EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000015201 (Gene tree)
Gene ID: 101156932
Gene Symbol: snd1
Alias: -
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 168441 bases
Position: chr23:16313817-16482257
Accession: 101156932
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000040000	TUDOR	PF00567.24	7.9e-26	1	1
ENSORLP00000019044	TUDOR	PF00567.24	8.2e-26	1	1
ENSORLP00000025899	TUDOR	PF00567.24	8.5e-26	1	1
ENSORLP00000019044	SNase	PF00565.17	1e-66	1	4
ENSORLP00000019044	SNase	PF00565.17	1e-66	2	4
ENSORLP00000019044	SNase	PF00565.17	1e-66	3	4
ENSORLP00000019044	SNase	PF00565.17	1e-66	4	4
ENSORLP00000040000	SNase	PF00565.17	7.1e-64	1	4
ENSORLP00000040000	SNase	PF00565.17	7.1e-64	2	4
ENSORLP00000040000	SNase	PF00565.17	7.1e-64	3	4
ENSORLP00000040000	SNase	PF00565.17	7.1e-64	4	4
ENSORLP00000025899	SNase	PF00565.17	8.5e-64	1	4
ENSORLP00000025899	SNase	PF00565.17	8.5e-64	2	4
ENSORLP00000025899	SNase	PF00565.17	8.5e-64	3	4
ENSORLP00000025899	SNase	PF00565.17	8.5e-64	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000019045	-	4408	XM_023952284	ENSORLP00000019044	911 (aa)	XP_023808052	H2MK40
ENSORLT00000045917	-	5528	-	ENSORLP00000040000	895 (aa)	-	-
ENSORLT00000046915	-	4834	-	ENSORLP00000025899	931 (aa)	-	-

Gene Model

Click here to download ENSORLG00000015201's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000015201's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000015201	snd1	98	83.799	ENSG00000197157	SND1	98	83.799	Homo_sapiens
ENSORLG00000015201	snd1	100	94.182	ENSAPOG00000017599	snd1	100	94.182	Acanthochromis_polyacanthus
ENSORLG00000015201	snd1	100	82.713	ENSAMEG00000004664	SND1	93	83.724	Ailuropoda_melanoleuca
ENSORLG00000015201	snd1	100	90.779	ENSACIG00000003551	snd1	100	90.779	Amphilophus_citrinellus
ENSORLG00000015201	snd1	100	93.963	ENSAOCG00000014166	snd1	100	93.963	Amphiprion_ocellaris
ENSORLG00000015201	snd1	100	94.072	ENSAPEG00000007067	snd1	100	94.072	Amphiprion_percula
ENSORLG00000015201	snd1	100	94.190	ENSATEG00000018475	snd1	89	94.494	Anabas_testudineus
ENSORLG00000015201	snd1	98	83.911	ENSANAG00000034463	SND1	99	83.464	Aotus_nancymaae
ENSORLG00000015201	snd1	100	92.755	ENSACLG00000022897	snd1	100	92.755	Astatotilapia_calliptera
ENSORLG00000015201	snd1	99	89.231	ENSAMXG00000016318	snd1	98	89.955	Astyanax_mexicanus
ENSORLG00000015201	snd1	98	84.022	ENSBTAG00000010692	SND1	98	84.022	Bos_taurus
ENSORLG00000015201	snd1	99	46.659	WBGene00006626	tsn-1	97	47.195	Caenorhabditis_elegans
ENSORLG00000015201	snd1	98	83.687	ENSCJAG00000017668	SND1	99	83.747	Callithrix_jacchus
ENSORLG00000015201	snd1	100	83.004	ENSCAFG00000001700	SND1	98	84.022	Canis_familiaris
ENSORLG00000015201	snd1	100	83.004	ENSCAFG00020021639	SND1	98	84.022	Canis_lupus_dingo
ENSORLG00000015201	snd1	99	82.946	ENSCHIG00000023390	SND1	98	83.973	Capra_hircus
ENSORLG00000015201	snd1	71	87.719	ENSTSYG00000004979	SND1	96	87.719	Carlito_syrichta
ENSORLG00000015201	snd1	99	73.060	ENSCAPG00000010677	SND1	97	73.649	Cavia_aperea
ENSORLG00000015201	snd1	98	83.687	ENSCPOG00000006251	SND1	98	83.687	Cavia_porcellus
ENSORLG00000015201	snd1	98	83.911	ENSCCAG00000036847	SND1	98	83.973	Cebus_capucinus
ENSORLG00000015201	snd1	98	84.022	ENSCATG00000035214	SND1	99	84.086	Cercocebus_atys
ENSORLG00000015201	snd1	98	83.781	ENSCLAG00000011796	SND1	95	87.543	Chinchilla_lanigera
ENSORLG00000015201	snd1	98	84.022	ENSCSAG00000010182	SND1	98	84.022	Chlorocebus_sabaeus
ENSORLG00000015201	snd1	79	75.248	ENSCHOG00000002218	SND1	86	75.248	Choloepus_hoffmanni
ENSORLG00000015201	snd1	100	83.535	ENSCPBG00000018094	SND1	98	84.340	Chrysemys_picta_bellii
ENSORLG00000015201	snd1	98	56.146	ENSCING00000000524	-	98	56.146	Ciona_intestinalis
ENSORLG00000015201	snd1	99	56.441	ENSCSAVG00000008807	-	98	57.016	Ciona_savignyi
ENSORLG00000015201	snd1	98	84.022	ENSCANG00000035119	SND1	98	84.022	Colobus_angolensis_palliatus
ENSORLG00000015201	snd1	98	83.575	ENSCGRG00001022514	Snd1	95	87.197	Cricetulus_griseus_chok1gshd
ENSORLG00000015201	snd1	97	83.634	ENSCGRG00000012277	Snd1	99	83.634	Cricetulus_griseus_crigri
ENSORLG00000015201	snd1	100	92.316	ENSCSEG00000008661	snd1	100	92.316	Cynoglossus_semilaevis
ENSORLG00000015201	snd1	100	94.621	ENSCVAG00000010316	snd1	100	94.621	Cyprinodon_variegatus
ENSORLG00000015201	snd1	100	88.390	ENSDARG00000006766	snd1	96	92.532	Danio_rerio
ENSORLG00000015201	snd1	97	82.115	ENSDNOG00000006795	SND1	100	82.115	Dasypus_novemcinctus
ENSORLG00000015201	snd1	98	83.799	ENSDORG00000000336	Snd1	98	83.799	Dipodomys_ordii
ENSORLG00000015201	snd1	98	49.404	FBgn0035121	Tudor-SN	97	49.563	Drosophila_melanogaster
ENSORLG00000015201	snd1	90	88.889	ENSETEG00000000375	SND1	92	88.889	Echinops_telfairi
ENSORLG00000015201	snd1	61	67.027	ENSEBUG00000014201	-	84	77.174	Eptatretus_burgeri
ENSORLG00000015201	snd1	98	83.790	ENSEASG00005008513	SND1	98	82.637	Equus_asinus_asinus
ENSORLG00000015201	snd1	98	83.799	ENSECAG00000011451	SND1	98	83.799	Equus_caballus
ENSORLG00000015201	snd1	98	74.637	ENSEEUG00000014737	SND1	98	74.637	Erinaceus_europaeus
ENSORLG00000015201	snd1	99	88.145	ENSELUG00000001805	snd1	95	88.715	Esox_lucius
ENSORLG00000015201	snd1	100	82.895	ENSFCAG00000008289	SND1	98	83.911	Felis_catus
ENSORLG00000015201	snd1	98	83.799	ENSFDAG00000015881	SND1	98	83.799	Fukomys_damarensis
ENSORLG00000015201	snd1	100	91.837	ENSFHEG00000004093	snd1	99	93.288	Fundulus_heteroclitus
ENSORLG00000015201	snd1	75	81.921	ENSGMOG00000018932	snd1	64	81.921	Gadus_morhua
ENSORLG00000015201	snd1	100	94.292	ENSGAFG00000008421	snd1	100	94.292	Gambusia_affinis
ENSORLG00000015201	snd1	100	60.304	ENSGACG00000019793	snd1	100	60.304	Gasterosteus_aculeatus
ENSORLG00000015201	snd1	98	84.022	ENSGGOG00000009614	SND1	99	83.726	Gorilla_gorilla
ENSORLG00000015201	snd1	100	92.865	ENSHBUG00000019135	snd1	98	93.400	Haplochromis_burtoni
ENSORLG00000015201	snd1	98	83.687	ENSHGLG00000003618	SND1	95	87.370	Heterocephalus_glaber_female
ENSORLG00000015201	snd1	99	83.113	ENSHGLG00100012449	SND1	99	83.687	Heterocephalus_glaber_male
ENSORLG00000015201	snd1	100	91.877	ENSHCOG00000005266	snd1	100	91.877	Hippocampus_comes
ENSORLG00000015201	snd1	99	87.816	ENSIPUG00000013279	snd1	98	88.616	Ictalurus_punctatus
ENSORLG00000015201	snd1	98	84.022	ENSSTOG00000002140	SND1	98	84.022	Ictidomys_tridecemlineatus
ENSORLG00000015201	snd1	98	83.799	ENSJJAG00000009561	Snd1	98	83.799	Jaculus_jaculus
ENSORLG00000015201	snd1	100	94.182	ENSKMAG00000016997	snd1	100	94.182	Kryptolebias_marmoratus
ENSORLG00000015201	snd1	100	93.194	ENSLBEG00000013563	snd1	100	93.194	Labrus_bergylta
ENSORLG00000015201	snd1	98	87.486	ENSLOCG00000015537	snd1	98	87.486	Lepisosteus_oculatus
ENSORLG00000015201	snd1	99	83.077	ENSLAFG00000009696	SND1	98	84.246	Loxodonta_africana
ENSORLG00000015201	snd1	98	84.022	ENSMFAG00000038114	SND1	99	84.086	Macaca_fascicularis
ENSORLG00000015201	snd1	98	84.022	ENSMMUG00000015432	SND1	98	84.022	Macaca_mulatta
ENSORLG00000015201	snd1	98	84.022	ENSMNEG00000039808	SND1	97	87.831	Macaca_nemestrina
ENSORLG00000015201	snd1	98	83.911	ENSMLEG00000029040	SND1	97	87.831	Mandrillus_leucophaeus
ENSORLG00000015201	snd1	100	93.414	ENSMAMG00000011739	snd1	100	93.414	Mastacembelus_armatus
ENSORLG00000015201	snd1	100	92.755	ENSMZEG00005005681	snd1	100	92.755	Maylandia_zebra
ENSORLG00000015201	snd1	98	84.022	ENSMICG00000000097	SND1	98	84.022	Microcebus_murinus
ENSORLG00000015201	snd1	98	84.134	ENSMOCG00000005040	Snd1	98	84.134	Microtus_ochrogaster
ENSORLG00000015201	snd1	100	93.414	ENSMMOG00000001795	snd1	100	93.414	Mola_mola
ENSORLG00000015201	snd1	98	83.240	ENSMODG00000015182	SND1	98	83.240	Monodelphis_domestica
ENSORLG00000015201	snd1	100	93.085	ENSMALG00000012071	snd1	100	93.085	Monopterus_albus
ENSORLG00000015201	snd1	98	83.687	MGP_CAROLIEiJ_G0028159	Snd1	96	87.175	Mus_caroli
ENSORLG00000015201	snd1	98	83.464	ENSMUSG00000001424	Snd1	97	85.424	Mus_musculus
ENSORLG00000015201	snd1	98	83.687	MGP_PahariEiJ_G0021917	Snd1	97	87.175	Mus_pahari
ENSORLG00000015201	snd1	98	83.687	MGP_SPRETEiJ_G0029159	Snd1	97	85.763	Mus_spretus
ENSORLG00000015201	snd1	100	82.785	ENSMPUG00000006545	SND1	98	83.799	Mustela_putorius_furo
ENSORLG00000015201	snd1	97	82.943	ENSMLUG00000017130	SND1	99	82.943	Myotis_lucifugus
ENSORLG00000015201	snd1	98	83.799	ENSNGAG00000011186	Snd1	98	83.799	Nannospalax_galili
ENSORLG00000015201	snd1	100	92.975	ENSNBRG00000006681	snd1	100	92.975	Neolamprologus_brichardi
ENSORLG00000015201	snd1	98	84.022	ENSNLEG00000012263	SND1	97	87.716	Nomascus_leucogenys
ENSORLG00000015201	snd1	91	88.889	ENSOPRG00000013405	SND1	91	88.889	Ochotona_princeps
ENSORLG00000015201	snd1	98	84.004	ENSODEG00000011502	SND1	98	84.004	Octodon_degus
ENSORLG00000015201	snd1	100	93.194	ENSONIG00000011481	snd1	97	93.194	Oreochromis_niloticus
ENSORLG00000015201	snd1	98	83.034	ENSOANG00000000817	SND1	98	83.034	Ornithorhynchus_anatinus
ENSORLG00000015201	snd1	100	82.237	ENSOCUG00000001620	SND1	98	83.240	Oryctolagus_cuniculus
ENSORLG00000015201	snd1	100	99.561	ENSORLG00020013991	snd1	100	99.561	Oryzias_latipes_hni
ENSORLG00000015201	snd1	100	99.671	ENSORLG00015012436	snd1	100	99.671	Oryzias_latipes_hsok
ENSORLG00000015201	snd1	100	96.487	ENSOMEG00000006406	snd1	100	96.487	Oryzias_melastigma
ENSORLG00000015201	snd1	98	83.835	ENSOGAG00000013356	SND1	93	83.835	Otolemur_garnettii
ENSORLG00000015201	snd1	97	81.623	ENSOARG00000002149	SND1	100	81.623	Ovis_aries
ENSORLG00000015201	snd1	98	83.911	ENSPPAG00000042947	SND1	99	83.464	Pan_paniscus
ENSORLG00000015201	snd1	100	82.895	ENSPPRG00000004494	SND1	98	83.911	Panthera_pardus
ENSORLG00000015201	snd1	100	82.785	ENSPTIG00000014214	SND1	98	83.799	Panthera_tigris_altaica
ENSORLG00000015201	snd1	98	83.911	ENSPTRG00000023911	SND1	99	83.464	Pan_troglodytes
ENSORLG00000015201	snd1	97	84.086	ENSPANG00000011997	SND1	99	84.086	Papio_anubis
ENSORLG00000015201	snd1	99	85.793	ENSPKIG00000023494	snd1	98	86.127	Paramormyrops_kingsleyae
ENSORLG00000015201	snd1	93	92.464	ENSPMGG00000003629	snd1	100	92.464	Periophthalmus_magnuspinnatus
ENSORLG00000015201	snd1	98	83.911	ENSPEMG00000010240	Snd1	98	83.911	Peromyscus_maniculatus_bairdii
ENSORLG00000015201	snd1	97	73.739	ENSPMAG00000007915	-	99	73.476	Petromyzon_marinus
ENSORLG00000015201	snd1	98	83.799	ENSPCIG00000011561	SND1	98	83.799	Phascolarctos_cinereus
ENSORLG00000015201	snd1	100	93.743	ENSPFOG00000001557	snd1	100	93.743	Poecilia_formosa
ENSORLG00000015201	snd1	100	93.853	ENSPLAG00000018459	snd1	97	93.853	Poecilia_latipinna
ENSORLG00000015201	snd1	100	93.963	ENSPMEG00000006803	snd1	100	93.963	Poecilia_mexicana
ENSORLG00000015201	snd1	100	93.963	ENSPREG00000002189	snd1	100	93.963	Poecilia_reticulata
ENSORLG00000015201	snd1	91	88.889	ENSPPYG00000017972	SND1	98	88.889	Pongo_abelii
ENSORLG00000015201	snd1	98	73.743	ENSPCAG00000011305	SND1	98	73.743	Procavia_capensis
ENSORLG00000015201	snd1	98	84.022	ENSPCOG00000026791	SND1	100	84.104	Propithecus_coquereli
ENSORLG00000015201	snd1	98	81.788	ENSPVAG00000013945	SND1	98	81.788	Pteropus_vampyrus
ENSORLG00000015201	snd1	100	92.645	ENSPNYG00000000932	snd1	100	92.645	Pundamilia_nyererei
ENSORLG00000015201	snd1	99	89.011	ENSPNAG00000001206	snd1	98	89.509	Pygocentrus_nattereri
ENSORLG00000015201	snd1	98	83.575	ENSRNOG00000031173	Snd1	100	82.751	Rattus_norvegicus
ENSORLG00000015201	snd1	71	88.447	ENSRBIG00000027782	-	93	88.447	Rhinopithecus_bieti
ENSORLG00000015201	snd1	98	84.022	ENSRROG00000033020	SND1	98	84.022	Rhinopithecus_roxellana
ENSORLG00000015201	snd1	98	83.799	ENSSBOG00000032461	SND1	99	83.352	Saimiri_boliviensis_boliviensis
ENSORLG00000015201	snd1	98	80.337	ENSSHAG00000015359	SND1	100	80.337	Sarcophilus_harrisii
ENSORLG00000015201	snd1	98	87.694	ENSSFOG00015001103	snd1	98	87.694	Scleropages_formosus
ENSORLG00000015201	snd1	100	92.645	ENSSMAG00000001932	snd1	95	92.645	Scophthalmus_maximus
ENSORLG00000015201	snd1	100	93.633	ENSSDUG00000002699	snd1	94	93.633	Seriola_dumerili
ENSORLG00000015201	snd1	100	86.389	ENSSLDG00000001950	snd1	100	86.389	Seriola_lalandi_dorsalis
ENSORLG00000015201	snd1	88	80.118	ENSSARG00000004877	SND1	92	80.118	Sorex_araneus
ENSORLG00000015201	snd1	72	80.102	ENSSPUG00000017586	SND1	96	81.109	Sphenodon_punctatus
ENSORLG00000015201	snd1	74	95.093	ENSSPAG00000021398	snd1	99	95.093	Stegastes_partitus
ENSORLG00000015201	snd1	98	83.799	ENSSSCG00000016590	SND1	98	83.799	Sus_scrofa
ENSORLG00000015201	snd1	100	91.611	ENSTRUG00000014067	snd1	100	90.779	Takifugu_rubripes
ENSORLG00000015201	snd1	100	91.328	ENSTNIG00000011019	snd1	100	91.328	Tetraodon_nigroviridis
ENSORLG00000015201	snd1	95	78.588	ENSTBEG00000003999	SND1	100	78.588	Tupaia_belangeri
ENSORLG00000015201	snd1	98	79.665	ENSTTRG00000006059	SND1	98	79.665	Tursiops_truncatus
ENSORLG00000015201	snd1	87	81.939	ENSUAMG00000005604	-	93	81.939	Ursus_americanus
ENSORLG00000015201	snd1	70	77.285	ENSUAMG00000002820	-	84	79.726	Ursus_americanus
ENSORLG00000015201	snd1	99	83.742	ENSUMAG00000005960	SND1	98	83.911	Ursus_maritimus
ENSORLG00000015201	snd1	77	88.889	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSORLG00000015201	snd1	100	82.895	ENSVVUG00000007226	SND1	98	83.911	Vulpes_vulpes
ENSORLG00000015201	snd1	97	80.552	ENSXETG00000023043	snd1	100	79.954	Xenopus_tropicalis
ENSORLG00000015201	snd1	94	91.568	ENSXCOG00000013629	snd1	99	91.568	Xiphophorus_couchianus
ENSORLG00000015201	snd1	100	94.512	ENSXMAG00000011469	snd1	100	94.512	Xiphophorus_maculatus