893's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000013893	cpsf6	69	35.498	ENSORLG00000006495	CPSF7	72	40.341

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000013893	cpsf6	68	54.167	ENSG00000149532	CPSF7	91	59.589	Homo_sapiens
ENSORLG00000013893	cpsf6	94	73.481	ENSG00000111605	CPSF6	94	82.857	Homo_sapiens
ENSORLG00000013893	cpsf6	58	40.000	ENSAOCG00000012357	CPSF7	62	51.724	Amphiprion_ocellaris
ENSORLG00000013893	cpsf6	59	38.554	ENSAPEG00000015375	CPSF7	62	51.724	Amphiprion_percula
ENSORLG00000013893	cpsf6	91	72.762	ENSANAG00000019240	CPSF6	93	82.446	Aotus_nancymaae
ENSORLG00000013893	cpsf6	64	49.495	ENSANAG00000024635	CPSF7	69	49.451	Aotus_nancymaae
ENSORLG00000013893	cpsf6	62	92.814	ENSAMXG00000016745	CPSF6	75	92.121	Astyanax_mexicanus
ENSORLG00000013893	cpsf6	94	73.481	ENSBTAG00000007323	CPSF6	94	82.857	Bos_taurus
ENSORLG00000013893	cpsf6	65	54.688	ENSBTAG00000015263	CPSF7	71	54.545	Bos_taurus
ENSORLG00000013893	cpsf6	68	54.167	ENSCJAG00000019282	CPSF7	79	59.864	Callithrix_jacchus
ENSORLG00000013893	cpsf6	94	73.481	ENSCJAG00000001798	CPSF6	94	82.857	Callithrix_jacchus
ENSORLG00000013893	cpsf6	91	72.710	ENSCAFG00000000424	CPSF6	91	82.411	Canis_familiaris
ENSORLG00000013893	cpsf6	65	54.688	ENSCAFG00000016152	CPSF7	71	55.114	Canis_familiaris
ENSORLG00000013893	cpsf6	94	73.481	ENSCAFG00020016950	CPSF6	94	82.857	Canis_lupus_dingo
ENSORLG00000013893	cpsf6	65	54.688	ENSCAFG00020012753	CPSF7	71	55.114	Canis_lupus_dingo
ENSORLG00000013893	cpsf6	65	54.688	ENSCHIG00000014655	CPSF7	71	54.545	Capra_hircus
ENSORLG00000013893	cpsf6	94	73.481	ENSCHIG00000010792	CPSF6	94	82.857	Capra_hircus
ENSORLG00000013893	cpsf6	65	54.688	ENSTSYG00000010138	-	71	55.114	Carlito_syrichta
ENSORLG00000013893	cpsf6	83	82.692	ENSTSYG00000008591	CPSF6	91	82.376	Carlito_syrichta
ENSORLG00000013893	cpsf6	53	61.268	ENSCAPG00000006384	CPSF7	70	57.558	Cavia_aperea
ENSORLG00000013893	cpsf6	57	61.268	ENSCPOG00000009980	CPSF7	71	57.558	Cavia_porcellus
ENSORLG00000013893	cpsf6	94	80.762	ENSCPOG00000015201	CPSF6	94	80.571	Cavia_porcellus
ENSORLG00000013893	cpsf6	94	73.481	ENSCCAG00000028149	CPSF6	94	82.857	Cebus_capucinus
ENSORLG00000013893	cpsf6	65	54.167	ENSCCAG00000032367	CPSF7	71	54.545	Cebus_capucinus
ENSORLG00000013893	cpsf6	94	73.481	ENSCATG00000039288	CPSF6	94	82.857	Cercocebus_atys
ENSORLG00000013893	cpsf6	68	54.167	ENSCATG00000042801	CPSF7	77	54.545	Cercocebus_atys
ENSORLG00000013893	cpsf6	57	61.268	ENSCLAG00000003174	CPSF7	71	56.977	Chinchilla_lanigera
ENSORLG00000013893	cpsf6	91	72.467	ENSCLAG00000010149	CPSF6	94	82.178	Chinchilla_lanigera
ENSORLG00000013893	cpsf6	68	54.167	ENSCSAG00000006414	CPSF7	77	54.545	Chlorocebus_sabaeus
ENSORLG00000013893	cpsf6	94	81.369	ENSCPBG00000013322	CPSF6	94	83.460	Chrysemys_picta_bellii
ENSORLG00000013893	cpsf6	91	72.275	ENSCANG00000037294	CPSF6	94	82.376	Colobus_angolensis_palliatus
ENSORLG00000013893	cpsf6	93	70.686	ENSCGRG00001018082	Cpsf6	94	80.422	Cricetulus_griseus_chok1gshd
ENSORLG00000013893	cpsf6	65	55.208	ENSCGRG00001020382	Cpsf7	71	58.140	Cricetulus_griseus_chok1gshd
ENSORLG00000013893	cpsf6	93	70.686	ENSCGRG00000016909	Cpsf6	94	82.016	Cricetulus_griseus_crigri
ENSORLG00000013893	cpsf6	68	55.208	ENSCGRG00000017954	Cpsf7	77	58.140	Cricetulus_griseus_crigri
ENSORLG00000013893	cpsf6	62	35.500	ENSCSEG00000001956	CPSF7	69	39.594	Cynoglossus_semilaevis
ENSORLG00000013893	cpsf6	94	84.512	ENSCSEG00000008967	cpsf6	52	90.244	Cynoglossus_semilaevis
ENSORLG00000013893	cpsf6	69	34.842	ENSCVAG00000007392	CPSF7	81	38.624	Cyprinodon_variegatus
ENSORLG00000013893	cpsf6	65	54.688	ENSDNOG00000018517	CPSF7	79	60.544	Dasypus_novemcinctus
ENSORLG00000013893	cpsf6	91	71.947	ENSDORG00000002950	Cpsf6	92	82.016	Dipodomys_ordii
ENSORLG00000013893	cpsf6	65	51.020	ENSETEG00000003765	CPSF7	67	49.162	Echinops_telfairi
ENSORLG00000013893	cpsf6	65	54.688	ENSEASG00005008196	CPSF7	71	55.114	Equus_asinus_asinus
ENSORLG00000013893	cpsf6	94	73.481	ENSEASG00005008066	CPSF6	94	82.857	Equus_asinus_asinus
ENSORLG00000013893	cpsf6	94	73.481	ENSECAG00000015988	CPSF6	94	82.857	Equus_caballus
ENSORLG00000013893	cpsf6	94	80.952	ENSFCAG00000002855	CPSF6	94	82.857	Felis_catus
ENSORLG00000013893	cpsf6	65	54.688	ENSFCAG00000013677	CPSF7	87	60.544	Felis_catus
ENSORLG00000013893	cpsf6	64	52.128	ENSFALG00000011927	CPSF7	76	54.070	Ficedula_albicollis
ENSORLG00000013893	cpsf6	91	77.950	ENSFALG00000010157	CPSF6	94	82.446	Ficedula_albicollis
ENSORLG00000013893	cpsf6	94	78.203	ENSFDAG00000002281	CPSF6	94	78.011	Fukomys_damarensis
ENSORLG00000013893	cpsf6	65	55.208	ENSFDAG00000003919	CPSF7	71	56.250	Fukomys_damarensis
ENSORLG00000013893	cpsf6	53	95.833	ENSGMOG00000012951	cpsf6	53	96.667	Gadus_morhua
ENSORLG00000013893	cpsf6	65	53.646	ENSGALG00000040962	CPSF7	63	56.395	Gallus_gallus
ENSORLG00000013893	cpsf6	94	81.369	ENSGAGG00000010228	CPSF6	94	83.460	Gopherus_agassizii
ENSORLG00000013893	cpsf6	68	55.208	ENSHGLG00000019090	-	77	57.558	Heterocephalus_glaber_female
ENSORLG00000013893	cpsf6	94	80.762	ENSHGLG00000000792	CPSF6	94	80.571	Heterocephalus_glaber_female
ENSORLG00000013893	cpsf6	68	55.208	ENSHGLG00100013933	-	78	57.558	Heterocephalus_glaber_male
ENSORLG00000013893	cpsf6	94	70.664	ENSHGLG00100013861	CPSF6	94	82.178	Heterocephalus_glaber_male
ENSORLG00000013893	cpsf6	52	82.007	ENSHCOG00000014555	cpsf6	51	82.007	Hippocampus_comes
ENSORLG00000013893	cpsf6	91	72.275	ENSSTOG00000014133	CPSF6	94	82.376	Ictidomys_tridecemlineatus
ENSORLG00000013893	cpsf6	65	54.688	ENSSTOG00000007708	CPSF7	71	57.558	Ictidomys_tridecemlineatus
ENSORLG00000013893	cpsf6	91	71.429	ENSJJAG00000014647	Cpsf6	94	81.854	Jaculus_jaculus
ENSORLG00000013893	cpsf6	68	54.688	ENSJJAG00000019390	Cpsf7	77	55.682	Jaculus_jaculus
ENSORLG00000013893	cpsf6	56	40.559	ENSLBEG00000000947	CPSF7	73	40.571	Labrus_bergylta
ENSORLG00000013893	cpsf6	75	44.937	ENSLACG00000005542	CPSF7	70	44.937	Latimeria_chalumnae
ENSORLG00000013893	cpsf6	67	88.945	ENSLOCG00000016190	cpsf6	67	90.058	Lepisosteus_oculatus
ENSORLG00000013893	cpsf6	65	55.208	ENSLAFG00000032084	CPSF7	71	58.140	Loxodonta_africana
ENSORLG00000013893	cpsf6	94	73.481	ENSLAFG00000030413	CPSF6	94	82.857	Loxodonta_africana
ENSORLG00000013893	cpsf6	65	54.167	ENSMFAG00000001401	CPSF7	71	54.545	Macaca_fascicularis
ENSORLG00000013893	cpsf6	94	73.481	ENSMFAG00000045318	CPSF6	94	82.857	Macaca_fascicularis
ENSORLG00000013893	cpsf6	68	54.167	ENSMMUG00000015280	CPSF7	77	54.545	Macaca_mulatta
ENSORLG00000013893	cpsf6	94	73.481	ENSMNEG00000036311	CPSF6	94	82.857	Macaca_nemestrina
ENSORLG00000013893	cpsf6	68	54.167	ENSMNEG00000029585	CPSF7	77	54.545	Macaca_nemestrina
ENSORLG00000013893	cpsf6	91	72.275	ENSMLEG00000003957	CPSF6	94	82.376	Mandrillus_leucophaeus
ENSORLG00000013893	cpsf6	65	54.167	ENSMLEG00000031269	CPSF7	70	54.545	Mandrillus_leucophaeus
ENSORLG00000013893	cpsf6	65	54.688	ENSMAUG00000013020	Cpsf7	71	57.558	Mesocricetus_auratus
ENSORLG00000013893	cpsf6	94	73.481	ENSMAUG00000013240	Cpsf6	94	82.857	Mesocricetus_auratus
ENSORLG00000013893	cpsf6	65	54.688	ENSMICG00000013788	CPSF7	71	55.114	Microcebus_murinus
ENSORLG00000013893	cpsf6	65	54.688	ENSMOCG00000000072	Cpsf7	71	57.558	Microtus_ochrogaster
ENSORLG00000013893	cpsf6	94	73.665	ENSMODG00000007123	CPSF6	94	83.048	Monodelphis_domestica
ENSORLG00000013893	cpsf6	65	52.041	ENSMODG00000020364	CPSF7	72	56.250	Monodelphis_domestica
ENSORLG00000013893	cpsf6	74	95.312	ENSMALG00000014908	cpsf6	76	96.341	Monopterus_albus
ENSORLG00000013893	cpsf6	65	54.688	MGP_CAROLIEiJ_G0022690	Cpsf7	71	57.558	Mus_caroli
ENSORLG00000013893	cpsf6	94	73.481	MGP_CAROLIEiJ_G0015834	Cpsf6	94	82.857	Mus_caroli
ENSORLG00000013893	cpsf6	65	54.688	ENSMUSG00000034820	Cpsf7	71	57.558	Mus_musculus
ENSORLG00000013893	cpsf6	94	75.368	ENSMUSG00000055531	Cpsf6	94	80.762	Mus_musculus
ENSORLG00000013893	cpsf6	65	54.688	MGP_PahariEiJ_G0014184	Cpsf7	71	57.558	Mus_pahari
ENSORLG00000013893	cpsf6	65	54.688	MGP_SPRETEiJ_G0023604	Cpsf7	71	57.558	Mus_spretus
ENSORLG00000013893	cpsf6	94	75.368	MGP_SPRETEiJ_G0016657	Cpsf6	94	80.762	Mus_spretus
ENSORLG00000013893	cpsf6	63	53.646	ENSMPUG00000014163	CPSF7	68	53.977	Mustela_putorius_furo
ENSORLG00000013893	cpsf6	68	54.688	ENSMLUG00000013278	CPSF7	77	55.114	Myotis_lucifugus
ENSORLG00000013893	cpsf6	69	79.070	ENSMLUG00000023960	-	79	71.978	Myotis_lucifugus
ENSORLG00000013893	cpsf6	68	88.406	ENSMLUG00000028728	-	91	78.947	Myotis_lucifugus
ENSORLG00000013893	cpsf6	65	54.688	ENSNGAG00000005031	Cpsf7	71	57.558	Nannospalax_galili
ENSORLG00000013893	cpsf6	94	73.481	ENSNLEG00000003798	CPSF6	94	82.857	Nomascus_leucogenys
ENSORLG00000013893	cpsf6	65	54.167	ENSNLEG00000002529	CPSF7	65	54.545	Nomascus_leucogenys
ENSORLG00000013893	cpsf6	65	54.688	ENSMEUG00000002261	CPSF7	71	55.114	Notamacropus_eugenii
ENSORLG00000013893	cpsf6	65	52.308	ENSODEG00000002610	CPSF7	71	57.143	Octodon_degus
ENSORLG00000013893	cpsf6	100	100.000	ENSORLG00020016593	cpsf6	100	100.000	Oryzias_latipes_hni
ENSORLG00000013893	cpsf6	69	35.498	ENSORLG00020012657	CPSF7	72	40.341	Oryzias_latipes_hni
ENSORLG00000013893	cpsf6	100	100.000	ENSORLG00015015558	cpsf6	100	100.000	Oryzias_latipes_hsok
ENSORLG00000013893	cpsf6	69	35.498	ENSORLG00015011091	CPSF7	57	39.130	Oryzias_latipes_hsok
ENSORLG00000013893	cpsf6	68	36.797	ENSOMEG00000000539	CPSF7	72	39.884	Oryzias_melastigma
ENSORLG00000013893	cpsf6	100	96.931	ENSOMEG00000009425	cpsf6	100	96.931	Oryzias_melastigma
ENSORLG00000013893	cpsf6	65	54.688	ENSOGAG00000027958	CPSF7	66	55.114	Otolemur_garnettii
ENSORLG00000013893	cpsf6	95	40.942	ENSOARG00000012937	CPSF7	64	56.977	Ovis_aries
ENSORLG00000013893	cpsf6	65	54.167	ENSPPAG00000028232	CPSF7	69	54.545	Pan_paniscus
ENSORLG00000013893	cpsf6	94	80.952	ENSPPRG00000021620	CPSF6	94	82.857	Panthera_pardus
ENSORLG00000013893	cpsf6	65	54.688	ENSPPRG00000008538	CPSF7	71	55.114	Panthera_pardus
ENSORLG00000013893	cpsf6	85	79.915	ENSPTIG00000004079	CPSF6	94	82.030	Panthera_tigris_altaica
ENSORLG00000013893	cpsf6	65	54.688	ENSPTIG00000021699	CPSF7	71	55.114	Panthera_tigris_altaica
ENSORLG00000013893	cpsf6	65	54.167	ENSPTRG00000003742	CPSF7	71	54.545	Pan_troglodytes
ENSORLG00000013893	cpsf6	65	54.167	ENSPANG00000006037	CPSF7	70	54.545	Papio_anubis
ENSORLG00000013893	cpsf6	94	73.481	ENSPANG00000011641	CPSF6	94	82.857	Papio_anubis
ENSORLG00000013893	cpsf6	95	82.634	ENSPKIG00000003081	-	94	84.895	Paramormyrops_kingsleyae
ENSORLG00000013893	cpsf6	60	46.328	ENSPKIG00000018054	CPSF7	70	45.625	Paramormyrops_kingsleyae
ENSORLG00000013893	cpsf6	68	54.688	ENSPEMG00000012648	Cpsf7	77	57.558	Peromyscus_maniculatus_bairdii
ENSORLG00000013893	cpsf6	50	41.806	ENSPMAG00000008077	-	68	49.215	Petromyzon_marinus
ENSORLG00000013893	cpsf6	94	73.665	ENSPCIG00000019063	CPSF6	94	83.048	Phascolarctos_cinereus
ENSORLG00000013893	cpsf6	65	52.041	ENSPCIG00000002551	CPSF7	84	53.631	Phascolarctos_cinereus
ENSORLG00000013893	cpsf6	65	54.167	ENSPPYG00000003188	CPSF7	71	54.545	Pongo_abelii
ENSORLG00000013893	cpsf6	94	80.952	ENSPPYG00000004756	CPSF6	94	82.857	Pongo_abelii
ENSORLG00000013893	cpsf6	65	54.688	ENSPCOG00000011976	CPSF7	71	55.114	Propithecus_coquereli
ENSORLG00000013893	cpsf6	65	54.688	ENSPVAG00000010675	CPSF7	71	55.114	Pteropus_vampyrus
ENSORLG00000013893	cpsf6	54	46.405	ENSPNAG00000015073	CPSF7	67	44.512	Pygocentrus_nattereri
ENSORLG00000013893	cpsf6	94	75.551	ENSRNOG00000005927	Cpsf6	94	80.952	Rattus_norvegicus
ENSORLG00000013893	cpsf6	68	54.688	ENSRNOG00000020668	Cpsf7	77	57.558	Rattus_norvegicus
ENSORLG00000013893	cpsf6	68	54.167	ENSRBIG00000031429	CPSF7	87	59.864	Rhinopithecus_bieti
ENSORLG00000013893	cpsf6	94	73.481	ENSRROG00000042758	CPSF6	94	82.857	Rhinopithecus_roxellana
ENSORLG00000013893	cpsf6	65	54.167	ENSRROG00000045009	CPSF7	71	54.545	Rhinopithecus_roxellana
ENSORLG00000013893	cpsf6	78	82.759	ENSSBOG00000010652	CPSF6	94	82.030	Saimiri_boliviensis_boliviensis
ENSORLG00000013893	cpsf6	65	54.167	ENSSBOG00000018431	CPSF7	71	54.545	Saimiri_boliviensis_boliviensis
ENSORLG00000013893	cpsf6	62	54.688	ENSSHAG00000011964	CPSF7	68	57.558	Sarcophilus_harrisii
ENSORLG00000013893	cpsf6	62	42.778	ENSSFOG00015010288	cpsf7	74	44.444	Scleropages_formosus
ENSORLG00000013893	cpsf6	95	85.086	ENSSFOG00015001688	CPSF6	82	85.824	Scleropages_formosus
ENSORLG00000013893	cpsf6	95	82.095	ENSSFOG00015015803	CPSF6	94	78.585	Scleropages_formosus
ENSORLG00000013893	cpsf6	83	85.098	ENSSARG00000006743	CPSF6	71	90.452	Sorex_araneus
ENSORLG00000013893	cpsf6	65	53.846	ENSSPUG00000019344	CPSF7	73	57.558	Sphenodon_punctatus
ENSORLG00000013893	cpsf6	65	54.688	ENSSSCG00000013083	CPSF7	75	64.122	Sus_scrofa
ENSORLG00000013893	cpsf6	94	73.481	ENSSSCG00000038031	CPSF6	94	82.857	Sus_scrofa
ENSORLG00000013893	cpsf6	62	49.718	ENSTGUG00000006513	CPSF7	71	53.801	Taeniopygia_guttata
ENSORLG00000013893	cpsf6	61	54.167	ENSTTRG00000011085	CPSF7	70	55.114	Tursiops_truncatus
ENSORLG00000013893	cpsf6	85	71.283	ENSUAMG00000023492	CPSF6	94	82.030	Ursus_americanus
ENSORLG00000013893	cpsf6	65	54.688	ENSUAMG00000017809	CPSF7	71	55.114	Ursus_americanus
ENSORLG00000013893	cpsf6	85	71.283	ENSUMAG00000020779	CPSF6	94	82.030	Ursus_maritimus
ENSORLG00000013893	cpsf6	68	54.688	ENSUMAG00000011825	CPSF7	77	55.114	Ursus_maritimus
ENSORLG00000013893	cpsf6	65	54.688	ENSVVUG00000004939	CPSF7	79	60.544	Vulpes_vulpes
ENSORLG00000013893	cpsf6	97	42.144	ENSXETG00000006715	cpsf7	54	48.023	Xenopus_tropicalis