EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000017240 (Gene tree)
Gene ID: 101164119
Gene Symbol: crnkl1
Alias: -
Full Name: crooked neck pre-mRNA splicing factor 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 11482 bases
Position: chr24:16308771-16320252
Accession: 101164119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000036740	HAT	PF02184.16	2.7e-35	1	2
ENSORLP00000036740	HAT	PF02184.16	2.7e-35	2	2
ENSORLP00000043278	HAT	PF02184.16	3.6e-35	1	2
ENSORLP00000043278	HAT	PF02184.16	3.6e-35	2	2
ENSORLP00000021573	HAT	PF02184.16	1.9e-24	1	2
ENSORLP00000021573	HAT	PF02184.16	1.9e-24	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000034800	-	4675	XM_004083749	ENSORLP00000043278	748 (aa)	XP_004083797	UPI0000E9FCFD
ENSORLT00000021574	-	2133	-	ENSORLP00000021573	710 (aa)	-	H2MS39
ENSORLT00000026937	-	4594	-	ENSORLP00000036740	721 (aa)	-	-

Gene Model

Click here to download ENSORLG00000017240's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000017240's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000017240	crnkl1	94	81.426	ENSG00000101343	CRNKL1	97	85.135	Homo_sapiens
ENSORLG00000017240	crnkl1	100	87.763	ENSAPOG00000009705	crnkl1	98	91.483	Acanthochromis_polyacanthus
ENSORLG00000017240	crnkl1	95	80.584	ENSAMEG00000000270	CRNKL1	80	86.036	Ailuropoda_melanoleuca
ENSORLG00000017240	crnkl1	94	89.053	ENSACIG00000015267	crnkl1	98	89.053	Amphilophus_citrinellus
ENSORLG00000017240	crnkl1	100	88.212	ENSAOCG00000021964	crnkl1	100	88.344	Amphiprion_ocellaris
ENSORLG00000017240	crnkl1	100	88.845	ENSAPEG00000015041	crnkl1	100	88.845	Amphiprion_percula
ENSORLG00000017240	crnkl1	96	87.734	ENSATEG00000001068	crnkl1	94	88.145	Anabas_testudineus
ENSORLG00000017240	crnkl1	96	78.986	ENSAPLG00000013105	CRNKL1	97	83.358	Anas_platyrhynchos
ENSORLG00000017240	crnkl1	96	80.753	ENSACAG00000005284	CRNKL1	99	84.357	Anolis_carolinensis
ENSORLG00000017240	crnkl1	89	81.005	ENSANAG00000024889	CRNKL1	99	84.921	Aotus_nancymaae
ENSORLG00000017240	crnkl1	96	88.611	ENSACLG00000010813	crnkl1	100	86.605	Astatotilapia_calliptera
ENSORLG00000017240	crnkl1	94	85.565	ENSAMXG00000018334	crnkl1	95	85.977	Astyanax_mexicanus
ENSORLG00000017240	crnkl1	94	82.318	ENSBTAG00000008472	CRNKL1	96	86.036	Bos_taurus
ENSORLG00000017240	crnkl1	90	61.883	WBGene00019762	M03F8.3	96	60.888	Caenorhabditis_elegans
ENSORLG00000017240	crnkl1	94	81.724	ENSCJAG00000005393	CRNKL1	97	85.435	Callithrix_jacchus
ENSORLG00000017240	crnkl1	93	82.186	ENSCAFG00000005333	CRNKL1	91	86.036	Canis_familiaris
ENSORLG00000017240	crnkl1	94	82.318	ENSCAFG00020027488	CRNKL1	97	86.036	Canis_lupus_dingo
ENSORLG00000017240	crnkl1	94	82.615	ENSCHIG00000013171	CRNKL1	96	85.135	Capra_hircus
ENSORLG00000017240	crnkl1	94	81.575	ENSTSYG00000004197	CRNKL1	97	85.285	Carlito_syrichta
ENSORLG00000017240	crnkl1	87	78.045	ENSCAPG00000010501	CRNKL1	99	81.745	Cavia_aperea
ENSORLG00000017240	crnkl1	96	79.710	ENSCPOG00000004418	CRNKL1	99	83.066	Cavia_porcellus
ENSORLG00000017240	crnkl1	94	81.872	ENSCCAG00000027037	CRNKL1	97	85.586	Cebus_capucinus
ENSORLG00000017240	crnkl1	94	81.426	ENSCATG00000034247	CRNKL1	97	85.135	Cercocebus_atys
ENSORLG00000017240	crnkl1	96	79.855	ENSCLAG00000013859	CRNKL1	99	83.212	Chinchilla_lanigera
ENSORLG00000017240	crnkl1	94	81.426	ENSCSAG00000011434	CRNKL1	97	85.135	Chlorocebus_sabaeus
ENSORLG00000017240	crnkl1	95	79.854	ENSCHOG00000006371	CRNKL1	81	85.285	Choloepus_hoffmanni
ENSORLG00000017240	crnkl1	96	81.476	ENSCPBG00000023501	CRNKL1	100	84.985	Chrysemys_picta_bellii
ENSORLG00000017240	crnkl1	94	66.369	ENSCING00000002709	-	99	67.982	Ciona_intestinalis
ENSORLG00000017240	crnkl1	94	81.426	ENSCANG00000038789	CRNKL1	97	85.135	Colobus_angolensis_palliatus
ENSORLG00000017240	crnkl1	96	79.539	ENSCGRG00001000687	-	99	83.358	Cricetulus_griseus_chok1gshd
ENSORLG00000017240	crnkl1	96	79.539	ENSCGRG00001001115	-	99	83.358	Cricetulus_griseus_chok1gshd
ENSORLG00000017240	crnkl1	96	79.539	ENSCGRG00000007854	Crnkl1	99	83.358	Cricetulus_griseus_crigri
ENSORLG00000017240	crnkl1	100	83.663	ENSCSEG00000005594	crnkl1	90	88.062	Cynoglossus_semilaevis
ENSORLG00000017240	crnkl1	94	87.834	ENSCVAG00000015172	crnkl1	96	87.744	Cyprinodon_variegatus
ENSORLG00000017240	crnkl1	94	84.615	ENSDARG00000007901	crnkl1	95	84.895	Danio_rerio
ENSORLG00000017240	crnkl1	94	81.872	ENSDNOG00000016226	CRNKL1	92	85.586	Dasypus_novemcinctus
ENSORLG00000017240	crnkl1	94	74.332	ENSDORG00000030174	-	99	77.961	Dipodomys_ordii
ENSORLG00000017240	crnkl1	96	78.788	ENSDORG00000000394	-	99	81.621	Dipodomys_ordii
ENSORLG00000017240	crnkl1	93	75.149	ENSDORG00000023724	-	98	78.797	Dipodomys_ordii
ENSORLG00000017240	crnkl1	94	64.706	FBgn0000377	crn	99	66.187	Drosophila_melanogaster
ENSORLG00000017240	crnkl1	94	73.848	ENSETEG00000003711	CRNKL1	81	75.075	Echinops_telfairi
ENSORLG00000017240	crnkl1	94	60.489	ENSEBUG00000013461	crnkl1	94	60.489	Eptatretus_burgeri
ENSORLG00000017240	crnkl1	96	80.608	ENSEASG00005002072	CRNKL1	99	84.088	Equus_asinus_asinus
ENSORLG00000017240	crnkl1	96	80.608	ENSECAG00000022215	CRNKL1	99	84.088	Equus_caballus
ENSORLG00000017240	crnkl1	95	80.000	ENSEEUG00000000413	CRNKL1	90	83.333	Erinaceus_europaeus
ENSORLG00000017240	crnkl1	94	85.015	ENSELUG00000015424	crnkl1	96	88.148	Esox_lucius
ENSORLG00000017240	crnkl1	96	80.725	ENSFCAG00000000714	CRNKL1	99	84.088	Felis_catus
ENSORLG00000017240	crnkl1	92	80.577	ENSFALG00000004611	CRNKL1	97	84.227	Ficedula_albicollis
ENSORLG00000017240	crnkl1	96	79.710	ENSFDAG00000000604	CRNKL1	99	83.066	Fukomys_damarensis
ENSORLG00000017240	crnkl1	100	83.075	ENSFHEG00000013163	crnkl1	100	81.218	Fundulus_heteroclitus
ENSORLG00000017240	crnkl1	94	85.757	ENSGMOG00000007609	crnkl1	99	84.562	Gadus_morhua
ENSORLG00000017240	crnkl1	94	81.899	ENSGALG00000008429	CRNKL1	97	85.757	Gallus_gallus
ENSORLG00000017240	crnkl1	95	87.334	ENSGAFG00000014249	crnkl1	94	87.552	Gambusia_affinis
ENSORLG00000017240	crnkl1	96	88.116	ENSGACG00000011852	crnkl1	93	88.905	Gasterosteus_aculeatus
ENSORLG00000017240	crnkl1	92	80.938	ENSGAGG00000021233	CRNKL1	100	83.333	Gopherus_agassizii
ENSORLG00000017240	crnkl1	94	81.426	ENSGGOG00000014176	CRNKL1	97	85.135	Gorilla_gorilla
ENSORLG00000017240	crnkl1	97	88.583	ENSHBUG00000005246	crnkl1	100	86.905	Haplochromis_burtoni
ENSORLG00000017240	crnkl1	94	81.278	ENSHGLG00000010856	CRNKL1	97	84.985	Heterocephalus_glaber_female
ENSORLG00000017240	crnkl1	94	81.278	ENSHGLG00100011521	CRNKL1	97	84.985	Heterocephalus_glaber_male
ENSORLG00000017240	crnkl1	94	86.795	ENSHCOG00000006420	crnkl1	97	88.839	Hippocampus_comes
ENSORLG00000017240	crnkl1	93	71.343	ENSIPUG00000006836	-	99	75.037	Ictalurus_punctatus
ENSORLG00000017240	crnkl1	94	80.463	ENSIPUG00000006751	crnkl1	98	82.062	Ictalurus_punctatus
ENSORLG00000017240	crnkl1	85	69.921	ENSIPUG00000000315	-	99	69.921	Ictalurus_punctatus
ENSORLG00000017240	crnkl1	96	80.435	ENSSTOG00000014747	CRNKL1	99	83.796	Ictidomys_tridecemlineatus
ENSORLG00000017240	crnkl1	96	79.542	ENSJJAG00000016926	Crnkl1	99	81.598	Jaculus_jaculus
ENSORLG00000017240	crnkl1	96	87.258	ENSKMAG00000003620	crnkl1	90	88.494	Kryptolebias_marmoratus
ENSORLG00000017240	crnkl1	94	79.160	ENSLBEG00000003543	crnkl1	94	80.689	Labrus_bergylta
ENSORLG00000017240	crnkl1	96	82.200	ENSLACG00000001129	CRNKL1	98	87.256	Latimeria_chalumnae
ENSORLG00000017240	crnkl1	99	90.226	ENSLOCG00000016889	crnkl1	98	86.037	Lepisosteus_oculatus
ENSORLG00000017240	crnkl1	93	83.382	ENSLAFG00000004512	CRNKL1	99	84.111	Loxodonta_africana
ENSORLG00000017240	crnkl1	94	81.426	ENSMFAG00000039893	CRNKL1	97	85.135	Macaca_fascicularis
ENSORLG00000017240	crnkl1	94	81.426	ENSMMUG00000007709	CRNKL1	97	85.135	Macaca_mulatta
ENSORLG00000017240	crnkl1	94	81.426	ENSMNEG00000037490	CRNKL1	97	85.135	Macaca_nemestrina
ENSORLG00000017240	crnkl1	94	81.426	ENSMLEG00000034885	CRNKL1	97	85.135	Mandrillus_leucophaeus
ENSORLG00000017240	crnkl1	96	88.982	ENSMAMG00000008757	crnkl1	94	88.982	Mastacembelus_armatus
ENSORLG00000017240	crnkl1	100	86.853	ENSMZEG00005022345	crnkl1	100	86.587	Maylandia_zebra
ENSORLG00000017240	crnkl1	96	79.740	ENSMGAG00000003452	CRNKL1	92	85.030	Meleagris_gallopavo
ENSORLG00000017240	crnkl1	96	79.539	ENSMAUG00000020764	Crnkl1	99	83.358	Mesocricetus_auratus
ENSORLG00000017240	crnkl1	96	80.145	ENSMICG00000006048	CRNKL1	99	83.504	Microcebus_murinus
ENSORLG00000017240	crnkl1	96	73.247	ENSMOCG00000000681	-	99	76.040	Microtus_ochrogaster
ENSORLG00000017240	crnkl1	96	57.887	ENSMOCG00000004179	-	98	61.377	Microtus_ochrogaster
ENSORLG00000017240	crnkl1	89	88.401	ENSMMOG00000017601	crnkl1	97	90.981	Mola_mola
ENSORLG00000017240	crnkl1	96	75.360	ENSMODG00000010857	-	99	79.472	Monodelphis_domestica
ENSORLG00000017240	crnkl1	96	78.963	ENSMODG00000005961	-	99	81.412	Monodelphis_domestica
ENSORLG00000017240	crnkl1	95	64.196	ENSMALG00000011211	crnkl1	93	71.849	Monopterus_albus
ENSORLG00000017240	crnkl1	96	79.827	MGP_CAROLIEiJ_G0024394	Crnkl1	99	83.796	Mus_caroli
ENSORLG00000017240	crnkl1	96	79.683	ENSMUSG00000001767	Crnkl1	97	85.586	Mus_musculus
ENSORLG00000017240	crnkl1	96	78.530	MGP_PahariEiJ_G0025838	Crnkl1	97	84.384	Mus_pahari
ENSORLG00000017240	crnkl1	96	79.539	MGP_SPRETEiJ_G0025312	Crnkl1	97	85.435	Mus_spretus
ENSORLG00000017240	crnkl1	96	80.725	ENSMPUG00000001226	CRNKL1	99	84.088	Mustela_putorius_furo
ENSORLG00000017240	crnkl1	95	80.292	ENSMLUG00000016513	CRNKL1	86	85.457	Myotis_lucifugus
ENSORLG00000017240	crnkl1	96	79.167	ENSNGAG00000023097	Crnkl1	99	81.519	Nannospalax_galili
ENSORLG00000017240	crnkl1	96	88.750	ENSNBRG00000007867	crnkl1	100	86.034	Neolamprologus_brichardi
ENSORLG00000017240	crnkl1	94	79.346	ENSNLEG00000009862	CRNKL1	97	81.982	Nomascus_leucogenys
ENSORLG00000017240	crnkl1	94	80.593	ENSMEUG00000012167	-	100	84.030	Notamacropus_eugenii
ENSORLG00000017240	crnkl1	94	76.844	ENSMEUG00000002361	-	97	80.179	Notamacropus_eugenii
ENSORLG00000017240	crnkl1	79	57.115	ENSOPRG00000009242	-	62	57.115	Ochotona_princeps
ENSORLG00000017240	crnkl1	96	79.855	ENSODEG00000012175	CRNKL1	99	83.212	Octodon_degus
ENSORLG00000017240	crnkl1	96	88.472	ENSONIG00000018728	crnkl1	100	86.675	Oreochromis_niloticus
ENSORLG00000017240	crnkl1	93	80.746	ENSOCUG00000015484	CRNKL1	80	85.180	Oryctolagus_cuniculus
ENSORLG00000017240	crnkl1	100	98.930	ENSORLG00020001742	crnkl1	100	98.930	Oryzias_latipes_hni
ENSORLG00000017240	crnkl1	100	99.067	ENSORLG00015019564	crnkl1	100	99.067	Oryzias_latipes_hsok
ENSORLG00000017240	crnkl1	100	95.861	ENSOMEG00000019895	crnkl1	100	95.861	Oryzias_melastigma
ENSORLG00000017240	crnkl1	96	80.000	ENSOGAG00000011544	CRNKL1	99	83.358	Otolemur_garnettii
ENSORLG00000017240	crnkl1	93	82.335	ENSOARG00000002150	CRNKL1	87	86.186	Ovis_aries
ENSORLG00000017240	crnkl1	93	81.437	ENSPPAG00000027847	CRNKL1	81	84.084	Pan_paniscus
ENSORLG00000017240	crnkl1	96	80.725	ENSPPRG00000001955	CRNKL1	99	84.088	Panthera_pardus
ENSORLG00000017240	crnkl1	96	80.725	ENSPTIG00000007393	CRNKL1	99	84.088	Panthera_tigris_altaica
ENSORLG00000017240	crnkl1	94	82.432	ENSPTRG00000030609	CRNKL1	97	85.135	Pan_troglodytes
ENSORLG00000017240	crnkl1	93	82.576	ENSPANG00000017420	CRNKL1	97	85.135	Papio_anubis
ENSORLG00000017240	crnkl1	93	81.548	ENSPKIG00000017093	crnkl1	89	82.920	Paramormyrops_kingsleyae
ENSORLG00000017240	crnkl1	96	80.378	ENSPSIG00000012705	CRNKL1	99	83.748	Pelodiscus_sinensis
ENSORLG00000017240	crnkl1	98	79.888	ENSPMGG00000006263	crnkl1	95	84.627	Periophthalmus_magnuspinnatus
ENSORLG00000017240	crnkl1	96	79.539	ENSPEMG00000000073	-	99	83.504	Peromyscus_maniculatus_bairdii
ENSORLG00000017240	crnkl1	96	78.894	ENSPMAG00000002250	crnkl1	98	81.738	Petromyzon_marinus
ENSORLG00000017240	crnkl1	99	84.925	ENSPCIG00000025825	CRNKL1	94	84.925	Phascolarctos_cinereus
ENSORLG00000017240	crnkl1	90	91.505	ENSPFOG00000005102	crnkl1	96	87.692	Poecilia_formosa
ENSORLG00000017240	crnkl1	96	87.692	ENSPLAG00000007288	crnkl1	93	87.692	Poecilia_latipinna
ENSORLG00000017240	crnkl1	90	91.654	ENSPMEG00000008865	crnkl1	97	87.832	Poecilia_mexicana
ENSORLG00000017240	crnkl1	94	87.240	ENSPREG00000012615	crnkl1	96	87.083	Poecilia_reticulata
ENSORLG00000017240	crnkl1	93	81.138	ENSPPYG00000010747	CRNKL1	79	84.985	Pongo_abelii
ENSORLG00000017240	crnkl1	93	77.246	ENSPCAG00000003296	CRNKL1	83	81.081	Procavia_capensis
ENSORLG00000017240	crnkl1	92	82.059	ENSPCOG00000017608	CRNKL1	83	82.190	Propithecus_coquereli
ENSORLG00000017240	crnkl1	93	82.036	ENSPVAG00000006207	CRNKL1	81	85.886	Pteropus_vampyrus
ENSORLG00000017240	crnkl1	96	88.472	ENSPNYG00000001977	crnkl1	100	86.093	Pundamilia_nyererei
ENSORLG00000017240	crnkl1	95	85.169	ENSPNAG00000001507	crnkl1	96	86.398	Pygocentrus_nattereri
ENSORLG00000017240	crnkl1	96	79.683	ENSRNOG00000010587	Crnkl1	97	85.586	Rattus_norvegicus
ENSORLG00000017240	crnkl1	96	79.539	ENSRNOG00000040045	Crnkl1	97	85.435	Rattus_norvegicus
ENSORLG00000017240	crnkl1	94	81.426	ENSRBIG00000031770	CRNKL1	97	85.135	Rhinopithecus_bieti
ENSORLG00000017240	crnkl1	94	81.278	ENSRROG00000040450	CRNKL1	97	84.985	Rhinopithecus_roxellana
ENSORLG00000017240	crnkl1	91	36.494	YLR117C	CLF1	99	38.116	Saccharomyces_cerevisiae
ENSORLG00000017240	crnkl1	94	81.724	ENSSBOG00000029672	CRNKL1	97	85.435	Saimiri_boliviensis_boliviensis
ENSORLG00000017240	crnkl1	92	66.214	ENSSHAG00000011199	CRNKL1	99	69.406	Sarcophilus_harrisii
ENSORLG00000017240	crnkl1	89	89.140	ENSSFOG00015000946	crnkl1	99	82.045	Scleropages_formosus
ENSORLG00000017240	crnkl1	96	88.039	ENSSMAG00000007933	crnkl1	100	84.217	Scophthalmus_maximus
ENSORLG00000017240	crnkl1	98	79.745	ENSSDUG00000012625	crnkl1	92	81.641	Seriola_dumerili
ENSORLG00000017240	crnkl1	97	88.966	ENSSLDG00000021413	crnkl1	93	89.136	Seriola_lalandi_dorsalis
ENSORLG00000017240	crnkl1	96	79.855	ENSSARG00000006443	CRNKL1	80	85.135	Sorex_araneus
ENSORLG00000017240	crnkl1	94	81.711	ENSSPUG00000005254	CRNKL1	98	85.544	Sphenodon_punctatus
ENSORLG00000017240	crnkl1	96	90.111	ENSSPAG00000016150	crnkl1	97	88.149	Stegastes_partitus
ENSORLG00000017240	crnkl1	94	82.318	ENSSSCG00000038587	CRNKL1	96	86.036	Sus_scrofa
ENSORLG00000017240	crnkl1	94	81.602	ENSTGUG00000007645	CRNKL1	96	84.880	Taeniopygia_guttata
ENSORLG00000017240	crnkl1	89	87.443	ENSTRUG00000015417	crnkl1	94	83.453	Takifugu_rubripes
ENSORLG00000017240	crnkl1	94	86.370	ENSTNIG00000010710	crnkl1	98	88.676	Tetraodon_nigroviridis
ENSORLG00000017240	crnkl1	88	79.272	ENSTBEG00000001304	CRNKL1	82	83.333	Tupaia_belangeri
ENSORLG00000017240	crnkl1	88	77.373	ENSTTRG00000000484	CRNKL1	81	81.270	Tursiops_truncatus
ENSORLG00000017240	crnkl1	96	80.725	ENSUAMG00000018586	CRNKL1	99	84.088	Ursus_americanus
ENSORLG00000017240	crnkl1	96	80.725	ENSUMAG00000024957	CRNKL1	99	84.088	Ursus_maritimus
ENSORLG00000017240	crnkl1	93	82.186	ENSVVUG00000012559	CRNKL1	80	86.036	Vulpes_vulpes
ENSORLG00000017240	crnkl1	96	81.871	ENSXETG00000009698	crnkl1	100	83.866	Xenopus_tropicalis
ENSORLG00000017240	crnkl1	94	87.611	ENSXCOG00000000824	crnkl1	96	86.130	Xiphophorus_couchianus
ENSORLG00000017240	crnkl1	90	91.505	ENSXMAG00000006896	crnkl1	96	87.083	Xiphophorus_maculatus