EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000016455 (Gene tree)
Gene ID: 101171039
Gene Symbol: SMARCAL1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 14225 bases
Position: chr21:19987768-20001992
Accession: 101171039
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000020604	ResIII	PF04851.15	9.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000020605	SMARCAL1-201	6231	XM_023950843	ENSORLP00000020604	893 (aa)	XP_023806611	H2MPE5

Gene Model

Click here to download ENSORLG00000016455's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000016455's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000016455	SMARCAL1	96	51.023	ENSG00000138375	SMARCAL1	99	68.323	Homo_sapiens
ENSORLG00000016455	SMARCAL1	99	74.373	ENSAPOG00000020156	SMARCAL1	99	74.591	Acanthochromis_polyacanthus
ENSORLG00000016455	SMARCAL1	92	73.939	ENSACIG00000001500	smarcal1	97	73.939	Amphilophus_citrinellus
ENSORLG00000016455	SMARCAL1	98	75.417	ENSAOCG00000014266	SMARCAL1	99	75.417	Amphiprion_ocellaris
ENSORLG00000016455	SMARCAL1	99	74.348	ENSAPEG00000015861	SMARCAL1	99	74.348	Amphiprion_percula
ENSORLG00000016455	SMARCAL1	100	73.536	ENSATEG00000020624	SMARCAL1	100	73.536	Anabas_testudineus
ENSORLG00000016455	SMARCAL1	79	61.711	ENSAPLG00000009864	SMARCAL1	74	61.591	Anas_platyrhynchos
ENSORLG00000016455	SMARCAL1	79	62.535	ENSACAG00000004612	SMARCAL1	73	62.535	Anolis_carolinensis
ENSORLG00000016455	SMARCAL1	99	72.235	ENSACLG00000015990	SMARCAL1	99	72.928	Astatotilapia_calliptera
ENSORLG00000016455	SMARCAL1	100	65.304	ENSAMXG00000003350	smarcal1	99	65.304	Astyanax_mexicanus
ENSORLG00000016455	SMARCAL1	97	54.977	ENSCPBG00000013599	SMARCAL1	99	48.729	Chrysemys_picta_bellii
ENSORLG00000016455	SMARCAL1	77	49.060	ENSCING00000009308	-	100	49.060	Ciona_intestinalis
ENSORLG00000016455	SMARCAL1	97	71.091	ENSCSEG00000010785	SMARCAL1	99	71.091	Cynoglossus_semilaevis
ENSORLG00000016455	SMARCAL1	100	71.350	ENSCVAG00000018780	SMARCAL1	100	71.350	Cyprinodon_variegatus
ENSORLG00000016455	SMARCAL1	59	55.258	ENSEBUG00000011906	SMARCAL1	99	46.806	Eptatretus_burgeri
ENSORLG00000016455	SMARCAL1	78	74.395	ENSELUG00000010440	-	95	71.049	Esox_lucius
ENSORLG00000016455	SMARCAL1	77	63.165	ENSFALG00000003981	SMARCAL1	72	63.165	Ficedula_albicollis
ENSORLG00000016455	SMARCAL1	100	71.538	ENSFHEG00000008380	SMARCAL1	100	71.538	Fundulus_heteroclitus
ENSORLG00000016455	SMARCAL1	61	73.522	ENSGMOG00000010034	smarcal1	91	73.522	Gadus_morhua
ENSORLG00000016455	SMARCAL1	82	60.107	ENSGALG00000011475	RPL37A	76	60.107	Gallus_gallus
ENSORLG00000016455	SMARCAL1	87	80.561	ENSGACG00000006073	SMARCAL1	100	83.054	Gasterosteus_aculeatus
ENSORLG00000016455	SMARCAL1	92	64.253	ENSGAGG00000015660	SMARCAL1	99	64.253	Gopherus_agassizii
ENSORLG00000016455	SMARCAL1	99	72.376	ENSHBUG00000002973	smarcal1	99	72.486	Haplochromis_burtoni
ENSORLG00000016455	SMARCAL1	95	68.765	ENSHCOG00000017921	smarcal1	98	68.765	Hippocampus_comes
ENSORLG00000016455	SMARCAL1	97	75.629	ENSKMAG00000012023	SMARCAL1	99	75.973	Kryptolebias_marmoratus
ENSORLG00000016455	SMARCAL1	90	71.897	ENSLBEG00000003493	smarcal1	100	72.131	Labrus_bergylta
ENSORLG00000016455	SMARCAL1	92	72.236	ENSLBEG00000022915	smarcal1	99	72.236	Labrus_bergylta
ENSORLG00000016455	SMARCAL1	100	49.068	ENSLACG00000010974	SMARCAL1	99	49.226	Latimeria_chalumnae
ENSORLG00000016455	SMARCAL1	92	63.636	ENSLOCG00000009637	smarcal1	99	63.636	Lepisosteus_oculatus
ENSORLG00000016455	SMARCAL1	98	74.497	ENSMAMG00000000828	SMARCAL1	99	74.497	Mastacembelus_armatus
ENSORLG00000016455	SMARCAL1	99	72.124	ENSMZEG00005007660	SMARCAL1	99	72.818	Maylandia_zebra
ENSORLG00000016455	SMARCAL1	96	54.125	ENSMGAG00000011658	SMARCAL1	96	54.125	Meleagris_gallopavo
ENSORLG00000016455	SMARCAL1	92	70.510	ENSMMOG00000003842	smarcal1	94	70.510	Mola_mola
ENSORLG00000016455	SMARCAL1	97	50.849	ENSMODG00000015544	SMARCAL1	97	50.849	Monodelphis_domestica
ENSORLG00000016455	SMARCAL1	77	82.489	ENSNBRG00000016273	smarcal1	97	71.961	Neolamprologus_brichardi
ENSORLG00000016455	SMARCAL1	92	52.159	ENSMEUG00000004395	SMARCAL1	100	52.159	Notamacropus_eugenii
ENSORLG00000016455	SMARCAL1	99	73.000	ENSONIG00000009036	smarcal1	100	82.558	Oreochromis_niloticus
ENSORLG00000016455	SMARCAL1	100	98.320	ENSORLG00020001610	SMARCAL1	100	98.320	Oryzias_latipes_hni
ENSORLG00000016455	SMARCAL1	100	98.880	ENSORLG00015001865	SMARCAL1	100	98.880	Oryzias_latipes_hsok
ENSORLG00000016455	SMARCAL1	100	90.370	ENSOMEG00000001845	smarcal1	100	90.370	Oryzias_melastigma
ENSORLG00000016455	SMARCAL1	100	67.756	ENSPMGG00000019092	SMARCAL1	100	67.904	Periophthalmus_magnuspinnatus
ENSORLG00000016455	SMARCAL1	97	50.315	ENSPCIG00000022514	SMARCAL1	99	51.106	Phascolarctos_cinereus
ENSORLG00000016455	SMARCAL1	100	72.088	ENSPFOG00000000560	SMARCAL1	100	72.088	Poecilia_formosa
ENSORLG00000016455	SMARCAL1	100	72.088	ENSPMEG00000018146	SMARCAL1	100	72.088	Poecilia_mexicana
ENSORLG00000016455	SMARCAL1	60	86.343	ENSPREG00000009591	SMARCAL1	95	86.343	Poecilia_reticulata
ENSORLG00000016455	SMARCAL1	98	66.439	ENSPNAG00000014900	smarcal1	92	66.439	Pygocentrus_nattereri
ENSORLG00000016455	SMARCAL1	98	50.871	ENSSHAG00000013538	SMARCAL1	98	50.871	Sarcophilus_harrisii
ENSORLG00000016455	SMARCAL1	100	70.940	ENSSMAG00000010427	SMARCAL1	100	70.940	Scophthalmus_maximus
ENSORLG00000016455	SMARCAL1	97	73.282	ENSSDUG00000017470	SMARCAL1	96	74.140	Seriola_dumerili
ENSORLG00000016455	SMARCAL1	100	72.000	ENSSLDG00000007224	SMARCAL1	100	72.541	Seriola_lalandi_dorsalis
ENSORLG00000016455	SMARCAL1	85	61.204	ENSSPUG00000015369	SMARCAL1	78	61.204	Sphenodon_punctatus
ENSORLG00000016455	SMARCAL1	92	75.394	ENSSPAG00000003742	smarcal1	99	75.995	Stegastes_partitus
ENSORLG00000016455	SMARCAL1	77	57.164	ENSSSCG00000035501	SMARCAL1	76	57.164	Sus_scrofa
ENSORLG00000016455	SMARCAL1	77	61.584	ENSTGUG00000005079	SMARCAL1	99	61.584	Taeniopygia_guttata
ENSORLG00000016455	SMARCAL1	98	62.955	ENSTRUG00000010701	SMARCAL1	99	62.883	Takifugu_rubripes
ENSORLG00000016455	SMARCAL1	97	45.494	ENSTTRG00000009001	SMARCAL1	96	45.494	Tursiops_truncatus
ENSORLG00000016455	SMARCAL1	96	56.742	ENSXETG00000000465	smarcal1	97	56.742	Xenopus_tropicalis