EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000017189 (Gene tree)
Gene ID: 101175361
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 21156 bases
Position: chr23:22242875-22264030
Accession: 101175361
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000021507	Upf2	PF04050.14	6.1e-33	1	1
ENSORLP00000021507	MIF4G	PF02854.19	2.5e-74	1	2
ENSORLP00000021507	MIF4G	PF02854.19	2.5e-74	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000021508	UPF2-201	5248	XM_011491315	ENSORLP00000021507	1275 (aa)	XP_011489617	H2MRX3

Gene Model

Click here to download ENSORLG00000017189's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03013	RNA transport	KEGG
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000017189's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000017189	UPF2	100	82.215	ENSG00000151461	UPF2	100	81.634	Homo_sapiens
ENSORLG00000017189	UPF2	99	87.451	ENSAPOG00000015837	UPF2	100	87.529	Acanthochromis_polyacanthus
ENSORLG00000017189	UPF2	100	82.137	ENSAMEG00000004586	UPF2	100	81.634	Ailuropoda_melanoleuca
ENSORLG00000017189	UPF2	99	92.796	ENSACIG00000018078	UPF2	100	92.639	Amphilophus_citrinellus
ENSORLG00000017189	UPF2	100	93.500	ENSAOCG00000016766	UPF2	100	93.265	Amphiprion_ocellaris
ENSORLG00000017189	UPF2	100	93.579	ENSAPEG00000019084	UPF2	100	93.344	Amphiprion_percula
ENSORLG00000017189	UPF2	100	92.963	ENSATEG00000021677	UPF2	99	92.729	Anabas_testudineus
ENSORLG00000017189	UPF2	100	78.488	ENSAPLG00000010287	UPF2	90	82.975	Anas_platyrhynchos
ENSORLG00000017189	UPF2	100	82.293	ENSACAG00000009259	UPF2	100	81.776	Anolis_carolinensis
ENSORLG00000017189	UPF2	91	78.767	ENSANAG00000028451	UPF2	93	77.957	Aotus_nancymaae
ENSORLG00000017189	UPF2	100	92.729	ENSACLG00000012696	UPF2	100	92.572	Astatotilapia_calliptera
ENSORLG00000017189	UPF2	99	88.056	ENSAMXG00000013700	UPF2	99	87.822	Astyanax_mexicanus
ENSORLG00000017189	UPF2	100	82.293	ENSBTAG00000000288	UPF2	100	81.245	Bos_taurus
ENSORLG00000017189	UPF2	100	81.357	ENSCJAG00000020685	UPF2	100	81.026	Callithrix_jacchus
ENSORLG00000017189	UPF2	100	82.215	ENSCAFG00000004839	UPF2	100	81.712	Canis_familiaris
ENSORLG00000017189	UPF2	95	85.354	ENSCAFG00020005882	UPF2	100	85.075	Canis_lupus_dingo
ENSORLG00000017189	UPF2	100	82.293	ENSCHIG00000020359	UPF2	100	81.245	Capra_hircus
ENSORLG00000017189	UPF2	100	82.293	ENSTSYG00000000935	UPF2	100	81.245	Carlito_syrichta
ENSORLG00000017189	UPF2	91	73.612	ENSCAPG00000016658	UPF2	95	73.339	Cavia_aperea
ENSORLG00000017189	UPF2	99	79.009	ENSCPOG00000008809	UPF2	92	82.158	Cavia_porcellus
ENSORLG00000017189	UPF2	100	75.195	ENSCCAG00000035991	UPF2	100	74.883	Cebus_capucinus
ENSORLG00000017189	UPF2	100	81.995	ENSCATG00000032679	UPF2	100	81.260	Cercocebus_atys
ENSORLG00000017189	UPF2	100	81.030	ENSCLAG00000011434	UPF2	100	81.323	Chinchilla_lanigera
ENSORLG00000017189	UPF2	100	81.995	ENSCSAG00000013372	UPF2	100	81.260	Chlorocebus_sabaeus
ENSORLG00000017189	UPF2	79	89.579	ENSCHOG00000000422	UPF2	81	88.248	Choloepus_hoffmanni
ENSORLG00000017189	UPF2	99	80.971	ENSCPBG00000027823	UPF2	93	85.204	Chrysemys_picta_bellii
ENSORLG00000017189	UPF2	79	48.922	ENSCSAVG00000007772	-	99	48.075	Ciona_savignyi
ENSORLG00000017189	UPF2	99	77.149	ENSCANG00000040396	UPF2	100	76.809	Colobus_angolensis_palliatus
ENSORLG00000017189	UPF2	100	81.669	ENSCGRG00001019347	Upf2	100	80.934	Cricetulus_griseus_chok1gshd
ENSORLG00000017189	UPF2	100	81.669	ENSCGRG00000017993	Upf2	100	80.934	Cricetulus_griseus_crigri
ENSORLG00000017189	UPF2	99	83.725	ENSCSEG00000003520	UPF2	99	84.119	Cynoglossus_semilaevis
ENSORLG00000017189	UPF2	99	91.798	ENSCVAG00000006167	UPF2	100	91.483	Cyprinodon_variegatus
ENSORLG00000017189	UPF2	100	81.903	ENSDNOG00000018160	UPF2	100	81.323	Dasypus_novemcinctus
ENSORLG00000017189	UPF2	100	81.669	ENSDORG00000002478	Upf2	100	80.856	Dipodomys_ordii
ENSORLG00000017189	UPF2	73	93.431	ENSETEG00000011583	-	62	93.182	Echinops_telfairi
ENSORLG00000017189	UPF2	64	72.848	ENSEBUG00000012448	-	87	72.848	Eptatretus_burgeri
ENSORLG00000017189	UPF2	100	80.952	ENSEASG00005019274	UPF2	100	81.439	Equus_asinus_asinus
ENSORLG00000017189	UPF2	100	80.952	ENSECAG00000017022	UPF2	100	81.089	Equus_caballus
ENSORLG00000017189	UPF2	82	74.295	ENSEEUG00000007819	UPF2	74	74.799	Erinaceus_europaeus
ENSORLG00000017189	UPF2	99	88.698	ENSELUG00000012014	UPF2	100	89.010	Esox_lucius
ENSORLG00000017189	UPF2	100	84.153	ENSFCAG00000005785	UPF2	100	81.790	Felis_catus
ENSORLG00000017189	UPF2	100	83.255	ENSFALG00000001889	UPF2	98	83.022	Ficedula_albicollis
ENSORLG00000017189	UPF2	100	80.530	ENSFDAG00000014348	UPF2	100	81.089	Fukomys_damarensis
ENSORLG00000017189	UPF2	99	92.101	ENSFHEG00000009826	UPF2	98	92.903	Fundulus_heteroclitus
ENSORLG00000017189	UPF2	91	88.707	ENSGMOG00000005557	UPF2	100	86.906	Gadus_morhua
ENSORLG00000017189	UPF2	100	83.229	ENSGALG00000033772	UPF2	100	83.113	Gallus_gallus
ENSORLG00000017189	UPF2	100	91.386	ENSGAFG00000020867	UPF2	100	91.229	Gambusia_affinis
ENSORLG00000017189	UPF2	99	89.531	ENSGACG00000001080	UPF2	100	89.922	Gasterosteus_aculeatus
ENSORLG00000017189	UPF2	100	82.358	ENSGAGG00000002700	UPF2	100	81.854	Gopherus_agassizii
ENSORLG00000017189	UPF2	100	82.215	ENSGGOG00000001479	UPF2	100	81.634	Gorilla_gorilla
ENSORLG00000017189	UPF2	100	92.572	ENSHBUG00000004249	UPF2	100	92.561	Haplochromis_burtoni
ENSORLG00000017189	UPF2	99	72.088	ENSHGLG00000003822	-	99	71.540	Heterocephalus_glaber_female
ENSORLG00000017189	UPF2	100	80.562	ENSHGLG00000015176	-	100	80.296	Heterocephalus_glaber_female
ENSORLG00000017189	UPF2	99	78.108	ENSHGLG00100010036	UPF2	93	81.138	Heterocephalus_glaber_male
ENSORLG00000017189	UPF2	100	90.094	ENSHCOG00000004025	UPF2	99	89.392	Hippocampus_comes
ENSORLG00000017189	UPF2	100	87.305	ENSIPUG00000015524	UPF2	100	87.072	Ictalurus_punctatus
ENSORLG00000017189	UPF2	100	81.669	ENSSTOG00000013075	UPF2	100	81.167	Ictidomys_tridecemlineatus
ENSORLG00000017189	UPF2	100	78.349	ENSJJAG00000004913	Upf2	100	80.078	Jaculus_jaculus
ENSORLG00000017189	UPF2	99	92.120	ENSKMAG00000001071	UPF2	98	92.915	Kryptolebias_marmoratus
ENSORLG00000017189	UPF2	100	92.103	ENSLBEG00000016394	-	99	91.556	Labrus_bergylta
ENSORLG00000017189	UPF2	80	89.324	ENSLBEG00000000728	-	94	89.237	Labrus_bergylta
ENSORLG00000017189	UPF2	91	77.882	ENSLACG00000015945	UPF2	99	76.246	Latimeria_chalumnae
ENSORLG00000017189	UPF2	99	86.761	ENSLOCG00000015698	UPF2	99	86.604	Lepisosteus_oculatus
ENSORLG00000017189	UPF2	100	81.995	ENSMFAG00000043865	UPF2	100	81.260	Macaca_fascicularis
ENSORLG00000017189	UPF2	100	81.995	ENSMMUG00000008241	UPF2	100	81.260	Macaca_mulatta
ENSORLG00000017189	UPF2	80	82.927	ENSMNEG00000008062	UPF2	99	81.951	Macaca_nemestrina
ENSORLG00000017189	UPF2	99	80.328	ENSMLEG00000036120	UPF2	100	79.517	Mandrillus_leucophaeus
ENSORLG00000017189	UPF2	100	92.494	ENSMAMG00000018276	UPF2	100	92.416	Mastacembelus_armatus
ENSORLG00000017189	UPF2	100	92.729	ENSMZEG00005021595	UPF2	100	92.572	Maylandia_zebra
ENSORLG00000017189	UPF2	99	82.602	ENSMGAG00000004573	UPF2	99	82.486	Meleagris_gallopavo
ENSORLG00000017189	UPF2	100	79.641	ENSMAUG00000016512	Upf2	100	78.833	Mesocricetus_auratus
ENSORLG00000017189	UPF2	95	84.848	ENSMICG00000001716	UPF2	99	84.577	Microcebus_murinus
ENSORLG00000017189	UPF2	100	80.562	ENSMOCG00000008263	Upf2	100	81.089	Microtus_ochrogaster
ENSORLG00000017189	UPF2	99	87.216	ENSMMOG00000006528	UPF2	100	88.157	Mola_mola
ENSORLG00000017189	UPF2	100	79.719	ENSMODG00000016794	UPF2	100	81.712	Monodelphis_domestica
ENSORLG00000017189	UPF2	99	91.059	ENSMALG00000002663	UPF2	100	90.824	Monopterus_albus
ENSORLG00000017189	UPF2	100	81.499	MGP_CAROLIEiJ_G0023157	Upf2	99	83.550	Mus_caroli
ENSORLG00000017189	UPF2	100	81.889	ENSMUSG00000043241	Upf2	99	82.772	Mus_musculus
ENSORLG00000017189	UPF2	100	81.967	MGP_PahariEiJ_G0019217	Upf2	100	82.772	Mus_pahari
ENSORLG00000017189	UPF2	100	82.123	MGP_SPRETEiJ_G0024075	Upf2	100	82.772	Mus_spretus
ENSORLG00000017189	UPF2	100	81.825	ENSMPUG00000001064	UPF2	100	81.634	Mustela_putorius_furo
ENSORLG00000017189	UPF2	99	81.669	ENSMLUG00000000228	UPF2	100	81.197	Myotis_lucifugus
ENSORLG00000017189	UPF2	100	92.729	ENSNBRG00000013629	UPF2	100	92.572	Neolamprologus_brichardi
ENSORLG00000017189	UPF2	100	81.917	ENSNLEG00000012058	UPF2	100	81.182	Nomascus_leucogenys
ENSORLG00000017189	UPF2	72	92.958	ENSOPRG00000006801	-	73	92.958	Ochotona_princeps
ENSORLG00000017189	UPF2	100	80.841	ENSODEG00000001290	UPF2	100	81.167	Octodon_degus
ENSORLG00000017189	UPF2	100	92.416	ENSONIG00000017991	UPF2	100	92.260	Oreochromis_niloticus
ENSORLG00000017189	UPF2	99	79.767	ENSOCUG00000006230	UPF2	100	80.465	Oryctolagus_cuniculus
ENSORLG00000017189	UPF2	100	99.686	ENSORLG00020005969	UPF2	100	99.686	Oryzias_latipes_hni
ENSORLG00000017189	UPF2	100	99.686	ENSORLG00015005713	UPF2	100	99.686	Oryzias_latipes_hsok
ENSORLG00000017189	UPF2	99	93.401	ENSOMEG00000023420	UPF2	98	93.401	Oryzias_melastigma
ENSORLG00000017189	UPF2	100	82.293	ENSOGAG00000005796	UPF2	100	81.401	Otolemur_garnettii
ENSORLG00000017189	UPF2	100	82.165	ENSOARG00000014587	UPF2	100	81.119	Ovis_aries
ENSORLG00000017189	UPF2	99	79.922	ENSPPAG00000037953	UPF2	100	79.423	Pan_paniscus
ENSORLG00000017189	UPF2	100	82.293	ENSPPRG00000000690	UPF2	100	81.790	Panthera_pardus
ENSORLG00000017189	UPF2	100	82.293	ENSPTIG00000008867	UPF2	100	81.790	Panthera_tigris_altaica
ENSORLG00000017189	UPF2	100	82.215	ENSPTRG00000002291	UPF2	100	81.634	Pan_troglodytes
ENSORLG00000017189	UPF2	100	81.917	ENSPANG00000023399	UPF2	100	81.182	Papio_anubis
ENSORLG00000017189	UPF2	100	86.817	ENSPKIG00000025502	UPF2	100	86.739	Paramormyrops_kingsleyae
ENSORLG00000017189	UPF2	59	81.638	ENSPSIG00000015158	UPF2	95	80.978	Pelodiscus_sinensis
ENSORLG00000017189	UPF2	99	88.531	ENSPMGG00000005259	UPF2	100	89.238	Periophthalmus_magnuspinnatus
ENSORLG00000017189	UPF2	93	74.493	ENSPEMG00000015731	Upf2	99	73.333	Peromyscus_maniculatus_bairdii
ENSORLG00000017189	UPF2	100	81.946	ENSPCIG00000006656	UPF2	100	81.712	Phascolarctos_cinereus
ENSORLG00000017189	UPF2	100	92.013	ENSPFOG00000017118	UPF2	100	91.778	Poecilia_formosa
ENSORLG00000017189	UPF2	100	92.091	ENSPLAG00000005094	UPF2	100	91.856	Poecilia_latipinna
ENSORLG00000017189	UPF2	100	92.091	ENSPMEG00000017009	UPF2	100	91.934	Poecilia_mexicana
ENSORLG00000017189	UPF2	99	90.902	ENSPREG00000021880	UPF2	100	90.510	Poecilia_reticulata
ENSORLG00000017189	UPF2	66	84.142	ENSPPYG00000002089	-	100	83.491	Pongo_abelii
ENSORLG00000017189	UPF2	100	69.883	ENSPCAG00000000684	UPF2	86	74.387	Procavia_capensis
ENSORLG00000017189	UPF2	99	79.219	ENSPCOG00000021656	UPF2	100	78.566	Propithecus_coquereli
ENSORLG00000017189	UPF2	100	75.760	ENSPVAG00000017286	UPF2	100	75.272	Pteropus_vampyrus
ENSORLG00000017189	UPF2	99	90.133	ENSPNYG00000017096	UPF2	100	89.977	Pundamilia_nyererei
ENSORLG00000017189	UPF2	100	88.534	ENSPNAG00000009357	UPF2	100	88.378	Pygocentrus_nattereri
ENSORLG00000017189	UPF2	99	77.769	ENSRNOG00000023593	Upf2	100	92.222	Rattus_norvegicus
ENSORLG00000017189	UPF2	99	80.938	ENSRBIG00000037780	UPF2	100	80.203	Rhinopithecus_bieti
ENSORLG00000017189	UPF2	100	81.917	ENSRROG00000043547	UPF2	100	81.182	Rhinopithecus_roxellana
ENSORLG00000017189	UPF2	100	81.279	ENSSBOG00000020012	UPF2	100	80.949	Saimiri_boliviensis_boliviensis
ENSORLG00000017189	UPF2	100	85.625	ENSSFOG00015023788	upf2	100	85.547	Scleropages_formosus
ENSORLG00000017189	UPF2	90	91.847	ENSSMAG00000007637	UPF2	100	89.899	Scophthalmus_maximus
ENSORLG00000017189	UPF2	100	93.657	ENSSDUG00000017244	UPF2	99	93.109	Seriola_dumerili
ENSORLG00000017189	UPF2	79	93.571	ENSSLDG00000016866	UPF2	100	90.039	Seriola_lalandi_dorsalis
ENSORLG00000017189	UPF2	100	78.861	ENSSARG00000008615	UPF2	100	80.623	Sorex_araneus
ENSORLG00000017189	UPF2	99	80.359	ENSSPUG00000014544	UPF2	99	79.891	Sphenodon_punctatus
ENSORLG00000017189	UPF2	68	84.036	ENSSSCG00000011117	-	99	83.409	Sus_scrofa
ENSORLG00000017189	UPF2	99	83.020	ENSTGUG00000002163	-	100	82.826	Taeniopygia_guttata
ENSORLG00000017189	UPF2	100	90.211	ENSTRUG00000007519	UPF2	99	89.977	Takifugu_rubripes
ENSORLG00000017189	UPF2	100	87.872	ENSTNIG00000004453	UPF2	100	87.715	Tetraodon_nigroviridis
ENSORLG00000017189	UPF2	93	73.636	ENSTBEG00000012679	UPF2	93	73.953	Tupaia_belangeri
ENSORLG00000017189	UPF2	100	81.030	ENSTTRG00000016388	UPF2	100	81.012	Tursiops_truncatus
ENSORLG00000017189	UPF2	87	92.135	ENSUAMG00000023560	UPF2	98	92.135	Ursus_americanus
ENSORLG00000017189	UPF2	100	82.215	ENSUMAG00000012953	UPF2	95	81.712	Ursus_maritimus
ENSORLG00000017189	UPF2	82	90.323	ENSVPAG00000006763	UPF2	85	90.323	Vicugna_pacos
ENSORLG00000017189	UPF2	100	82.215	ENSVVUG00000006166	UPF2	100	81.712	Vulpes_vulpes
ENSORLG00000017189	UPF2	100	79.267	ENSXETG00000033103	UPF2	91	84.052	Xenopus_tropicalis
ENSORLG00000017189	UPF2	99	91.686	ENSXCOG00000011604	UPF2	100	91.451	Xiphophorus_couchianus
ENSORLG00000017189	UPF2	100	91.699	ENSXMAG00000017209	UPF2	100	91.464	Xiphophorus_maculatus