EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000016239 (Gene tree)
Gene ID: 101173007
Gene Symbol: smg5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 60913 bases
Position: chr16:28991380-29052292
Accession: 101173007
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000026952	EST1	PF10374.9	1.7e-23	1	1
ENSORLP00000020330	EST1	PF10374.9	1.7e-23	1	1
ENSORLP00000026952	EST1_DNA_bind	PF10373.9	4.6e-41	1	1
ENSORLP00000020330	EST1_DNA_bind	PF10373.9	4.7e-41	1	1
ENSORLP00000026952	PIN_4	PF13638.6	2e-05	1	1
ENSORLP00000020330	PIN_4	PF13638.6	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000037463	-	7330	XM_023964170	ENSORLP00000026952	1109 (aa)	XP_023819938	UPI000CE21D48
ENSORLT00000020331	-	4866	-	ENSORLP00000020330	1118 (aa)	-	H2MNM4

Gene Model

Click here to download ENSORLG00000016239's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000016239's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000016239	smg5	99	62.063	ENSG00000198952	SMG5	50	59.300	Homo_sapiens
ENSORLG00000016239	smg5	100	86.513	ENSAPOG00000019690	smg5	100	85.537	Acanthochromis_polyacanthus
ENSORLG00000016239	smg5	100	81.171	ENSACIG00000001353	smg5	99	80.270	Amphilophus_citrinellus
ENSORLG00000016239	smg5	100	87.389	ENSAOCG00000019483	smg5	100	86.121	Amphiprion_ocellaris
ENSORLG00000016239	smg5	100	87.100	ENSAPEG00000022949	smg5	100	86.210	Amphiprion_percula
ENSORLG00000016239	smg5	100	84.444	ENSATEG00000005348	smg5	100	84.389	Anabas_testudineus
ENSORLG00000016239	smg5	98	64.583	ENSAPLG00000010263	SMG5	100	61.434	Anas_platyrhynchos
ENSORLG00000016239	smg5	100	85.702	ENSACLG00000009311	smg5	100	85.053	Astatotilapia_calliptera
ENSORLG00000016239	smg5	100	76.093	ENSAMXG00000024616	smg5	100	76.208	Astyanax_mexicanus
ENSORLG00000016239	smg5	99	36.323	ENSBTAG00000021747	-	85	50.243	Bos_taurus
ENSORLG00000016239	smg5	99	61.973	ENSCJAG00000005684	SMG5	96	60.519	Callithrix_jacchus
ENSORLG00000016239	smg5	85	51.117	ENSCHIG00000006323	-	85	50.620	Capra_hircus
ENSORLG00000016239	smg5	99	61.239	ENSTSYG00000004099	SMG5	99	60.467	Carlito_syrichta
ENSORLG00000016239	smg5	97	45.733	ENSCAPG00000003631	SMG5	89	54.128	Cavia_aperea
ENSORLG00000016239	smg5	99	61.614	ENSCCAG00000027409	SMG5	51	57.713	Cebus_capucinus
ENSORLG00000016239	smg5	51	75.451	ENSCHOG00000008741	-	57	75.451	Choloepus_hoffmanni
ENSORLG00000016239	smg5	94	62.736	ENSCPBG00000025848	SMG5	100	60.771	Chrysemys_picta_bellii
ENSORLG00000016239	smg5	74	37.965	ENSCING00000008706	-	84	37.717	Ciona_intestinalis
ENSORLG00000016239	smg5	99	61.601	ENSCGRG00001006336	Smg5	99	60.162	Cricetulus_griseus_chok1gshd
ENSORLG00000016239	smg5	98	61.426	ENSCGRG00000005111	Smg5	100	60.000	Cricetulus_griseus_crigri
ENSORLG00000016239	smg5	100	81.317	ENSCSEG00000014220	smg5	100	80.872	Cynoglossus_semilaevis
ENSORLG00000016239	smg5	100	71.467	ENSCVAG00000000529	smg5	99	70.414	Cyprinodon_variegatus
ENSORLG00000016239	smg5	100	76.068	ENSDARG00000041481	smg5	100	76.486	Danio_rerio
ENSORLG00000016239	smg5	78	40.214	ENSDNOG00000039862	-	86	39.410	Dasypus_novemcinctus
ENSORLG00000016239	smg5	74	84.466	ENSETEG00000010336	SMG5	81	84.466	Echinops_telfairi
ENSORLG00000016239	smg5	66	53.827	ENSEBUG00000003739	smg5	77	53.448	Eptatretus_burgeri
ENSORLG00000016239	smg5	66	77.746	ENSEEUG00000012690	SMG5	74	76.620	Erinaceus_europaeus
ENSORLG00000016239	smg5	100	80.107	ENSELUG00000012585	smg5	100	78.616	Esox_lucius
ENSORLG00000016239	smg5	59	65.038	ENSFALG00000001166	-	96	60.731	Ficedula_albicollis
ENSORLG00000016239	smg5	98	76.109	ENSFHEG00000013939	smg5	95	87.227	Fundulus_heteroclitus
ENSORLG00000016239	smg5	100	76.687	ENSGMOG00000007310	smg5	100	76.316	Gadus_morhua
ENSORLG00000016239	smg5	99	64.395	ENSGALG00000029918	-	99	60.997	Gallus_gallus
ENSORLG00000016239	smg5	92	87.540	ENSGAFG00000021691	smg5	99	87.540	Gambusia_affinis
ENSORLG00000016239	smg5	100	83.378	ENSGACG00000013142	smg5	100	83.199	Gasterosteus_aculeatus
ENSORLG00000016239	smg5	99	64.585	ENSGAGG00000016131	SMG5	99	61.744	Gopherus_agassizii
ENSORLG00000016239	smg5	99	62.063	ENSGGOG00000010932	SMG5	99	60.198	Gorilla_gorilla
ENSORLG00000016239	smg5	100	85.372	ENSHBUG00000008654	smg5	100	85.169	Haplochromis_burtoni
ENSORLG00000016239	smg5	87	76.275	ENSHCOG00000010229	smg5	91	81.995	Hippocampus_comes
ENSORLG00000016239	smg5	100	76.288	ENSIPUG00000006624	Smg5	100	75.311	Ictalurus_punctatus
ENSORLG00000016239	smg5	100	86.133	ENSKMAG00000014586	smg5	100	85.778	Kryptolebias_marmoratus
ENSORLG00000016239	smg5	100	84.684	ENSLBEG00000002145	smg5	100	83.882	Labrus_bergylta
ENSORLG00000016239	smg5	100	68.468	ENSLOCG00000008380	smg5	99	71.278	Lepisosteus_oculatus
ENSORLG00000016239	smg5	99	57.194	ENSMLEG00000041192	SMG5	91	67.143	Mandrillus_leucophaeus
ENSORLG00000016239	smg5	100	84.220	ENSMAMG00000010683	smg5	100	84.164	Mastacembelus_armatus
ENSORLG00000016239	smg5	100	77.102	ENSMZEG00005015815	smg5	99	75.806	Maylandia_zebra
ENSORLG00000016239	smg5	65	74.348	ENSMZEG00005016543	smg5	100	72.490	Maylandia_zebra
ENSORLG00000016239	smg5	99	61.241	ENSMAUG00000010381	Smg5	99	60.342	Mesocricetus_auratus
ENSORLG00000016239	smg5	100	80.142	ENSMMOG00000017199	smg5	100	79.344	Mola_mola
ENSORLG00000016239	smg5	88	61.735	ENSMODG00000016901	SMG5	98	59.438	Monodelphis_domestica
ENSORLG00000016239	smg5	72	34.271	ENSMODG00000010675	-	88	34.527	Monodelphis_domestica
ENSORLG00000016239	smg5	69	35.825	ENSMODG00000004511	-	77	35.443	Monodelphis_domestica
ENSORLG00000016239	smg5	70	34.908	ENSMODG00000004735	-	87	34.908	Monodelphis_domestica
ENSORLG00000016239	smg5	72	36.453	ENSMODG00000004532	-	84	34.975	Monodelphis_domestica
ENSORLG00000016239	smg5	100	83.052	ENSMALG00000010375	smg5	100	82.102	Monopterus_albus
ENSORLG00000016239	smg5	99	61.712	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSORLG00000016239	smg5	99	61.643	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSORLG00000016239	smg5	99	61.844	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSORLG00000016239	smg5	99	61.552	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSORLG00000016239	smg5	94	60.229	ENSMPUG00000004546	SMG5	54	58.379	Mustela_putorius_furo
ENSORLG00000016239	smg5	99	61.462	ENSNGAG00000020706	Smg5	99	60.288	Nannospalax_galili
ENSORLG00000016239	smg5	79	49.877	ENSNGAG00000012101	-	86	49.631	Nannospalax_galili
ENSORLG00000016239	smg5	97	75.907	ENSNBRG00000004332	smg5	97	74.419	Neolamprologus_brichardi
ENSORLG00000016239	smg5	99	61.973	ENSNLEG00000012439	SMG5	91	76.905	Nomascus_leucogenys
ENSORLG00000016239	smg5	99	61.136	ENSMEUG00000012834	SMG5	50	57.559	Notamacropus_eugenii
ENSORLG00000016239	smg5	99	61.677	ENSOPRG00000009152	SMG5	50	58.011	Ochotona_princeps
ENSORLG00000016239	smg5	100	85.372	ENSONIG00000008632	smg5	100	84.725	Oreochromis_niloticus
ENSORLG00000016239	smg5	79	45.585	ENSOCUG00000023338	-	86	45.771	Oryctolagus_cuniculus
ENSORLG00000016239	smg5	98	62.408	ENSOCUG00000012886	SMG5	100	60.897	Oryctolagus_cuniculus
ENSORLG00000016239	smg5	100	98.828	ENSORLG00020013127	smg5	100	98.828	Oryzias_latipes_hni
ENSORLG00000016239	smg5	100	98.647	ENSORLG00015019014	smg5	100	98.647	Oryzias_latipes_hsok
ENSORLG00000016239	smg5	84	94.737	ENSOMEG00000021330	smg5	92	94.737	Oryzias_melastigma
ENSORLG00000016239	smg5	99	61.421	ENSOGAG00000004966	SMG5	99	60.000	Otolemur_garnettii
ENSORLG00000016239	smg5	86	51.332	ENSOARG00000011963	-	85	50.847	Ovis_aries
ENSORLG00000016239	smg5	99	61.948	ENSPPAG00000011996	SMG5	91	76.667	Pan_paniscus
ENSORLG00000016239	smg5	87	77.247	ENSPTRG00000049282	-	91	76.667	Pan_troglodytes
ENSORLG00000016239	smg5	99	61.948	ENSPTRG00000023925	SMG5	91	76.667	Pan_troglodytes
ENSORLG00000016239	smg5	100	75.982	ENSPKIG00000009402	smg5	100	75.313	Paramormyrops_kingsleyae
ENSORLG00000016239	smg5	98	64.867	ENSPSIG00000015198	SMG5	100	62.135	Pelodiscus_sinensis
ENSORLG00000016239	smg5	100	71.159	ENSPMGG00000010465	smg5	100	70.000	Periophthalmus_magnuspinnatus
ENSORLG00000016239	smg5	99	61.935	ENSPEMG00000001819	Smg5	99	60.252	Peromyscus_maniculatus_bairdii
ENSORLG00000016239	smg5	99	62.116	ENSPCIG00000018938	SMG5	50	59.381	Phascolarctos_cinereus
ENSORLG00000016239	smg5	100	85.142	ENSPFOG00000010191	smg5	100	84.821	Poecilia_formosa
ENSORLG00000016239	smg5	100	85.179	ENSPLAG00000009332	smg5	100	85.000	Poecilia_latipinna
ENSORLG00000016239	smg5	100	85.142	ENSPMEG00000014105	smg5	100	84.821	Poecilia_mexicana
ENSORLG00000016239	smg5	100	85.179	ENSPREG00000017713	smg5	100	85.089	Poecilia_reticulata
ENSORLG00000016239	smg5	99	62.063	ENSPPYG00000000723	SMG5	91	76.905	Pongo_abelii
ENSORLG00000016239	smg5	76	79.444	ENSPCAG00000008412	SMG5	87	74.359	Procavia_capensis
ENSORLG00000016239	smg5	99	61.664	ENSPCOG00000004741	SMG5	99	60.811	Propithecus_coquereli
ENSORLG00000016239	smg5	99	55.426	ENSPVAG00000016748	SMG5	91	65.952	Pteropus_vampyrus
ENSORLG00000016239	smg5	100	84.894	ENSPNYG00000013397	smg5	100	84.513	Pundamilia_nyererei
ENSORLG00000016239	smg5	100	76.178	ENSPNAG00000028363	smg5	100	76.203	Pygocentrus_nattereri
ENSORLG00000016239	smg5	99	62.063	ENSSBOG00000033339	SMG5	50	59.116	Saimiri_boliviensis_boliviensis
ENSORLG00000016239	smg5	75	35.043	ENSSHAG00000000561	-	86	36.562	Sarcophilus_harrisii
ENSORLG00000016239	smg5	53	36.493	ENSSHAG00000000935	-	79	37.500	Sarcophilus_harrisii
ENSORLG00000016239	smg5	73	40.976	ENSSHAG00000009572	-	79	40.976	Sarcophilus_harrisii
ENSORLG00000016239	smg5	98	61.426	ENSSHAG00000014163	SMG5	52	57.726	Sarcophilus_harrisii
ENSORLG00000016239	smg5	100	76.131	ENSSFOG00015024175	smg5	100	75.067	Scleropages_formosus
ENSORLG00000016239	smg5	100	84.431	ENSSMAG00000013059	smg5	100	84.164	Scophthalmus_maximus
ENSORLG00000016239	smg5	100	86.372	ENSSDUG00000007122	smg5	100	85.044	Seriola_dumerili
ENSORLG00000016239	smg5	100	86.158	ENSSLDG00000011418	smg5	100	85.714	Seriola_lalandi_dorsalis
ENSORLG00000016239	smg5	85	67.986	ENSSARG00000012484	SMG5	94	67.986	Sorex_araneus
ENSORLG00000016239	smg5	94	61.704	ENSSPUG00000002260	SMG5	100	59.925	Sphenodon_punctatus
ENSORLG00000016239	smg5	100	86.348	ENSSPAG00000014266	smg5	100	85.638	Stegastes_partitus
ENSORLG00000016239	smg5	99	48.061	ENSSSCG00000039308	-	89	59.845	Sus_scrofa
ENSORLG00000016239	smg5	99	61.883	ENSSSCG00000006490	-	90	77.381	Sus_scrofa
ENSORLG00000016239	smg5	99	64.982	ENSTGUG00000003748	-	99	61.896	Taeniopygia_guttata
ENSORLG00000016239	smg5	100	78.142	ENSTRUG00000012580	smg5	100	78.133	Takifugu_rubripes
ENSORLG00000016239	smg5	100	78.571	ENSTNIG00000010303	smg5	100	78.565	Tetraodon_nigroviridis
ENSORLG00000016239	smg5	53	84.236	ENSTBEG00000002777	SMG5	58	84.236	Tupaia_belangeri
ENSORLG00000016239	smg5	99	58.655	ENSTTRG00000001401	SMG5	99	56.643	Tursiops_truncatus
ENSORLG00000016239	smg5	92	73.671	ENSUMAG00000018041	SMG5	97	70.470	Ursus_maritimus
ENSORLG00000016239	smg5	92	71.782	ENSVPAG00000009446	SMG5	91	67.085	Vicugna_pacos
ENSORLG00000016239	smg5	79	54.525	ENSXETG00000033791	SMG5	97	53.551	Xenopus_tropicalis
ENSORLG00000016239	smg5	81	89.560	ENSXCOG00000004379	smg5	99	89.560	Xiphophorus_couchianus
ENSORLG00000016239	smg5	100	84.643	ENSXMAG00000013499	smg5	100	84.286	Xiphophorus_maculatus