EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000015621 (Gene tree)
Gene ID: 101166664
Gene Symbol: -
Alias: -
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 5909 bases
Position: chr17:23013647-23019555
Accession: 101166664
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000019555	PRP38	PF03371.15	8.4e-55	1	1
ENSORLP00000036597	PRP38	PF03371.15	1.8e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000032966	-	969	-	ENSORLP00000036597	173 (aa)	-	-
ENSORLT00000019556	-	2514	XM_004079199	ENSORLP00000019555	458 (aa)	XP_004079247	H2MLH7

Gene Model

Click here to download ENSORLG00000015621's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000015621's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000015621	-	95	96.970	ENSACIG00000016459	-	96	96.970	Amphilophus_citrinellus
ENSORLG00000015621	-	95	96.951	ENSATEG00000014482	-	100	87.500	Anabas_testudineus
ENSORLG00000015621	-	88	92.810	ENSAMXG00000039494	-	51	84.589	Astyanax_mexicanus
ENSORLG00000015621	-	88	91.558	ENSBTAG00000047874	PRPF38B	85	63.445	Bos_taurus
ENSORLG00000015621	-	84	55.479	WBGene00022434	Y108G3AL.2	81	44.030	Caenorhabditis_elegans
ENSORLG00000015621	-	78	91.912	ENSCAFG00020010992	-	91	57.677	Canis_lupus_dingo
ENSORLG00000015621	-	88	91.558	ENSCHIG00000024357	-	85	63.445	Capra_hircus
ENSORLG00000015621	-	87	92.763	ENSCPOG00000039545	-	82	64.147	Cavia_porcellus
ENSORLG00000015621	-	87	92.763	ENSCLAG00000005801	-	83	63.270	Chinchilla_lanigera
ENSORLG00000015621	-	67	92.241	ENSCHOG00000008972	-	64	72.653	Choloepus_hoffmanni
ENSORLG00000015621	-	91	89.375	ENSCPBG00000028299	-	83	64.211	Chrysemys_picta_bellii
ENSORLG00000015621	-	84	73.793	ENSCSAVG00000009443	-	71	73.958	Ciona_savignyi
ENSORLG00000015621	-	95	96.951	ENSCSEG00000015030	-	100	82.468	Cynoglossus_semilaevis
ENSORLG00000015621	-	100	98.266	ENSCVAG00000005543	-	83	98.266	Cyprinodon_variegatus
ENSORLG00000015621	-	90	70.513	FBgn0030468	CG1622	93	70.229	Drosophila_melanogaster
ENSORLG00000015621	-	83	93.103	ENSETEG00000014690	-	92	63.991	Echinops_telfairi
ENSORLG00000015621	-	95	88.757	ENSELUG00000010390	-	97	66.795	Esox_lucius
ENSORLG00000015621	-	54	93.617	ENSFALG00000002673	-	75	61.084	Ficedula_albicollis
ENSORLG00000015621	-	95	91.463	ENSGMOG00000012080	-	99	72.421	Gadus_morhua
ENSORLG00000015621	-	91	89.873	ENSGALG00000001972	-	83	63.941	Gallus_gallus
ENSORLG00000015621	-	95	98.171	ENSGAFG00000008943	-	100	82.328	Gambusia_affinis
ENSORLG00000015621	-	91	89.375	ENSGAGG00000001563	-	83	64.632	Gopherus_agassizii
ENSORLG00000015621	-	87	92.763	ENSHGLG00000016583	PRPF38B	83	63.347	Heterocephalus_glaber_female
ENSORLG00000015621	-	87	92.763	ENSHGLG00100015525	-	83	63.136	Heterocephalus_glaber_male
ENSORLG00000015621	-	95	93.293	ENSHCOG00000001071	-	100	81.385	Hippocampus_comes
ENSORLG00000015621	-	95	97.561	ENSKMAG00000005540	-	100	84.144	Kryptolebias_marmoratus
ENSORLG00000015621	-	87	92.053	ENSLACG00000015511	-	97	59.475	Latimeria_chalumnae
ENSORLG00000015621	-	87	92.763	ENSMOCG00000020285	-	82	63.636	Microtus_ochrogaster
ENSORLG00000015621	-	94	93.865	ENSMMOG00000011639	-	100	82.869	Mola_mola
ENSORLG00000015621	-	85	94.558	ENSMODG00000002350	-	87	85.091	Monodelphis_domestica
ENSORLG00000015621	-	95	96.951	ENSMALG00000019479	-	100	86.638	Monopterus_albus
ENSORLG00000015621	-	95	96.970	ENSNBRG00000019221	-	98	96.970	Neolamprologus_brichardi
ENSORLG00000015621	-	95	96.951	ENSONIG00000010129	-	100	84.052	Oreochromis_niloticus
ENSORLG00000015621	-	88	92.208	ENSOANG00000007343	-	92	60.435	Ornithorhynchus_anatinus
ENSORLG00000015621	-	100	100.000	ENSORLG00020016276	-	100	99.563	Oryzias_latipes_hni
ENSORLG00000015621	-	100	100.000	ENSORLG00015016270	-	100	99.345	Oryzias_latipes_hsok
ENSORLG00000015621	-	100	100.000	ENSOMEG00000022050	-	97	99.398	Oryzias_melastigma
ENSORLG00000015621	-	87	92.763	ENSOGAG00000027048	-	82	63.812	Otolemur_garnettii
ENSORLG00000015621	-	84	93.151	ENSOARG00000018899	-	82	64.901	Ovis_aries
ENSORLG00000015621	-	95	90.419	ENSPKIG00000017291	-	90	65.021	Paramormyrops_kingsleyae
ENSORLG00000015621	-	88	94.771	ENSPKIG00000004815	-	94	65.553	Paramormyrops_kingsleyae
ENSORLG00000015621	-	91	89.375	ENSPSIG00000016569	-	83	63.368	Pelodiscus_sinensis
ENSORLG00000015621	-	93	91.304	ENSPMGG00000017585	-	97	93.631	Periophthalmus_magnuspinnatus
ENSORLG00000015621	-	82	79.592	ENSPMAG00000007150	-	92	80.137	Petromyzon_marinus
ENSORLG00000015621	-	100	97.688	ENSPFOG00000004025	-	92	97.688	Poecilia_formosa
ENSORLG00000015621	-	95	97.561	ENSPLAG00000019842	-	100	81.897	Poecilia_latipinna
ENSORLG00000015621	-	95	98.171	ENSPMEG00000004807	-	97	81.897	Poecilia_mexicana
ENSORLG00000015621	-	100	97.688	ENSPREG00000015599	-	94	97.688	Poecilia_reticulata
ENSORLG00000015621	-	88	92.157	ENSPNAG00000017484	-	95	65.314	Pygocentrus_nattereri
ENSORLG00000015621	-	87	92.763	ENSRNOG00000020438	Prpf38b	84	62.979	Rattus_norvegicus
ENSORLG00000015621	-	99	87.283	ENSSFOG00015011251	-	90	87.283	Scleropages_formosus
ENSORLG00000015621	-	92	84.277	ENSSFOG00015004405	-	94	81.143	Scleropages_formosus
ENSORLG00000015621	-	100	95.376	ENSSMAG00000001781	-	94	95.376	Scophthalmus_maximus
ENSORLG00000015621	-	100	97.110	ENSSDUG00000016574	-	94	97.110	Seriola_dumerili
ENSORLG00000015621	-	100	97.110	ENSSLDG00000023487	-	94	97.110	Seriola_lalandi_dorsalis
ENSORLG00000015621	-	90	89.873	ENSSPUG00000017742	-	83	64.059	Sphenodon_punctatus
ENSORLG00000015621	-	93	94.410	ENSTRUG00000011765	-	100	83.226	Takifugu_rubripes
ENSORLG00000015621	-	94	94.479	ENSTNIG00000015299	-	99	70.153	Tetraodon_nigroviridis
ENSORLG00000015621	-	85	77.551	ENSTBEG00000007504	-	87	58.696	Tupaia_belangeri
ENSORLG00000015621	-	87	92.763	ENSTTRG00000006479	-	85	63.025	Tursiops_truncatus
ENSORLG00000015621	-	83	69.231	ENSVPAG00000005541	-	84	55.032	Vicugna_pacos
ENSORLG00000015621	-	88	92.810	ENSXETG00000005260	prpf38b	88	59.448	Xenopus_tropicalis
ENSORLG00000015621	-	95	98.171	ENSXCOG00000008329	-	100	82.328	Xiphophorus_couchianus
ENSORLG00000015621	-	95	98.171	ENSXMAG00000023831	-	100	81.897	Xiphophorus_maculatus