EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000017213 (Gene tree)
Gene ID: 101163131
Gene Symbol: xrn2
Alias: -
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 29530 bases
Position: chr24:16195072-16224601
Accession: 101163131
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000035212	XRN_N	PF03159.18	2.7e-101	1	1
ENSORLP00000021551	XRN_N	PF03159.18	3.1e-101	1	1
ENSORLP00000021547	XRN_N	PF03159.18	3.2e-101	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000021552	-	5957	-	ENSORLP00000021551	961 (aa)	-	H2MS17
ENSORLT00000047057	-	7362	-	ENSORLP00000035212	892 (aa)	-	-
ENSORLT00000021548	-	5930	XM_004083745	ENSORLP00000021547	972 (aa)	XP_004083793	H2MS13

Gene Model

Click here to download ENSORLG00000017213's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03008	Ribosome biogenesis in eukaryotes	KEGG
ola03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000017213's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000017213	xrn2	97	74.942	ENSG00000088930	XRN2	98	70.301	Homo_sapiens
ENSORLG00000017213	xrn2	99	86.735	ENSAPOG00000009818	xrn2	98	85.104	Acanthochromis_polyacanthus
ENSORLG00000017213	xrn2	97	75.058	ENSAMEG00000012581	XRN2	98	70.405	Ailuropoda_melanoleuca
ENSORLG00000017213	xrn2	97	82.106	ENSACIG00000015047	xrn2	95	86.882	Amphilophus_citrinellus
ENSORLG00000017213	xrn2	99	87.982	ENSAOCG00000023632	xrn2	98	86.458	Amphiprion_ocellaris
ENSORLG00000017213	xrn2	99	87.868	ENSAPEG00000014871	xrn2	98	86.354	Amphiprion_percula
ENSORLG00000017213	xrn2	99	87.302	ENSATEG00000001273	xrn2	99	85.282	Anabas_testudineus
ENSORLG00000017213	xrn2	94	74.286	ENSAPLG00000013869	XRN2	96	70.000	Anas_platyrhynchos
ENSORLG00000017213	xrn2	96	75.635	ENSACAG00000005565	XRN2	100	70.183	Anolis_carolinensis
ENSORLG00000017213	xrn2	97	75.173	ENSANAG00000020126	XRN2	98	70.405	Aotus_nancymaae
ENSORLG00000017213	xrn2	98	85.829	ENSACLG00000010522	xrn2	98	86.290	Astatotilapia_calliptera
ENSORLG00000017213	xrn2	96	84.120	ENSAMXG00000018301	xrn2	98	80.352	Astyanax_mexicanus
ENSORLG00000017213	xrn2	97	74.480	ENSBTAG00000011304	XRN2	98	69.886	Bos_taurus
ENSORLG00000017213	xrn2	93	54.353	WBGene00006964	xrn-2	97	50.920	Caenorhabditis_elegans
ENSORLG00000017213	xrn2	97	75.058	ENSCJAG00000005611	XRN2	98	70.509	Callithrix_jacchus
ENSORLG00000017213	xrn2	97	75.058	ENSCAFG00000005185	XRN2	98	70.405	Canis_familiaris
ENSORLG00000017213	xrn2	97	75.058	ENSCAFG00020027479	XRN2	98	70.405	Canis_lupus_dingo
ENSORLG00000017213	xrn2	97	74.480	ENSCHIG00000006921	XRN2	98	69.886	Capra_hircus
ENSORLG00000017213	xrn2	97	74.942	ENSTSYG00000008315	XRN2	98	70.301	Carlito_syrichta
ENSORLG00000017213	xrn2	94	64.328	ENSCAPG00000010773	XRN2	98	59.197	Cavia_aperea
ENSORLG00000017213	xrn2	97	75.404	ENSCPOG00000009407	XRN2	98	70.717	Cavia_porcellus
ENSORLG00000017213	xrn2	97	74.942	ENSCATG00000040350	XRN2	98	70.576	Cercocebus_atys
ENSORLG00000017213	xrn2	97	75.289	ENSCLAG00000013419	XRN2	98	70.717	Chinchilla_lanigera
ENSORLG00000017213	xrn2	97	74.942	ENSCSAG00000011094	XRN2	98	70.301	Chlorocebus_sabaeus
ENSORLG00000017213	xrn2	65	87.634	ENSCHOG00000013404	XRN2	63	87.634	Choloepus_hoffmanni
ENSORLG00000017213	xrn2	97	75.230	ENSCPBG00000023533	XRN2	98	70.954	Chrysemys_picta_bellii
ENSORLG00000017213	xrn2	93	59.670	ENSCING00000022336	-	100	60.731	Ciona_intestinalis
ENSORLG00000017213	xrn2	91	69.767	ENSCSAVG00000011217	-	96	70.602	Ciona_savignyi
ENSORLG00000017213	xrn2	97	74.942	ENSCANG00000040240	XRN2	98	70.301	Colobus_angolensis_palliatus
ENSORLG00000017213	xrn2	97	75.635	ENSCGRG00001010676	Xrn2	99	71.309	Cricetulus_griseus_chok1gshd
ENSORLG00000017213	xrn2	94	74.584	ENSCGRG00000006378	Xrn2	98	69.968	Cricetulus_griseus_crigri
ENSORLG00000017213	xrn2	58	79.271	ENSCSEG00000005628	xrn2	100	79.271	Cynoglossus_semilaevis
ENSORLG00000017213	xrn2	98	84.755	ENSCVAG00000018999	xrn2	98	91.587	Cyprinodon_variegatus
ENSORLG00000017213	xrn2	96	81.766	ENSDARG00000101900	xrn2	96	84.733	Danio_rerio
ENSORLG00000017213	xrn2	97	74.827	ENSDNOG00000001895	XRN2	98	70.239	Dasypus_novemcinctus
ENSORLG00000017213	xrn2	97	74.134	ENSDORG00000005434	Xrn2	98	69.782	Dipodomys_ordii
ENSORLG00000017213	xrn2	93	55.036	FBgn0031868	Rat1	99	52.526	Drosophila_melanogaster
ENSORLG00000017213	xrn2	91	81.022	ENSETEG00000001740	XRN2	90	81.022	Echinops_telfairi
ENSORLG00000017213	xrn2	91	69.417	ENSEBUG00000016136	xrn2	100	69.417	Eptatretus_burgeri
ENSORLG00000017213	xrn2	97	74.913	ENSEASG00005002484	XRN2	98	70.374	Equus_asinus_asinus
ENSORLG00000017213	xrn2	94	92.308	ENSECAG00000018988	XRN2	95	92.308	Equus_caballus
ENSORLG00000017213	xrn2	72	96.000	ENSEEUG00000009265	XRN2	67	96.000	Erinaceus_europaeus
ENSORLG00000017213	xrn2	97	83.927	ENSELUG00000000552	xrn2	98	80.228	Esox_lucius
ENSORLG00000017213	xrn2	97	74.827	ENSFCAG00000007970	XRN2	98	70.197	Felis_catus
ENSORLG00000017213	xrn2	99	73.791	ENSFALG00000004508	XRN2	96	72.649	Ficedula_albicollis
ENSORLG00000017213	xrn2	97	74.942	ENSFDAG00000016311	XRN2	98	70.405	Fukomys_damarensis
ENSORLG00000017213	xrn2	58	82.759	ENSFHEG00000013039	xrn2	98	82.759	Fundulus_heteroclitus
ENSORLG00000017213	xrn2	93	79.472	ENSGMOG00000013436	xrn2	100	79.472	Gadus_morhua
ENSORLG00000017213	xrn2	97	74.653	ENSGALG00000008372	XRN2	98	68.808	Gallus_gallus
ENSORLG00000017213	xrn2	98	86.682	ENSGAFG00000014284	xrn2	99	86.682	Gambusia_affinis
ENSORLG00000017213	xrn2	94	83.472	ENSGACG00000011870	xrn2	96	88.676	Gasterosteus_aculeatus
ENSORLG00000017213	xrn2	97	75.230	ENSGAGG00000004884	XRN2	98	71.162	Gopherus_agassizii
ENSORLG00000017213	xrn2	97	74.942	ENSGGOG00000013738	XRN2	98	70.301	Gorilla_gorilla
ENSORLG00000017213	xrn2	59	87.931	ENSHBUG00000005077	xrn2	94	87.931	Haplochromis_burtoni
ENSORLG00000017213	xrn2	97	73.788	ENSHGLG00000014831	XRN2	98	69.263	Heterocephalus_glaber_female
ENSORLG00000017213	xrn2	97	73.788	ENSHGLG00100013130	XRN2	98	69.263	Heterocephalus_glaber_male
ENSORLG00000017213	xrn2	97	83.678	ENSHCOG00000011994	xrn2	98	80.062	Hippocampus_comes
ENSORLG00000017213	xrn2	96	83.162	ENSIPUG00000006639	xrn2	99	78.807	Ictalurus_punctatus
ENSORLG00000017213	xrn2	97	74.827	ENSSTOG00000000589	XRN2	98	70.197	Ictidomys_tridecemlineatus
ENSORLG00000017213	xrn2	97	75.635	ENSJJAG00000022128	Xrn2	98	70.717	Jaculus_jaculus
ENSORLG00000017213	xrn2	58	86.948	ENSLBEG00000010041	xrn2	100	86.948	Labrus_bergylta
ENSORLG00000017213	xrn2	95	74.707	ENSLACG00000008307	XRN2	97	75.586	Latimeria_chalumnae
ENSORLG00000017213	xrn2	95	77.869	ENSLOCG00000016874	xrn2	93	80.377	Lepisosteus_oculatus
ENSORLG00000017213	xrn2	97	75.404	ENSLAFG00000014624	XRN2	98	70.717	Loxodonta_africana
ENSORLG00000017213	xrn2	97	74.942	ENSMFAG00000038122	XRN2	98	70.301	Macaca_fascicularis
ENSORLG00000017213	xrn2	97	74.942	ENSMMUG00000011405	XRN2	98	70.301	Macaca_mulatta
ENSORLG00000017213	xrn2	97	75.058	ENSMNEG00000040626	XRN2	98	70.405	Macaca_nemestrina
ENSORLG00000017213	xrn2	97	74.827	ENSMLEG00000041897	XRN2	98	70.197	Mandrillus_leucophaeus
ENSORLG00000017213	xrn2	99	87.628	ENSMAMG00000008633	xrn2	99	85.282	Mastacembelus_armatus
ENSORLG00000017213	xrn2	98	87.657	ENSMZEG00005022362	xrn2	98	88.134	Maylandia_zebra
ENSORLG00000017213	xrn2	97	74.194	ENSMGAG00000003196	XRN2	97	69.831	Meleagris_gallopavo
ENSORLG00000017213	xrn2	97	75.520	ENSMAUG00000021842	Xrn2	98	70.924	Mesocricetus_auratus
ENSORLG00000017213	xrn2	97	74.798	ENSMICG00000008126	XRN2	98	70.270	Microcebus_murinus
ENSORLG00000017213	xrn2	97	74.913	ENSMOCG00000012588	Xrn2	98	70.417	Microtus_ochrogaster
ENSORLG00000017213	xrn2	98	84.580	ENSMMOG00000017576	xrn2	98	84.104	Mola_mola
ENSORLG00000017213	xrn2	97	75.376	ENSMODG00000006163	XRN2	98	71.160	Monodelphis_domestica
ENSORLG00000017213	xrn2	98	84.738	ENSMALG00000011355	xrn2	95	90.211	Monopterus_albus
ENSORLG00000017213	xrn2	97	75.289	MGP_CAROLIEiJ_G0024400	Xrn2	98	70.747	Mus_caroli
ENSORLG00000017213	xrn2	97	75.289	ENSMUSG00000027433	Xrn2	98	70.747	Mus_musculus
ENSORLG00000017213	xrn2	97	75.173	MGP_PahariEiJ_G0025843	Xrn2	98	70.643	Mus_pahari
ENSORLG00000017213	xrn2	97	75.289	MGP_SPRETEiJ_G0025318	Xrn2	94	83.838	Mus_spretus
ENSORLG00000017213	xrn2	97	73.243	ENSMPUG00000001198	XRN2	92	68.846	Mustela_putorius_furo
ENSORLG00000017213	xrn2	97	74.682	ENSMLUG00000001536	XRN2	98	69.958	Myotis_lucifugus
ENSORLG00000017213	xrn2	97	75.751	ENSNGAG00000018138	Xrn2	98	71.132	Nannospalax_galili
ENSORLG00000017213	xrn2	98	87.771	ENSNBRG00000008062	xrn2	98	88.249	Neolamprologus_brichardi
ENSORLG00000017213	xrn2	97	74.942	ENSNLEG00000009991	XRN2	98	70.301	Nomascus_leucogenys
ENSORLG00000017213	xrn2	65	86.667	ENSMEUG00000008622	-	53	86.667	Notamacropus_eugenii
ENSORLG00000017213	xrn2	75	72.105	ENSOPRG00000001397	-	75	72.105	Ochotona_princeps
ENSORLG00000017213	xrn2	97	74.827	ENSODEG00000010745	-	98	70.301	Octodon_degus
ENSORLG00000017213	xrn2	95	68.750	ENSODEG00000000860	-	99	63.848	Octodon_degus
ENSORLG00000017213	xrn2	99	86.621	ENSONIG00000018720	xrn2	98	82.432	Oreochromis_niloticus
ENSORLG00000017213	xrn2	97	74.913	ENSOANG00000015673	XRN2	98	69.574	Ornithorhynchus_anatinus
ENSORLG00000017213	xrn2	97	75.289	ENSOCUG00000013468	XRN2	98	70.509	Oryctolagus_cuniculus
ENSORLG00000017213	xrn2	100	99.588	ENSORLG00020001824	xrn2	100	99.588	Oryzias_latipes_hni
ENSORLG00000017213	xrn2	100	98.868	ENSORLG00015019747	xrn2	100	98.868	Oryzias_latipes_hsok
ENSORLG00000017213	xrn2	97	95.853	ENSOMEG00000019820	xrn2	98	93.424	Oryzias_melastigma
ENSORLG00000017213	xrn2	97	75.058	ENSOGAG00000001068	XRN2	98	70.405	Otolemur_garnettii
ENSORLG00000017213	xrn2	94	73.929	ENSOARG00000004443	XRN2	98	69.264	Ovis_aries
ENSORLG00000017213	xrn2	97	74.942	ENSPPAG00000033549	XRN2	98	70.301	Pan_paniscus
ENSORLG00000017213	xrn2	97	74.827	ENSPPRG00000008732	XRN2	98	70.197	Panthera_pardus
ENSORLG00000017213	xrn2	94	74.286	ENSPTIG00000015683	XRN2	96	69.584	Panthera_tigris_altaica
ENSORLG00000017213	xrn2	97	74.942	ENSPTRG00000013308	XRN2	98	70.301	Pan_troglodytes
ENSORLG00000017213	xrn2	97	74.942	ENSPANG00000018088	XRN2	98	70.301	Papio_anubis
ENSORLG00000017213	xrn2	97	82.639	ENSPKIG00000016889	xrn2	98	77.386	Paramormyrops_kingsleyae
ENSORLG00000017213	xrn2	87	75.481	ENSPSIG00000014666	XRN2	100	75.481	Pelodiscus_sinensis
ENSORLG00000017213	xrn2	97	75.404	ENSPEMG00000000111	Xrn2	98	70.717	Peromyscus_maniculatus_bairdii
ENSORLG00000017213	xrn2	97	86.536	ENSPFOG00000004182	xrn2	98	83.316	Poecilia_formosa
ENSORLG00000017213	xrn2	98	86.682	ENSPLAG00000007351	xrn2	98	86.682	Poecilia_latipinna
ENSORLG00000017213	xrn2	91	85.767	ENSPMEG00000011798	xrn2	98	82.431	Poecilia_mexicana
ENSORLG00000017213	xrn2	97	86.982	ENSPREG00000012452	xrn2	98	86.942	Poecilia_reticulata
ENSORLG00000017213	xrn2	97	74.335	ENSPPYG00000010755	XRN2	98	69.751	Pongo_abelii
ENSORLG00000017213	xrn2	97	70.392	ENSPCAG00000011191	XRN2	98	66.354	Procavia_capensis
ENSORLG00000017213	xrn2	97	68.324	ENSPCOG00000016468	XRN2	98	64.449	Propithecus_coquereli
ENSORLG00000017213	xrn2	93	66.135	ENSPVAG00000004596	XRN2	91	66.135	Pteropus_vampyrus
ENSORLG00000017213	xrn2	98	85.829	ENSPNYG00000001765	xrn2	98	86.290	Pundamilia_nyererei
ENSORLG00000017213	xrn2	96	83.372	ENSPNAG00000010956	xrn2	98	79.171	Pygocentrus_nattereri
ENSORLG00000017213	xrn2	97	75.635	ENSRNOG00000011785	Xrn2	98	70.954	Rattus_norvegicus
ENSORLG00000017213	xrn2	93	75.933	ENSRBIG00000036193	XRN2	100	75.933	Rhinopithecus_bieti
ENSORLG00000017213	xrn2	97	74.942	ENSRROG00000044400	XRN2	89	70.301	Rhinopithecus_roxellana
ENSORLG00000017213	xrn2	99	38.563	YOR048C	RAT1	80	53.623	Saccharomyces_cerevisiae
ENSORLG00000017213	xrn2	97	75.289	ENSSBOG00000021014	XRN2	98	70.509	Saimiri_boliviensis_boliviensis
ENSORLG00000017213	xrn2	97	82.679	ENSSFOG00015001091	xrn2	96	79.763	Scleropages_formosus
ENSORLG00000017213	xrn2	99	85.617	ENSSMAG00000007834	xrn2	98	83.299	Scophthalmus_maximus
ENSORLG00000017213	xrn2	98	86.613	ENSSDUG00000012802	xrn2	99	86.560	Seriola_dumerili
ENSORLG00000017213	xrn2	99	88.209	ENSSLDG00000021273	xrn2	100	88.189	Seriola_lalandi_dorsalis
ENSORLG00000017213	xrn2	68	96.000	ENSSARG00000005859	-	66	96.000	Sorex_araneus
ENSORLG00000017213	xrn2	97	73.041	ENSSPUG00000005485	XRN2	94	69.775	Sphenodon_punctatus
ENSORLG00000017213	xrn2	99	87.528	ENSSPAG00000016027	xrn2	98	85.266	Stegastes_partitus
ENSORLG00000017213	xrn2	97	73.441	ENSSSCG00000007109	XRN2	98	68.951	Sus_scrofa
ENSORLG00000017213	xrn2	96	74.710	ENSTGUG00000007535	XRN2	96	71.413	Taeniopygia_guttata
ENSORLG00000017213	xrn2	99	83.805	ENSTRUG00000015489	xrn2	98	81.128	Takifugu_rubripes
ENSORLG00000017213	xrn2	98	82.818	ENSTNIG00000010712	xrn2	91	82.386	Tetraodon_nigroviridis
ENSORLG00000017213	xrn2	97	74.942	ENSTBEG00000004119	XRN2	98	70.197	Tupaia_belangeri
ENSORLG00000017213	xrn2	93	78.169	ENSTTRG00000009087	XRN2	91	78.169	Tursiops_truncatus
ENSORLG00000017213	xrn2	97	75.058	ENSUAMG00000024634	XRN2	98	70.405	Ursus_americanus
ENSORLG00000017213	xrn2	94	74.405	ENSUMAG00000004012	XRN2	93	69.691	Ursus_maritimus
ENSORLG00000017213	xrn2	82	84.142	ENSVPAG00000010694	XRN2	83	84.142	Vicugna_pacos
ENSORLG00000017213	xrn2	97	75.058	ENSVVUG00000012178	XRN2	98	70.405	Vulpes_vulpes
ENSORLG00000017213	xrn2	96	76.663	ENSXETG00000023501	xrn2	98	72.063	Xenopus_tropicalis
ENSORLG00000017213	xrn2	97	86.536	ENSXMAG00000000242	xrn2	92	89.538	Xiphophorus_maculatus