EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000016555 (Gene tree)
Gene ID: 101163330
Gene Symbol: rab3db
Alias: -
Full Name: ras-related protein Rab-3D
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 15581 bases
Position: chr8:22627986-22643566
Accession: 101163330
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000004206	GTP_EFTU	PF00009.27	1.8e-06	1	1
ENSORLP00000004207	GTP_EFTU	PF00009.27	2e-06	1	1
ENSORLP00000004205	GTP_EFTU	PF00009.27	2.1e-06	1	1
ENSORLP00000045807	GTP_EFTU	PF00009.27	2.1e-06	1	1
ENSORLP00000005859	GTP_EFTU	PF00009.27	2.1e-06	1	1
ENSORLP00000034021	GTP_EFTU	PF00009.27	2.1e-06	1	1
ENSORLP00000020724	GTP_EFTU	PF00009.27	2.3e-06	1	1
ENSORLP00000026379	GTP_EFTU	PF00009.27	2.6e-06	1	1
ENSORLP00000004206	MMR_HSR1	PF01926.23	3e-05	1	1
ENSORLP00000020724	MMR_HSR1	PF01926.23	3.3e-05	1	1
ENSORLP00000004207	MMR_HSR1	PF01926.23	3.4e-05	1	1
ENSORLP00000005859	MMR_HSR1	PF01926.23	3.4e-05	1	1
ENSORLP00000045807	MMR_HSR1	PF01926.23	3.4e-05	1	1
ENSORLP00000034021	MMR_HSR1	PF01926.23	3.4e-05	1	1
ENSORLP00000026379	MMR_HSR1	PF01926.23	3.8e-05	1	1
ENSORLP00000004205	MMR_HSR1	PF01926.23	3.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000005860	-	651	-	ENSORLP00000005859	216 (aa)	-	H2LIM9
ENSORLT00000028937	-	654	-	ENSORLP00000034021	217 (aa)	-	-
ENSORLT00000029801	-	651	-	ENSORLP00000045807	216 (aa)	-	-
ENSORLT00000020725	-	666	-	ENSORLP00000020724	221 (aa)	-	H2MPR1
ENSORLT00000004207	-	627	-	ENSORLP00000004206	208 (aa)	-	H2LE39
ENSORLT00000004206	-	642	-	ENSORLP00000004205	213 (aa)	-	H2LE38
ENSORLT00000028243	-	690	XM_023957759	ENSORLP00000026379	229 (aa)	XP_023813527	-
ENSORLT00000004208	-	648	-	ENSORLP00000004207	215 (aa)	-	H2LE40

Gene Model

Click here to download ENSORLG00000016555's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000016555's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000016555	rab3db	82	31.429	ENSORLG00000003681	rheb	94	31.429
ENSORLG00000016555	rab3db	84	44.382	ENSORLG00000001098	si:dkey-16l2.16	84	44.382
ENSORLG00000016555	rab3db	91	34.171	ENSORLG00000025098	si:dkey-13a21.4	84	36.416
ENSORLG00000016555	rab3db	88	31.937	ENSORLG00000017806	rab9a	95	31.937
ENSORLG00000016555	rab3db	74	30.128	ENSORLG00000003119	rab34b	57	30.128
ENSORLG00000016555	rab3db	83	44.318	ENSORLG00000028885	rab35b	88	44.068
ENSORLG00000016555	rab3db	97	37.379	ENSORLG00000012158	rab25a	91	38.220
ENSORLG00000016555	rab3db	81	35.260	ENSORLG00000006628	-	82	35.838
ENSORLG00000016555	rab3db	77	43.713	ENSORLG00000008345	-	78	43.713
ENSORLG00000016555	rab3db	77	41.718	ENSORLG00000014099	si:dkey-34d22.5	74	41.718
ENSORLG00000016555	rab3db	93	38.579	ENSORLG00000029921	-	87	40.107
ENSORLG00000016555	rab3db	81	38.690	ENSORLG00000013938	rab11bb	79	38.372
ENSORLG00000016555	rab3db	77	34.337	ENSORLG00000006405	rab9b	79	34.337
ENSORLG00000016555	rab3db	79	31.138	ENSORLG00000018119	si:ch73-116o1.2	79	31.138
ENSORLG00000016555	rab3db	96	44.059	ENSORLG00000028104	rab1ab	86	46.821
ENSORLG00000016555	rab3db	75	33.537	ENSORLG00000025819	-	85	33.537
ENSORLG00000016555	rab3db	77	33.951	ENSORLG00000024443	zgc:55558	86	33.951
ENSORLG00000016555	rab3db	79	43.713	ENSORLG00000001850	RAB39B	78	43.713
ENSORLG00000016555	rab3db	74	38.272	ENSORLG00000030109	rab33ba	69	38.272
ENSORLG00000016555	rab3db	78	30.909	ENSORLG00000004394	rab34a	62	30.909
ENSORLG00000016555	rab3db	89	34.343	ENSORLG00000029090	-	96	34.343
ENSORLG00000016555	rab3db	94	37.255	ENSORLG00000000937	-	76	42.683
ENSORLG00000016555	rab3db	87	30.769	ENSORLG00000026940	rasl11a	77	30.244
ENSORLG00000016555	rab3db	75	43.949	ENSORLG00000027669	RAB41	74	43.949
ENSORLG00000016555	rab3db	97	37.788	ENSORLG00000022335	rab42a	80	41.714
ENSORLG00000016555	rab3db	81	38.690	ENSORLG00000015284	-	57	38.372
ENSORLG00000016555	rab3db	90	34.826	ENSORLG00000018331	RAB11A	93	34.826
ENSORLG00000016555	rab3db	81	42.262	ENSORLG00000029812	rab30	83	42.105
ENSORLG00000016555	rab3db	93	47.208	ENSORLG00000003902	rab12	79	47.938
ENSORLG00000016555	rab3db	87	40.212	ENSORLG00000024558	-	80	40.426
ENSORLG00000016555	rab3db	84	36.757	ENSORLG00000027892	RAB29	90	36.757
ENSORLG00000016555	rab3db	94	32.487	ENSORLG00000025519	rras	88	35.057
ENSORLG00000016555	rab3db	92	36.923	ENSORLG00000012261	rab5aa	89	36.923
ENSORLG00000016555	rab3db	97	41.827	ENSORLG00000009609	rab18b	83	46.199
ENSORLG00000016555	rab3db	81	30.337	ENSORLG00000001134	dnajc27	65	30.337
ENSORLG00000016555	rab3db	94	40.513	ENSORLG00000016290	rab6bb	90	41.573
ENSORLG00000016555	rab3db	73	38.961	ENSORLG00000030642	zgc:101559	69	37.888
ENSORLG00000016555	rab3db	95	35.922	ENSORLG00000016126	rab11al	85	36.957
ENSORLG00000016555	rab3db	98	37.736	ENSORLG00000007406	rab14	88	39.153
ENSORLG00000016555	rab3db	82	35.500	ENSORLG00000030566	rab33a	69	36.316
ENSORLG00000016555	rab3db	72	36.774	ENSORLG00000002071	-	64	36.774
ENSORLG00000016555	rab3db	83	34.104	ENSORLG00000001566	rhebl1	91	34.104
ENSORLG00000016555	rab3db	92	41.885	ENSORLG00000000602	zgc:171927	86	42.473
ENSORLG00000016555	rab3db	84	43.678	ENSORLG00000024116	RAB15	84	43.678
ENSORLG00000016555	rab3db	96	39.524	ENSORLG00000010846	rab15	79	45.143
ENSORLG00000016555	rab3db	83	47.727	ENSORLG00000025395	-	88	47.727
ENSORLG00000016555	rab3db	81	38.690	ENSORLG00000015307	rab11ba	79	38.372
ENSORLG00000016555	rab3db	100	39.631	ENSORLG00000026197	rab6a	92	40.404
ENSORLG00000016555	rab3db	95	39.234	ENSORLG00000013432	rab2a	89	39.683
ENSORLG00000016555	rab3db	88	39.791	ENSORLG00000016135	rab25b	95	39.247
ENSORLG00000016555	rab3db	96	44.776	ENSORLG00000021846	-	97	42.211
ENSORLG00000016555	rab3db	81	38.286	ENSORLG00000003882	rab5c	80	38.506
ENSORLG00000016555	rab3db	82	43.860	ENSORLG00000004624	rab18a	88	42.703
ENSORLG00000016555	rab3db	88	32.787	ENSORLG00000010115	rab23	91	33.690
ENSORLG00000016555	rab3db	76	32.704	ENSORLG00000024102	kras	88	32.143
ENSORLG00000016555	rab3db	81	32.948	ENSORLG00000018912	hrasb	90	32.948
ENSORLG00000016555	rab3db	76	36.420	ENSORLG00000001351	-	78	36.420

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000016555	rab3db	99	71.770	ENSACAG00000016810	RAB3D	96	71.101	Anolis_carolinensis
ENSORLG00000016555	rab3db	71	81.081	ENSDARG00000018107	rab3da	95	77.987	Danio_rerio
ENSORLG00000016555	rab3db	99	68.900	ENSHCOG00000017123	-	88	73.016	Hippocampus_comes
ENSORLG00000016555	rab3db	99	68.421	ENSKMAG00000018973	-	100	66.368	Kryptolebias_marmoratus
ENSORLG00000016555	rab3db	100	64.091	ENSOCUG00000025381	RAB3D	89	68.205	Oryctolagus_cuniculus
ENSORLG00000016555	rab3db	99	99.545	ENSORLG00020021663	rab3db	100	99.545	Oryzias_latipes_hni
ENSORLG00000016555	rab3db	99	98.636	ENSORLG00015014594	rab3db	100	98.636	Oryzias_latipes_hsok
ENSORLG00000016555	rab3db	99	75.481	ENSPKIG00000009021	rab3db	94	74.038	Paramormyrops_kingsleyae
ENSORLG00000016555	rab3db	99	69.378	ENSPCIG00000017722	RAB3D	100	67.580	Phascolarctos_cinereus
ENSORLG00000016555	rab3db	99	71.292	ENSSHAG00000007153	RAB3D	99	65.351	Sarcophilus_harrisii