EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000015955 (Gene tree)
Gene ID: 101163944
Gene Symbol: sf3b6
Alias: -
Full Name: splicing factor 3b subunit 6
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 1285 bases
Position: chr24:13001865-13003149
Accession: 101163944
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000019969	RRM_1	PF00076.22	4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000019970	-	378	XM_004083665	ENSORLP00000019969	125 (aa)	XP_004083713	H2MMM4

Gene Model

Click here to download ENSORLG00000015955's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000015955's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000015955	sf3b6	59	32.051	ENSORLG00000019421	snrpb2	51	30.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000015955	sf3b6	100	98.400	ENSG00000115128	SF3B6	100	98.400	Homo_sapiens
ENSORLG00000015955	sf3b6	100	98.400	ENSAPOG00000023788	sf3b6	100	98.400	Acanthochromis_polyacanthus
ENSORLG00000015955	sf3b6	100	98.400	ENSAMEG00000002786	SF3B6	100	98.400	Ailuropoda_melanoleuca
ENSORLG00000015955	sf3b6	100	98.400	ENSACIG00000012608	sf3b6	100	98.400	Amphilophus_citrinellus
ENSORLG00000015955	sf3b6	100	98.400	ENSAOCG00000013394	sf3b6	100	98.400	Amphiprion_ocellaris
ENSORLG00000015955	sf3b6	100	98.400	ENSAPEG00000015311	sf3b6	100	98.400	Amphiprion_percula
ENSORLG00000015955	sf3b6	100	98.400	ENSATEG00000016569	sf3b6	100	98.400	Anabas_testudineus
ENSORLG00000015955	sf3b6	100	98.400	ENSACAG00000011677	SF3B6	100	98.400	Anolis_carolinensis
ENSORLG00000015955	sf3b6	100	98.400	ENSANAG00000027284	SF3B6	95	98.400	Aotus_nancymaae
ENSORLG00000015955	sf3b6	100	98.400	ENSACLG00000007793	sf3b6	100	98.400	Astatotilapia_calliptera
ENSORLG00000015955	sf3b6	100	98.400	ENSAMXG00000034888	sf3b6	100	98.400	Astyanax_mexicanus
ENSORLG00000015955	sf3b6	100	96.800	ENSBTAG00000049128	-	100	96.800	Bos_taurus
ENSORLG00000015955	sf3b6	100	98.400	ENSBTAG00000003407	SF3B6	100	98.400	Bos_taurus
ENSORLG00000015955	sf3b6	100	66.400	WBGene00016808	C50D2.5	91	66.400	Caenorhabditis_elegans
ENSORLG00000015955	sf3b6	100	98.400	ENSCJAG00000007716	SF3B6	100	98.400	Callithrix_jacchus
ENSORLG00000015955	sf3b6	100	98.400	ENSCAFG00000003957	SF3B6	100	98.400	Canis_familiaris
ENSORLG00000015955	sf3b6	100	98.400	ENSCAFG00020025576	SF3B6	100	98.400	Canis_lupus_dingo
ENSORLG00000015955	sf3b6	100	98.400	ENSCHIG00000009902	SF3B6	100	98.400	Capra_hircus
ENSORLG00000015955	sf3b6	100	98.400	ENSTSYG00000013978	SF3B6	100	98.400	Carlito_syrichta
ENSORLG00000015955	sf3b6	97	95.041	ENSCAPG00000016302	SF3B6	99	95.041	Cavia_aperea
ENSORLG00000015955	sf3b6	100	98.400	ENSCPOG00000008016	SF3B6	100	98.400	Cavia_porcellus
ENSORLG00000015955	sf3b6	99	92.742	ENSCCAG00000018894	-	96	92.742	Cebus_capucinus
ENSORLG00000015955	sf3b6	100	98.400	ENSCCAG00000036653	SF3B6	100	98.400	Cebus_capucinus
ENSORLG00000015955	sf3b6	100	98.400	ENSCATG00000030936	SF3B6	100	98.400	Cercocebus_atys
ENSORLG00000015955	sf3b6	100	98.400	ENSCLAG00000014512	SF3B6	100	98.400	Chinchilla_lanigera
ENSORLG00000015955	sf3b6	100	98.400	ENSCSAG00000008390	SF3B6	100	98.400	Chlorocebus_sabaeus
ENSORLG00000015955	sf3b6	99	72.581	ENSCHOG00000013886	-	99	72.581	Choloepus_hoffmanni
ENSORLG00000015955	sf3b6	100	98.400	ENSCHOG00000000689	SF3B6	100	98.400	Choloepus_hoffmanni
ENSORLG00000015955	sf3b6	100	98.400	ENSCPBG00000020042	SF3B6	100	98.400	Chrysemys_picta_bellii
ENSORLG00000015955	sf3b6	98	79.675	ENSCING00000012689	-	97	79.675	Ciona_intestinalis
ENSORLG00000015955	sf3b6	100	98.400	ENSCANG00000030559	SF3B6	100	98.400	Colobus_angolensis_palliatus
ENSORLG00000015955	sf3b6	100	98.400	ENSCGRG00001014595	Sf3b6	100	98.400	Cricetulus_griseus_chok1gshd
ENSORLG00000015955	sf3b6	100	98.400	ENSCGRG00000005272	Sf3b6	100	98.400	Cricetulus_griseus_crigri
ENSORLG00000015955	sf3b6	100	99.200	ENSCSEG00000019017	sf3b6	100	99.200	Cynoglossus_semilaevis
ENSORLG00000015955	sf3b6	100	99.200	ENSCVAG00000005055	sf3b6	100	99.200	Cyprinodon_variegatus
ENSORLG00000015955	sf3b6	100	98.400	ENSDARG00000009753	sf3b6	100	98.400	Danio_rerio
ENSORLG00000015955	sf3b6	100	98.400	ENSDNOG00000007148	SF3B6	100	98.400	Dasypus_novemcinctus
ENSORLG00000015955	sf3b6	99	80.952	ENSDORG00000027390	-	98	80.952	Dipodomys_ordii
ENSORLG00000015955	sf3b6	100	98.400	ENSDORG00000009772	Sf3b6	100	98.400	Dipodomys_ordii
ENSORLG00000015955	sf3b6	99	80.952	ENSDORG00000029761	-	98	80.952	Dipodomys_ordii
ENSORLG00000015955	sf3b6	92	75.652	FBgn0035692	Sf3b6	95	75.652	Drosophila_melanogaster
ENSORLG00000015955	sf3b6	92	90.435	ENSEBUG00000004424	sf3b6	91	90.435	Eptatretus_burgeri
ENSORLG00000015955	sf3b6	100	87.200	ENSEASG00005008061	-	100	87.200	Equus_asinus_asinus
ENSORLG00000015955	sf3b6	100	98.400	ENSEASG00005009993	SF3B6	100	98.400	Equus_asinus_asinus
ENSORLG00000015955	sf3b6	81	94.059	ENSECAG00000015618	SF3B6	93	94.059	Equus_caballus
ENSORLG00000015955	sf3b6	79	84.848	ENSECAG00000027755	-	85	84.848	Equus_caballus
ENSORLG00000015955	sf3b6	100	100.000	ENSELUG00000010379	sf3b6	100	100.000	Esox_lucius
ENSORLG00000015955	sf3b6	100	98.400	ENSFCAG00000031365	SF3B6	100	98.400	Felis_catus
ENSORLG00000015955	sf3b6	100	98.400	ENSFALG00000001651	SF3B6	100	98.400	Ficedula_albicollis
ENSORLG00000015955	sf3b6	100	98.400	ENSFDAG00000007864	SF3B6	100	98.400	Fukomys_damarensis
ENSORLG00000015955	sf3b6	100	99.200	ENSFHEG00000000685	sf3b6	100	99.200	Fundulus_heteroclitus
ENSORLG00000015955	sf3b6	100	99.200	ENSGMOG00000005123	sf3b6	100	99.200	Gadus_morhua
ENSORLG00000015955	sf3b6	73	97.802	ENSGALG00000016501	SF3B6	100	97.802	Gallus_gallus
ENSORLG00000015955	sf3b6	100	98.400	ENSGAFG00000009334	sf3b6	100	98.400	Gambusia_affinis
ENSORLG00000015955	sf3b6	100	99.200	ENSGACG00000004803	sf3b6	100	99.200	Gasterosteus_aculeatus
ENSORLG00000015955	sf3b6	100	98.400	ENSGAGG00000012240	SF3B6	100	98.400	Gopherus_agassizii
ENSORLG00000015955	sf3b6	100	98.400	ENSGGOG00000040806	SF3B6	100	98.400	Gorilla_gorilla
ENSORLG00000015955	sf3b6	100	98.400	ENSHBUG00000012556	sf3b6	100	98.400	Haplochromis_burtoni
ENSORLG00000015955	sf3b6	100	98.400	ENSHGLG00000014895	SF3B14	100	98.400	Heterocephalus_glaber_female
ENSORLG00000015955	sf3b6	100	98.400	ENSHGLG00100008639	SF3B14	100	98.400	Heterocephalus_glaber_male
ENSORLG00000015955	sf3b6	100	99.200	ENSHCOG00000019962	sf3b6	100	99.200	Hippocampus_comes
ENSORLG00000015955	sf3b6	100	98.400	ENSIPUG00000023800	sf3b6	100	98.400	Ictalurus_punctatus
ENSORLG00000015955	sf3b6	100	98.400	ENSJJAG00000021819	Sf3b6	100	98.400	Jaculus_jaculus
ENSORLG00000015955	sf3b6	100	98.400	ENSKMAG00000004000	sf3b6	100	98.400	Kryptolebias_marmoratus
ENSORLG00000015955	sf3b6	100	100.000	ENSLBEG00000022937	sf3b6	100	100.000	Labrus_bergylta
ENSORLG00000015955	sf3b6	100	98.400	ENSLACG00000014326	SF3B6	100	98.400	Latimeria_chalumnae
ENSORLG00000015955	sf3b6	100	98.400	ENSLOCG00000016481	sf3b6	100	98.400	Lepisosteus_oculatus
ENSORLG00000015955	sf3b6	100	98.400	ENSLAFG00000029423	SF3B6	100	98.400	Loxodonta_africana
ENSORLG00000015955	sf3b6	100	98.400	ENSMFAG00000038178	SF3B6	100	98.400	Macaca_fascicularis
ENSORLG00000015955	sf3b6	100	98.400	ENSMMUG00000001282	SF3B6	100	98.400	Macaca_mulatta
ENSORLG00000015955	sf3b6	100	98.400	ENSMNEG00000029050	SF3B6	100	98.400	Macaca_nemestrina
ENSORLG00000015955	sf3b6	100	98.400	ENSMLEG00000019896	SF3B6	100	98.400	Mandrillus_leucophaeus
ENSORLG00000015955	sf3b6	78	96.907	ENSMAMG00000007713	sf3b6	88	96.907	Mastacembelus_armatus
ENSORLG00000015955	sf3b6	100	98.400	ENSMZEG00005003557	sf3b6	100	98.400	Maylandia_zebra
ENSORLG00000015955	sf3b6	100	98.400	ENSMGAG00000014057	SF3B6	100	98.400	Meleagris_gallopavo
ENSORLG00000015955	sf3b6	100	98.400	ENSMAUG00000000586	-	100	98.400	Mesocricetus_auratus
ENSORLG00000015955	sf3b6	100	98.400	ENSMICG00000032874	SF3B6	100	98.400	Microcebus_murinus
ENSORLG00000015955	sf3b6	100	98.400	ENSMOCG00000014338	Sf3b6	100	98.400	Microtus_ochrogaster
ENSORLG00000015955	sf3b6	100	99.200	ENSMMOG00000015653	sf3b6	100	99.200	Mola_mola
ENSORLG00000015955	sf3b6	100	91.200	ENSMODG00000002144	SF3B6	100	91.200	Monodelphis_domestica
ENSORLG00000015955	sf3b6	100	99.200	ENSMALG00000019642	sf3b6	67	99.200	Monopterus_albus
ENSORLG00000015955	sf3b6	100	98.400	MGP_CAROLIEiJ_G0017590	Sf3b6	100	98.400	Mus_caroli
ENSORLG00000015955	sf3b6	100	98.400	ENSMUSG00000037361	Sf3b6	100	98.400	Mus_musculus
ENSORLG00000015955	sf3b6	100	98.400	MGP_PahariEiJ_G0029348	Sf3b6	100	98.400	Mus_pahari
ENSORLG00000015955	sf3b6	100	98.400	MGP_SPRETEiJ_G0018434	Sf3b6	100	98.400	Mus_spretus
ENSORLG00000015955	sf3b6	100	98.400	ENSMPUG00000013957	SF3B6	100	98.400	Mustela_putorius_furo
ENSORLG00000015955	sf3b6	100	96.800	ENSMLUG00000002473	SF3B6	100	96.800	Myotis_lucifugus
ENSORLG00000015955	sf3b6	100	98.400	ENSNGAG00000020256	Sf3b6	100	98.400	Nannospalax_galili
ENSORLG00000015955	sf3b6	100	98.400	ENSNBRG00000018244	sf3b6	100	98.400	Neolamprologus_brichardi
ENSORLG00000015955	sf3b6	100	98.400	ENSNLEG00000000815	-	100	98.400	Nomascus_leucogenys
ENSORLG00000015955	sf3b6	87	98.165	ENSODEG00000009547	SF3B6	92	98.165	Octodon_degus
ENSORLG00000015955	sf3b6	100	98.400	ENSONIG00000001219	sf3b6	100	98.400	Oreochromis_niloticus
ENSORLG00000015955	sf3b6	100	98.400	ENSOANG00000007627	SF3B6	100	98.400	Ornithorhynchus_anatinus
ENSORLG00000015955	sf3b6	100	98.400	ENSOCUG00000022008	SF3B6	100	98.400	Oryctolagus_cuniculus
ENSORLG00000015955	sf3b6	100	100.000	ENSORLG00020005875	sf3b6	100	100.000	Oryzias_latipes_hni
ENSORLG00000015955	sf3b6	100	100.000	ENSORLG00015001347	sf3b6	100	100.000	Oryzias_latipes_hsok
ENSORLG00000015955	sf3b6	100	98.400	ENSOMEG00000014506	sf3b6	100	98.400	Oryzias_melastigma
ENSORLG00000015955	sf3b6	100	98.400	ENSOGAG00000004468	SF3B6	100	98.400	Otolemur_garnettii
ENSORLG00000015955	sf3b6	100	98.400	ENSOARG00000017819	SF3B6	100	98.400	Ovis_aries
ENSORLG00000015955	sf3b6	100	98.400	ENSPPAG00000027816	SF3B6	100	98.400	Pan_paniscus
ENSORLG00000015955	sf3b6	100	98.400	ENSPPRG00000023257	SF3B6	100	98.400	Panthera_pardus
ENSORLG00000015955	sf3b6	100	98.400	ENSPTIG00000013322	SF3B6	100	98.400	Panthera_tigris_altaica
ENSORLG00000015955	sf3b6	100	98.400	ENSPTRG00000011709	SF3B6	100	98.400	Pan_troglodytes
ENSORLG00000015955	sf3b6	100	98.400	ENSPANG00000021963	SF3B6	100	98.400	Papio_anubis
ENSORLG00000015955	sf3b6	100	98.400	ENSPKIG00000012311	sf3b6	100	98.400	Paramormyrops_kingsleyae
ENSORLG00000015955	sf3b6	92	98.261	ENSPSIG00000017115	SF3B6	100	98.261	Pelodiscus_sinensis
ENSORLG00000015955	sf3b6	78	96.907	ENSPMGG00000014621	sf3b6	81	96.907	Periophthalmus_magnuspinnatus
ENSORLG00000015955	sf3b6	100	98.400	ENSPEMG00000010308	Sf3b6	100	98.400	Peromyscus_maniculatus_bairdii
ENSORLG00000015955	sf3b6	94	88.136	ENSPMAG00000006008	sf3b6	94	88.136	Petromyzon_marinus
ENSORLG00000015955	sf3b6	99	75.806	ENSPCIG00000015858	-	99	75.806	Phascolarctos_cinereus
ENSORLG00000015955	sf3b6	100	98.400	ENSPCIG00000022128	-	100	98.400	Phascolarctos_cinereus
ENSORLG00000015955	sf3b6	100	98.400	ENSPFOG00000012494	sf3b6	100	98.400	Poecilia_formosa
ENSORLG00000015955	sf3b6	100	98.400	ENSPLAG00000020460	sf3b6	100	98.400	Poecilia_latipinna
ENSORLG00000015955	sf3b6	100	98.400	ENSPMEG00000004426	sf3b6	100	98.400	Poecilia_mexicana
ENSORLG00000015955	sf3b6	100	98.400	ENSPPYG00000012603	SF3B6	100	98.400	Pongo_abelii
ENSORLG00000015955	sf3b6	100	98.400	ENSPVAG00000011346	SF3B6	100	98.400	Pteropus_vampyrus
ENSORLG00000015955	sf3b6	100	98.400	ENSPNYG00000021832	sf3b6	100	98.400	Pundamilia_nyererei
ENSORLG00000015955	sf3b6	100	98.400	ENSPNAG00000008845	sf3b6	100	98.400	Pygocentrus_nattereri
ENSORLG00000015955	sf3b6	100	83.200	ENSRNOG00000046172	Sf3b6	100	83.200	Rattus_norvegicus
ENSORLG00000015955	sf3b6	100	98.400	ENSRBIG00000039598	SF3B6	100	98.400	Rhinopithecus_bieti
ENSORLG00000015955	sf3b6	100	98.400	ENSRROG00000011368	SF3B6	100	98.400	Rhinopithecus_roxellana
ENSORLG00000015955	sf3b6	100	98.400	ENSSBOG00000002914	SF3B6	100	98.400	Saimiri_boliviensis_boliviensis
ENSORLG00000015955	sf3b6	100	98.400	ENSSFOG00015014370	sf3b6	100	98.400	Scleropages_formosus
ENSORLG00000015955	sf3b6	100	100.000	ENSSMAG00000004566	sf3b6	100	100.000	Scophthalmus_maximus
ENSORLG00000015955	sf3b6	100	98.400	ENSSDUG00000006538	sf3b6	100	98.400	Seriola_dumerili
ENSORLG00000015955	sf3b6	100	98.400	ENSSLDG00000004494	sf3b6	100	98.400	Seriola_lalandi_dorsalis
ENSORLG00000015955	sf3b6	100	98.400	ENSSARG00000011902	-	100	98.400	Sorex_araneus
ENSORLG00000015955	sf3b6	100	98.400	ENSSPUG00000014919	SF3B6	100	98.400	Sphenodon_punctatus
ENSORLG00000015955	sf3b6	100	98.400	ENSSPAG00000013201	sf3b6	100	98.400	Stegastes_partitus
ENSORLG00000015955	sf3b6	100	98.400	ENSSSCG00000008587	SF3B6	100	98.400	Sus_scrofa
ENSORLG00000015955	sf3b6	100	98.400	ENSTGUG00000013191	SF3B6	100	98.400	Taeniopygia_guttata
ENSORLG00000015955	sf3b6	100	98.400	ENSTRUG00000025286	sf3b6	100	98.400	Takifugu_rubripes
ENSORLG00000015955	sf3b6	100	98.400	ENSTNIG00000009719	sf3b6	100	98.400	Tetraodon_nigroviridis
ENSORLG00000015955	sf3b6	92	98.261	ENSTBEG00000012532	SF3B6	100	98.261	Tupaia_belangeri
ENSORLG00000015955	sf3b6	92	98.261	ENSTTRG00000013430	SF3B6	100	98.261	Tursiops_truncatus
ENSORLG00000015955	sf3b6	100	98.400	ENSUAMG00000025329	SF3B6	100	98.400	Ursus_americanus
ENSORLG00000015955	sf3b6	100	80.159	ENSUAMG00000000978	-	100	80.159	Ursus_americanus
ENSORLG00000015955	sf3b6	100	98.400	ENSUMAG00000022835	SF3B6	100	98.400	Ursus_maritimus
ENSORLG00000015955	sf3b6	92	98.261	ENSVPAG00000005546	SF3B6	100	98.261	Vicugna_pacos
ENSORLG00000015955	sf3b6	100	98.400	ENSVVUG00000010874	SF3B6	100	98.400	Vulpes_vulpes
ENSORLG00000015955	sf3b6	100	97.600	ENSXETG00000018204	sf3b6	100	97.600	Xenopus_tropicalis
ENSORLG00000015955	sf3b6	86	85.841	ENSXCOG00000008477	sf3b6	88	85.841	Xiphophorus_couchianus
ENSORLG00000015955	sf3b6	100	98.400	ENSXMAG00000010747	sf3b6	100	98.400	Xiphophorus_maculatus