EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000014655 (Gene tree)
Gene ID: 101157817
Gene Symbol: bms1
Alias: -
Full Name: BMS1%2C ribosome biogenesis factor
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 12650 bases
Position: chr19:23404687-23417336
Accession: 101157817
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000018371	AARP2CN	PF08142.12	7.9e-32	1	1
ENSORLP00000028972	AARP2CN	PF08142.12	1.2e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000018372	-	4284	XM_023949500	ENSORLP00000018371	1189 (aa)	XP_023805268	H2MI97
ENSORLT00000044787	-	4435	-	ENSORLP00000028972	1247 (aa)	-	-

Gene Model

Click here to download ENSORLG00000014655's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000014655's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000014655	bms1	98	68.164	ENSG00000165733	BMS1	87	68.775	Homo_sapiens
ENSORLG00000014655	bms1	87	80.435	ENSAPOG00000002296	bms1	99	80.529	Acanthochromis_polyacanthus
ENSORLG00000014655	bms1	98	69.066	ENSAMEG00000016834	BMS1	88	68.811	Ailuropoda_melanoleuca
ENSORLG00000014655	bms1	99	77.471	ENSACIG00000002588	bms1	99	76.993	Amphilophus_citrinellus
ENSORLG00000014655	bms1	99	80.621	ENSAOCG00000018088	bms1	99	80.592	Amphiprion_ocellaris
ENSORLG00000014655	bms1	100	80.687	ENSAPEG00000014673	bms1	100	80.905	Amphiprion_percula
ENSORLG00000014655	bms1	99	80.000	ENSATEG00000023465	bms1	99	81.039	Anabas_testudineus
ENSORLG00000014655	bms1	90	70.848	ENSAPLG00000003759	BMS1	87	71.150	Anas_platyrhynchos
ENSORLG00000014655	bms1	99	64.552	ENSACAG00000004537	-	82	72.222	Anolis_carolinensis
ENSORLG00000014655	bms1	95	68.438	ENSANAG00000023432	BMS1	87	68.669	Aotus_nancymaae
ENSORLG00000014655	bms1	99	79.233	ENSACLG00000001294	bms1	99	79.083	Astatotilapia_calliptera
ENSORLG00000014655	bms1	52	76.206	ENSAMXG00000011236	bms1	91	76.367	Astyanax_mexicanus
ENSORLG00000014655	bms1	98	67.954	ENSBTAG00000012878	BMS1	87	69.692	Bos_taurus
ENSORLG00000014655	bms1	85	53.807	WBGene00022021	Y61A9LA.10	93	54.061	Caenorhabditis_elegans
ENSORLG00000014655	bms1	98	66.717	ENSCJAG00000021705	BMS1	87	69.318	Callithrix_jacchus
ENSORLG00000014655	bms1	98	68.147	ENSCAFG00000007114	BMS1	87	68.548	Canis_familiaris
ENSORLG00000014655	bms1	98	68.147	ENSCAFG00020025282	BMS1	87	68.548	Canis_lupus_dingo
ENSORLG00000014655	bms1	98	68.147	ENSCHIG00000023251	BMS1	82	73.708	Capra_hircus
ENSORLG00000014655	bms1	98	66.284	ENSCAPG00000008652	BMS1	82	72.009	Cavia_aperea
ENSORLG00000014655	bms1	98	67.625	ENSCPOG00000000502	BMS1	82	73.589	Cavia_porcellus
ENSORLG00000014655	bms1	96	57.662	ENSCCAG00000024969	-	87	58.469	Cebus_capucinus
ENSORLG00000014655	bms1	79	53.309	ENSCATG00000008695	-	70	58.482	Cercocebus_atys
ENSORLG00000014655	bms1	98	67.446	ENSCATG00000030625	-	85	71.285	Cercocebus_atys
ENSORLG00000014655	bms1	95	69.261	ENSCLAG00000002446	BMS1	87	67.906	Chinchilla_lanigera
ENSORLG00000014655	bms1	98	67.573	ENSCSAG00000011118	BMS1	87	69.206	Chlorocebus_sabaeus
ENSORLG00000014655	bms1	99	65.158	ENSCHOG00000011055	BMS1	87	68.344	Choloepus_hoffmanni
ENSORLG00000014655	bms1	96	68.770	ENSCPBG00000025581	BMS1	86	68.932	Chrysemys_picta_bellii
ENSORLG00000014655	bms1	90	62.189	ENSCING00000003181	-	99	58.945	Ciona_intestinalis
ENSORLG00000014655	bms1	73	54.118	ENSCSAVG00000004113	-	88	54.023	Ciona_savignyi
ENSORLG00000014655	bms1	98	68.616	ENSCANG00000011609	BMS1	87	69.530	Colobus_angolensis_palliatus
ENSORLG00000014655	bms1	98	62.411	ENSCGRG00001019461	Bms1	88	67.057	Cricetulus_griseus_chok1gshd
ENSORLG00000014655	bms1	98	62.411	ENSCGRG00000009016	Bms1	88	67.057	Cricetulus_griseus_crigri
ENSORLG00000014655	bms1	99	76.245	ENSCSEG00000002469	bms1	50	80.480	Cynoglossus_semilaevis
ENSORLG00000014655	bms1	99	80.743	ENSCVAG00000008371	bms1	99	80.400	Cyprinodon_variegatus
ENSORLG00000014655	bms1	100	72.808	ENSDARG00000054154	bms1	93	76.825	Danio_rerio
ENSORLG00000014655	bms1	99	69.171	ENSDNOG00000015761	BMS1	87	68.340	Dasypus_novemcinctus
ENSORLG00000014655	bms1	95	67.899	ENSDORG00000002982	Bms1	83	73.483	Dipodomys_ordii
ENSORLG00000014655	bms1	81	64.835	FBgn0036686	CG7728	95	55.603	Drosophila_melanogaster
ENSORLG00000014655	bms1	84	66.964	ENSETEG00000009554	BMS1	77	66.964	Echinops_telfairi
ENSORLG00000014655	bms1	98	65.414	ENSEASG00005006894	BMS1	88	68.438	Equus_asinus_asinus
ENSORLG00000014655	bms1	97	69.066	ENSECAG00000001358	BMS1	88	68.277	Equus_caballus
ENSORLG00000014655	bms1	99	73.115	ENSELUG00000001756	bms1	74	88.022	Esox_lucius
ENSORLG00000014655	bms1	99	61.838	ENSFCAG00000011220	BMS1	87	68.720	Felis_catus
ENSORLG00000014655	bms1	96	67.955	ENSFALG00000006882	BMS1	86	68.921	Ficedula_albicollis
ENSORLG00000014655	bms1	99	61.280	ENSFDAG00000001422	BMS1	90	67.370	Fukomys_damarensis
ENSORLG00000014655	bms1	99	80.968	ENSFHEG00000003367	bms1	99	81.104	Fundulus_heteroclitus
ENSORLG00000014655	bms1	99	71.429	ENSGMOG00000000718	bms1	99	71.035	Gadus_morhua
ENSORLG00000014655	bms1	99	68.669	ENSGALG00000002624	BMS1	87	68.669	Gallus_gallus
ENSORLG00000014655	bms1	97	82.229	ENSGACG00000015334	bms1	89	82.229	Gasterosteus_aculeatus
ENSORLG00000014655	bms1	97	68.447	ENSGAGG00000003467	BMS1	89	68.167	Gopherus_agassizii
ENSORLG00000014655	bms1	99	79.483	ENSHBUG00000022628	bms1	99	79.351	Haplochromis_burtoni
ENSORLG00000014655	bms1	99	61.581	ENSHGLG00000000477	BMS1	88	67.695	Heterocephalus_glaber_female
ENSORLG00000014655	bms1	99	61.660	ENSHGLG00100002176	BMS1	88	67.695	Heterocephalus_glaber_male
ENSORLG00000014655	bms1	99	78.505	ENSHCOG00000017604	bms1	99	78.319	Hippocampus_comes
ENSORLG00000014655	bms1	99	70.672	ENSIPUG00000017855	bms1	50	77.760	Ictalurus_punctatus
ENSORLG00000014655	bms1	98	69.006	ENSSTOG00000015063	BMS1	87	68.447	Ictidomys_tridecemlineatus
ENSORLG00000014655	bms1	97	69.141	ENSJJAG00000017328	Bms1	88	69.044	Jaculus_jaculus
ENSORLG00000014655	bms1	65	74.386	ENSKMAG00000021982	bms1	97	73.935	Kryptolebias_marmoratus
ENSORLG00000014655	bms1	99	78.146	ENSLBEG00000028208	bms1	99	78.311	Labrus_bergylta
ENSORLG00000014655	bms1	99	64.498	ENSLACG00000001600	BMS1	89	65.649	Latimeria_chalumnae
ENSORLG00000014655	bms1	54	74.057	ENSLOCG00000012914	bms1	51	76.789	Lepisosteus_oculatus
ENSORLG00000014655	bms1	98	66.540	ENSLAFG00000006250	BMS1	87	67.532	Loxodonta_africana
ENSORLG00000014655	bms1	87	67.510	ENSMFAG00000037771	BMS1	95	68.701	Macaca_fascicularis
ENSORLG00000014655	bms1	88	61.667	ENSMMUG00000007426	-	78	64.271	Macaca_mulatta
ENSORLG00000014655	bms1	83	53.320	ENSMLEG00000029084	-	71	58.065	Mandrillus_leucophaeus
ENSORLG00000014655	bms1	99	78.921	ENSMAMG00000020855	bms1	99	77.925	Mastacembelus_armatus
ENSORLG00000014655	bms1	99	79.149	ENSMZEG00005005663	bms1	99	79.000	Maylandia_zebra
ENSORLG00000014655	bms1	91	68.994	ENSMGAG00000001170	BMS1	86	68.994	Meleagris_gallopavo
ENSORLG00000014655	bms1	98	61.927	ENSMAUG00000002195	Bms1	88	68.277	Mesocricetus_auratus
ENSORLG00000014655	bms1	98	66.161	ENSMICG00000009977	BMS1	87	67.311	Microcebus_murinus
ENSORLG00000014655	bms1	97	67.520	ENSMOCG00000002038	Bms1	87	67.147	Microtus_ochrogaster
ENSORLG00000014655	bms1	99	79.597	ENSMMOG00000000977	bms1	99	79.513	Mola_mola
ENSORLG00000014655	bms1	99	63.914	ENSMODG00000001177	BMS1	81	74.215	Monodelphis_domestica
ENSORLG00000014655	bms1	99	79.004	ENSMALG00000009680	bms1	99	79.170	Monopterus_albus
ENSORLG00000014655	bms1	80	79.574	MGP_CAROLIEiJ_G0028785	-	62	79.915	Mus_caroli
ENSORLG00000014655	bms1	98	61.538	ENSMUSG00000030138	Bms1	88	66.795	Mus_musculus
ENSORLG00000014655	bms1	98	68.167	MGP_PahariEiJ_G0022539	Bms1	88	68.019	Mus_pahari
ENSORLG00000014655	bms1	98	61.460	MGP_SPRETEiJ_G0029816	Bms1	88	66.507	Mus_spretus
ENSORLG00000014655	bms1	99	69.455	ENSMPUG00000017276	BMS1	88	68.750	Mustela_putorius_furo
ENSORLG00000014655	bms1	99	60.955	ENSMLUG00000003260	BMS1	88	68.506	Myotis_lucifugus
ENSORLG00000014655	bms1	99	58.157	ENSNGAG00000015258	Bms1	84	67.891	Nannospalax_galili
ENSORLG00000014655	bms1	98	67.383	ENSNLEG00000015791	BMS1	87	67.261	Nomascus_leucogenys
ENSORLG00000014655	bms1	85	77.805	ENSOPRG00000005195	BMS1	79	77.861	Ochotona_princeps
ENSORLG00000014655	bms1	98	65.913	ENSODEG00000005554	BMS1	83	73.884	Octodon_degus
ENSORLG00000014655	bms1	99	80.167	ENSONIG00000007227	bms1	99	80.017	Oreochromis_niloticus
ENSORLG00000014655	bms1	98	66.409	ENSOANG00000000662	-	82	73.696	Ornithorhynchus_anatinus
ENSORLG00000014655	bms1	95	68.798	ENSOCUG00000005354	BMS1	87	68.760	Oryctolagus_cuniculus
ENSORLG00000014655	bms1	100	91.735	ENSORLG00020016246	bms1	100	91.735	Oryzias_latipes_hni
ENSORLG00000014655	bms1	100	94.166	ENSORLG00015014183	bms1	98	97.727	Oryzias_latipes_hsok
ENSORLG00000014655	bms1	100	89.623	ENSOMEG00000015042	bms1	100	89.623	Oryzias_melastigma
ENSORLG00000014655	bms1	99	60.978	ENSOGAG00000006511	BMS1	87	68.498	Otolemur_garnettii
ENSORLG00000014655	bms1	98	67.625	ENSOARG00000003900	BMS1	82	73.051	Ovis_aries
ENSORLG00000014655	bms1	98	67.969	ENSPPAG00000027837	BMS1	87	68.577	Pan_paniscus
ENSORLG00000014655	bms1	99	60.860	ENSPPRG00000001311	BMS1	87	68.359	Panthera_pardus
ENSORLG00000014655	bms1	99	61.059	ENSPTIG00000009652	BMS1	87	67.899	Panthera_tigris_altaica
ENSORLG00000014655	bms1	98	68.164	ENSPTRG00000002441	BMS1	87	68.775	Pan_troglodytes
ENSORLG00000014655	bms1	97	75.279	ENSPKIG00000008165	bms1	88	76.923	Paramormyrops_kingsleyae
ENSORLG00000014655	bms1	94	67.961	ENSPSIG00000006481	BMS1	86	68.288	Pelodiscus_sinensis
ENSORLG00000014655	bms1	94	67.913	ENSPEMG00000022467	Bms1	87	66.990	Peromyscus_maniculatus_bairdii
ENSORLG00000014655	bms1	96	68.174	ENSPCIG00000001339	BMS1	81	73.543	Phascolarctos_cinereus
ENSORLG00000014655	bms1	96	83.981	ENSPFOG00000015180	bms1	99	78.351	Poecilia_formosa
ENSORLG00000014655	bms1	99	79.915	ENSPMEG00000023176	bms1	94	79.665	Poecilia_mexicana
ENSORLG00000014655	bms1	99	79.153	ENSPREG00000002695	bms1	99	79.201	Poecilia_reticulata
ENSORLG00000014655	bms1	53	67.446	ENSPPYG00000002836	-	72	72.667	Pongo_abelii
ENSORLG00000014655	bms1	77	76.871	ENSPCAG00000014528	BMS1	70	73.576	Procavia_capensis
ENSORLG00000014655	bms1	94	67.532	ENSPCOG00000023834	-	86	68.053	Propithecus_coquereli
ENSORLG00000014655	bms1	99	60.945	ENSPVAG00000000725	BMS1	83	71.429	Pteropus_vampyrus
ENSORLG00000014655	bms1	99	77.741	ENSPNYG00000018866	bms1	99	77.150	Pundamilia_nyererei
ENSORLG00000014655	bms1	52	79.360	ENSPNAG00000000676	bms1	90	79.775	Pygocentrus_nattereri
ENSORLG00000014655	bms1	79	66.797	ENSRNOG00000006576	Bms1	85	70.312	Rattus_norvegicus
ENSORLG00000014655	bms1	98	66.667	ENSRROG00000040101	BMS1	85	71.602	Rhinopithecus_roxellana
ENSORLG00000014655	bms1	76	52.062	YPL217C	-	79	52.062	Saccharomyces_cerevisiae
ENSORLG00000014655	bms1	95	69.243	ENSSBOG00000035778	BMS1	87	69.481	Saimiri_boliviensis_boliviensis
ENSORLG00000014655	bms1	99	64.036	ENSSHAG00000005062	BMS1	81	73.767	Sarcophilus_harrisii
ENSORLG00000014655	bms1	99	78.462	ENSSMAG00000019966	bms1	99	79.028	Scophthalmus_maximus
ENSORLG00000014655	bms1	100	80.212	ENSSDUG00000016875	bms1	100	80.945	Seriola_dumerili
ENSORLG00000014655	bms1	100	80.065	ENSSLDG00000015199	bms1	100	80.794	Seriola_lalandi_dorsalis
ENSORLG00000014655	bms1	53	75.728	ENSSARG00000014407	BMS1	66	75.728	Sorex_araneus
ENSORLG00000014655	bms1	98	68.438	ENSSPUG00000014454	BMS1	87	68.932	Sphenodon_punctatus
ENSORLG00000014655	bms1	99	67.311	ENSSSCG00000010198	BMS1	87	70.016	Sus_scrofa
ENSORLG00000014655	bms1	95	69.404	ENSTGUG00000006302	-	87	69.404	Taeniopygia_guttata
ENSORLG00000014655	bms1	99	73.142	ENSTRUG00000008028	bms1	99	73.019	Takifugu_rubripes
ENSORLG00000014655	bms1	98	76.423	ENSTNIG00000006216	bms1	88	77.199	Tetraodon_nigroviridis
ENSORLG00000014655	bms1	65	67.905	ENSTBEG00000001673	-	64	69.205	Tupaia_belangeri
ENSORLG00000014655	bms1	98	66.058	ENSTTRG00000007983	BMS1	79	77.340	Tursiops_truncatus
ENSORLG00000014655	bms1	99	68.750	ENSUAMG00000023996	BMS1	88	68.328	Ursus_americanus
ENSORLG00000014655	bms1	99	68.750	ENSUMAG00000016523	BMS1	88	68.167	Ursus_maritimus
ENSORLG00000014655	bms1	86	64.130	ENSVPAG00000007477	BMS1	81	72.727	Vicugna_pacos
ENSORLG00000014655	bms1	99	68.147	ENSVVUG00000021305	BMS1	89	68.548	Vulpes_vulpes
ENSORLG00000014655	bms1	98	62.661	ENSXETG00000008158	bms1	96	60.839	Xenopus_tropicalis
ENSORLG00000014655	bms1	99	77.685	ENSXCOG00000000506	bms1	96	89.189	Xiphophorus_couchianus
ENSORLG00000014655	bms1	99	79.694	ENSXMAG00000014236	bms1	99	80.034	Xiphophorus_maculatus