EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000014099 (Gene tree)
Gene ID: -
Gene Symbol: si:dkey-34d22.5
Alias: -
Full Name: RAB42%2C member RAS oncogene family
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 1377 bases
Position: chr16:22547746-22549122
Accession: 101168571
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000017678	MMR_HSR1	PF01926.23	5.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000017679	-	654	XM_004078281	ENSORLP00000017678	217 (aa)	XP_004078329	H2MGE2

Gene Model

Click here to download ENSORLG00000014099's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000014099's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000014099	si:dkey-34d22.5	98	31.818	ENSORLG00000013938	rab11bb	96	31.818
ENSORLG00000014099	si:dkey-34d22.5	98	33.645	ENSORLG00000016126	rab11al	96	33.645
ENSORLG00000014099	si:dkey-34d22.5	98	31.818	ENSORLG00000015307	rab11ba	96	31.818
ENSORLG00000014099	si:dkey-34d22.5	76	43.976	ENSORLG00000024116	RAB15	79	43.976
ENSORLG00000014099	si:dkey-34d22.5	80	36.364	ENSORLG00000016135	rab25b	86	37.059
ENSORLG00000014099	si:dkey-34d22.5	71	35.256	ENSORLG00000001566	rhebl1	84	35.256
ENSORLG00000014099	si:dkey-34d22.5	74	42.169	ENSORLG00000006628	-	79	42.169
ENSORLG00000014099	si:dkey-34d22.5	67	39.189	ENSORLG00000030109	rab33ba	63	39.189
ENSORLG00000014099	si:dkey-34d22.5	96	36.667	ENSORLG00000016290	rab6bb	94	36.667
ENSORLG00000014099	si:dkey-34d22.5	90	39.713	ENSORLG00000000937	-	94	39.713
ENSORLG00000014099	si:dkey-34d22.5	88	32.843	ENSORLG00000026940	rasl11a	78	32.843
ENSORLG00000014099	si:dkey-34d22.5	76	41.916	ENSORLG00000028104	rab1ab	82	41.916
ENSORLG00000014099	si:dkey-34d22.5	71	32.258	ENSORLG00000003681	rheb	83	32.258
ENSORLG00000014099	si:dkey-34d22.5	97	38.967	ENSORLG00000013432	rab2a	99	38.967
ENSORLG00000014099	si:dkey-34d22.5	81	40.884	ENSORLG00000021846	-	89	40.884
ENSORLG00000014099	si:dkey-34d22.5	86	55.851	ENSORLG00000001850	RAB39B	88	55.851
ENSORLG00000014099	si:dkey-34d22.5	77	37.278	ENSORLG00000015284	-	55	37.278
ENSORLG00000014099	si:dkey-34d22.5	70	31.169	ENSORLG00000018119	si:ch73-116o1.2	78	31.325
ENSORLG00000014099	si:dkey-34d22.5	81	38.798	ENSORLG00000030566	rab33a	66	38.798
ENSORLG00000014099	si:dkey-34d22.5	75	43.902	ENSORLG00000004624	rab18a	80	43.902
ENSORLG00000014099	si:dkey-34d22.5	67	41.892	ENSORLG00000030642	zgc:101559	63	41.892
ENSORLG00000014099	si:dkey-34d22.5	97	41.860	ENSORLG00000029921	-	97	41.860
ENSORLG00000014099	si:dkey-34d22.5	74	33.125	ENSORLG00000009874	rabl2	69	33.125
ENSORLG00000014099	si:dkey-34d22.5	74	46.626	ENSORLG00000010846	rab15	76	46.626
ENSORLG00000014099	si:dkey-34d22.5	78	35.632	ENSORLG00000004394	rab34a	77	32.701
ENSORLG00000014099	si:dkey-34d22.5	97	36.744	ENSORLG00000000602	zgc:171927	98	36.744
ENSORLG00000014099	si:dkey-34d22.5	65	34.028	ENSORLG00000025519	rras	79	33.121
ENSORLG00000014099	si:dkey-34d22.5	98	33.178	ENSORLG00000018331	RAB11A	96	33.178
ENSORLG00000014099	si:dkey-34d22.5	75	36.585	ENSORLG00000012261	rab5aa	75	36.585
ENSORLG00000014099	si:dkey-34d22.5	75	37.195	ENSORLG00000003882	rab5c	87	35.859
ENSORLG00000014099	si:dkey-34d22.5	78	33.333	ENSORLG00000003119	rab34b	63	33.333
ENSORLG00000014099	si:dkey-34d22.5	71	32.258	ENSORLG00000025819	-	83	32.258
ENSORLG00000014099	si:dkey-34d22.5	98	32.243	ENSORLG00000012158	rab25a	96	32.243
ENSORLG00000014099	si:dkey-34d22.5	75	43.902	ENSORLG00000009609	rab18b	80	43.902
ENSORLG00000014099	si:dkey-34d22.5	74	41.718	ENSORLG00000016555	rab3db	77	41.718
ENSORLG00000014099	si:dkey-34d22.5	85	55.080	ENSORLG00000008345	-	88	55.080
ENSORLG00000014099	si:dkey-34d22.5	75	35.714	ENSORLG00000001351	-	81	35.714
ENSORLG00000014099	si:dkey-34d22.5	77	38.824	ENSORLG00000001098	si:dkey-16l2.16	80	38.824
ENSORLG00000014099	si:dkey-34d22.5	76	42.515	ENSORLG00000024558	-	68	44.099
ENSORLG00000014099	si:dkey-34d22.5	72	31.481	ENSORLG00000001134	dnajc27	59	31.481
ENSORLG00000014099	si:dkey-34d22.5	71	32.903	ENSORLG00000018912	hrasb	88	32.143
ENSORLG00000014099	si:dkey-34d22.5	77	42.012	ENSORLG00000025395	-	84	42.012
ENSORLG00000014099	si:dkey-34d22.5	71	40.645	ENSORLG00000010115	rab23	74	40.260
ENSORLG00000014099	si:dkey-34d22.5	76	42.262	ENSORLG00000027669	RAB41	77	42.262
ENSORLG00000014099	si:dkey-34d22.5	97	57.277	ENSORLG00000022335	rab42a	98	57.277
ENSORLG00000014099	si:dkey-34d22.5	76	41.071	ENSORLG00000026197	rab6a	78	41.071
ENSORLG00000014099	si:dkey-34d22.5	88	43.299	ENSORLG00000007406	rab14	89	43.299
ENSORLG00000014099	si:dkey-34d22.5	67	41.830	ENSORLG00000002071	-	69	40.120
ENSORLG00000014099	si:dkey-34d22.5	80	37.838	ENSORLG00000006405	rab9b	88	37.838
ENSORLG00000014099	si:dkey-34d22.5	74	42.771	ENSORLG00000017806	rab9a	82	42.771
ENSORLG00000014099	si:dkey-34d22.5	97	38.967	ENSORLG00000028885	rab35b	98	38.967
ENSORLG00000014099	si:dkey-34d22.5	79	36.158	ENSORLG00000029090	-	84	36.158
ENSORLG00000014099	si:dkey-34d22.5	71	32.692	ENSORLG00000024102	kras	88	31.953
ENSORLG00000014099	si:dkey-34d22.5	85	36.126	ENSORLG00000025098	si:dkey-13a21.4	92	36.126
ENSORLG00000014099	si:dkey-34d22.5	82	34.973	ENSORLG00000027892	RAB29	90	34.973
ENSORLG00000014099	si:dkey-34d22.5	69	33.333	ENSORLG00000024443	zgc:55558	87	32.515
ENSORLG00000014099	si:dkey-34d22.5	72	40.881	ENSORLG00000003902	rab12	83	34.906
ENSORLG00000014099	si:dkey-34d22.5	75	42.424	ENSORLG00000029812	rab30	80	42.424

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000014099	si:dkey-34d22.5	99	84.163	ENSACIG00000016958	si:dkey-34d22.5	99	84.163	Amphilophus_citrinellus
ENSORLG00000014099	si:dkey-34d22.5	99	87.783	ENSATEG00000010784	si:dkey-34d22.5	86	87.783	Anabas_testudineus
ENSORLG00000014099	si:dkey-34d22.5	99	60.092	ENSCPBG00000011236	-	99	60.092	Chrysemys_picta_bellii
ENSORLG00000014099	si:dkey-34d22.5	99	80.090	ENSCSEG00000019183	si:dkey-34d22.5	99	80.090	Cynoglossus_semilaevis
ENSORLG00000014099	si:dkey-34d22.5	99	83.710	ENSCVAG00000017064	si:dkey-34d22.5	99	83.710	Cyprinodon_variegatus
ENSORLG00000014099	si:dkey-34d22.5	83	52.198	ENSDARG00000100379	si:dkey-34d22.2	99	52.198	Danio_rerio
ENSORLG00000014099	si:dkey-34d22.5	97	59.906	ENSFALG00000001373	-	97	59.906	Ficedula_albicollis
ENSORLG00000014099	si:dkey-34d22.5	99	85.135	ENSFHEG00000012041	si:dkey-34d22.5	99	85.135	Fundulus_heteroclitus
ENSORLG00000014099	si:dkey-34d22.5	87	63.158	ENSGALG00000000994	-	90	63.158	Gallus_gallus
ENSORLG00000014099	si:dkey-34d22.5	99	85.520	ENSGAFG00000008183	si:dkey-34d22.5	99	85.520	Gambusia_affinis
ENSORLG00000014099	si:dkey-34d22.5	94	59.024	ENSGAGG00000004918	-	99	59.024	Gopherus_agassizii
ENSORLG00000014099	si:dkey-34d22.5	100	73.756	ENSHCOG00000015692	si:dkey-34d22.5	100	73.756	Hippocampus_comes
ENSORLG00000014099	si:dkey-34d22.5	99	87.330	ENSKMAG00000012778	si:dkey-34d22.5	99	87.330	Kryptolebias_marmoratus
ENSORLG00000014099	si:dkey-34d22.5	99	82.805	ENSLBEG00000002926	si:dkey-34d22.5	100	82.805	Labrus_bergylta
ENSORLG00000014099	si:dkey-34d22.5	98	59.535	ENSLACG00000012674	si:dkey-34d22.5	99	59.535	Latimeria_chalumnae
ENSORLG00000014099	si:dkey-34d22.5	98	68.837	ENSLOCG00000003467	si:dkey-34d22.5	98	71.628	Lepisosteus_oculatus
ENSORLG00000014099	si:dkey-34d22.5	99	84.091	ENSMMOG00000006846	si:dkey-34d22.5	99	84.091	Mola_mola
ENSORLG00000014099	si:dkey-34d22.5	99	82.353	ENSMALG00000013152	si:dkey-34d22.5	99	82.353	Monopterus_albus
ENSORLG00000014099	si:dkey-34d22.5	100	99.539	ENSORLG00020020277	si:dkey-34d22.5	100	99.539	Oryzias_latipes_hni
ENSORLG00000014099	si:dkey-34d22.5	100	99.539	ENSORLG00015000142	si:dkey-34d22.5	100	99.539	Oryzias_latipes_hsok
ENSORLG00000014099	si:dkey-34d22.5	100	94.570	ENSOMEG00000017958	si:dkey-34d22.5	100	94.570	Oryzias_melastigma
ENSORLG00000014099	si:dkey-34d22.5	99	75.799	ENSPKIG00000021209	si:dkey-34d22.5	100	75.799	Paramormyrops_kingsleyae
ENSORLG00000014099	si:dkey-34d22.5	91	63.317	ENSPSIG00000006606	-	99	63.317	Pelodiscus_sinensis
ENSORLG00000014099	si:dkey-34d22.5	99	84.091	ENSPMGG00000001298	-	99	84.091	Periophthalmus_magnuspinnatus
ENSORLG00000014099	si:dkey-34d22.5	93	60.099	ENSPCIG00000022399	-	91	60.099	Phascolarctos_cinereus
ENSORLG00000014099	si:dkey-34d22.5	99	85.973	ENSPFOG00000014499	si:dkey-34d22.5	99	85.973	Poecilia_formosa
ENSORLG00000014099	si:dkey-34d22.5	99	85.973	ENSPLAG00000007773	si:dkey-34d22.5	99	85.973	Poecilia_latipinna
ENSORLG00000014099	si:dkey-34d22.5	99	85.973	ENSPMEG00000012932	si:dkey-34d22.5	99	85.973	Poecilia_mexicana
ENSORLG00000014099	si:dkey-34d22.5	89	60.513	ENSSHAG00000008520	-	88	60.513	Sarcophilus_harrisii
ENSORLG00000014099	si:dkey-34d22.5	99	70.642	ENSSFOG00015012088	rab42	98	70.642	Scleropages_formosus
ENSORLG00000014099	si:dkey-34d22.5	99	90.455	ENSSLDG00000002646	si:dkey-34d22.5	99	90.455	Seriola_lalandi_dorsalis
ENSORLG00000014099	si:dkey-34d22.5	100	90.090	ENSSPAG00000012955	si:dkey-34d22.5	100	90.090	Stegastes_partitus
ENSORLG00000014099	si:dkey-34d22.5	92	49.254	ENSXETG00000020622	rab39a	98	49.254	Xenopus_tropicalis
ENSORLG00000014099	si:dkey-34d22.5	99	84.615	ENSXCOG00000008410	si:dkey-34d22.5	99	84.615	Xiphophorus_couchianus
ENSORLG00000014099	si:dkey-34d22.5	99	84.615	ENSXMAG00000029317	si:dkey-34d22.5	99	84.615	Xiphophorus_maculatus