EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000017158 (Gene tree)
Gene ID: 101174750
Gene Symbol: snrnp70
Alias: -
Full Name: small nuclear ribonucleoprotein U1 subunit 70
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 11474 bases
Position: chr8:24781862-24793335
Accession: 101174750
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000021468	RRM_1	PF00076.22	2.5e-19	1	1
ENSORLP00000026728	RRM_1	PF00076.22	2.7e-19	1	1
ENSORLP00000021468	U1snRNP70_N	PF12220.8	4.4e-25	1	1
ENSORLP00000026728	U1snRNP70_N	PF12220.8	4.7e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000021469	-	1347	-	ENSORLP00000021468	448 (aa)	-	H2MRT5
ENSORLT00000028973	-	2081	XM_004071876	ENSORLP00000026728	469 (aa)	XP_004071924	UPI0002A481BC

Gene Model

Click here to download ENSORLG00000017158's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000017158's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000017158	snrnp70	100	82.590	ENSACIG00000017909	snrnp70	100	82.590	Amphilophus_citrinellus
ENSORLG00000017158	snrnp70	100	79.583	ENSACLG00000011144	snrnp70	100	74.322	Astatotilapia_calliptera
ENSORLG00000017158	snrnp70	57	46.642	WBGene00004390	rnp-7	58	53.093	Caenorhabditis_elegans
ENSORLG00000017158	snrnp70	100	75.053	ENSFHEG00000010298	snrnp70	100	77.311	Fundulus_heteroclitus
ENSORLG00000017158	snrnp70	55	76.923	ENSGGOG00000008245	SNRNP70	99	89.634	Gorilla_gorilla
ENSORLG00000017158	snrnp70	100	81.568	ENSHBUG00000018856	snrnp70	100	77.070	Haplochromis_burtoni
ENSORLG00000017158	snrnp70	100	80.842	ENSMAMG00000004556	snrnp70	100	80.421	Mastacembelus_armatus
ENSORLG00000017158	snrnp70	100	80.550	ENSMZEG00005022849	snrnp70	100	75.212	Maylandia_zebra
ENSORLG00000017158	snrnp70	100	66.109	ENSMMOG00000005467	snrnp70	100	62.705	Mola_mola
ENSORLG00000017158	snrnp70	75	86.571	ENSMALG00000002275	snrnp70	89	82.174	Monopterus_albus
ENSORLG00000017158	snrnp70	100	98.721	ENSORLG00015010817	snrnp70	100	98.721	Oryzias_latipes_hsok
ENSORLG00000017158	snrnp70	100	94.030	ENSOMEG00000013002	snrnp70	100	92.537	Oryzias_melastigma
ENSORLG00000017158	snrnp70	100	76.008	ENSPFOG00000016671	snrnp70	100	77.590	Poecilia_formosa
ENSORLG00000017158	snrnp70	100	75.796	ENSPLAG00000005912	snrnp70	100	77.378	Poecilia_latipinna
ENSORLG00000017158	snrnp70	100	76.008	ENSPMEG00000008496	snrnp70	100	77.590	Poecilia_mexicana
ENSORLG00000017158	snrnp70	100	75.796	ENSPREG00000005486	snrnp70	100	77.378	Poecilia_reticulata
ENSORLG00000017158	snrnp70	100	81.818	ENSPNYG00000003258	snrnp70	100	77.331	Pundamilia_nyererei
ENSORLG00000017158	snrnp70	52	92.713	ENSSFOG00015004562	snrnp70	61	82.517	Scleropages_formosus
ENSORLG00000017158	snrnp70	78	97.409	ENSSMAG00000013978	snrnp70	100	75.813	Scophthalmus_maximus
ENSORLG00000017158	snrnp70	100	76.483	ENSTRUG00000009202	snrnp70	100	75.424	Takifugu_rubripes