EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSORLG00000017479 (Gene tree)
Gene ID
101159058
Gene Symbol
pabpc4
Alias
-
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Oryzias_latipes
Status
putative
Strand
Minus strand
Length
11176 bases
Position
chr22:16800747-16811922
Accession
101159058
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00000021857PABPPF00658.185.8e-3011
ENSORLP00000021856PABPPF00658.186.5e-3011
ENSORLP00000021856RRM_5PF13893.64.6e-0911
ENSORLP00000021857RRM_5PF13893.66e-0811
ENSORLP00000021856RRM_1PF00076.221.4e-8914
ENSORLP00000021856RRM_1PF00076.221.4e-8924
ENSORLP00000021856RRM_1PF00076.221.4e-8934
ENSORLP00000021856RRM_1PF00076.221.4e-8944
ENSORLP00000021857RRM_1PF00076.221.1e-7414
ENSORLP00000021857RRM_1PF00076.221.1e-7424
ENSORLP00000021857RRM_1PF00076.221.1e-7434
ENSORLP00000021857RRM_1PF00076.221.1e-7444
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00000021858-3337-ENSORLP00000021857539 (aa)-H2MSW4
ENSORLT00000021857-3607XM_004082383ENSORLP00000021856629 (aa)XP_004082431H2MSW3
Gene Model
Click here to download ENSORLG00000017479's gene model file
Pathways
Pathway IDPathway NameSource
ola03013RNA transportKEGG
ola03015mRNA surveillance pathwayKEGG
ola03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000017479's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSORLG00000017479pabpc45138.636ENSORLG00000003894-5339.535
ENSORLG00000017479pabpc45834.615ENSORLG00000000087-8634.615
ENSORLG00000017479pabpc45830.435ENSORLG00000010428trnau1apa6230.435
ENSORLG00000017479pabpc45230.769ENSORLG00000024508rbm455830.769
ENSORLG00000017479pabpc45730.939ENSORLG00000030284-6630.939
ENSORLG00000017479pabpc49883.385ENSORLG00000003008-9983.642
ENSORLG00000017479pabpc45337.500ENSORLG00000017111-5837.500
ENSORLG00000017479pabpc49777.846ENSORLG00000010322pabpc1l10077.846
ENSORLG00000017479pabpc45936.145ENSORLG00000004217ELAVL29231.126
ENSORLG00000017479pabpc49784.259ENSORLG00000002691pabpc1a9884.259
ENSORLG00000017479pabpc46033.981ENSORLG00000007807rbms2b5433.981
ENSORLG00000017479pabpc45834.940ENSORLG00000028487elavl48134.940
ENSORLG00000017479pabpc45936.145ENSORLG00000005379elavl39236.145
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00000017479pabpc49990.741ENSG00000090621PABPC49998.000Homo_sapiens
ENSORLG00000017479pabpc49896.914ENSAPOG00000001161pabpc49996.914Acanthochromis_polyacanthus
ENSORLG00000017479pabpc49990.741ENSAMEG00000011535-9990.741Ailuropoda_melanoleuca
ENSORLG00000017479pabpc49749.919ENSAMEG00000015083-9856.013Ailuropoda_melanoleuca
ENSORLG00000017479pabpc49996.914ENSACIG00000023343pabpc49996.914Amphilophus_citrinellus
ENSORLG00000017479pabpc49896.914ENSAOCG00000021529pabpc49996.914Amphiprion_ocellaris
ENSORLG00000017479pabpc49896.914ENSAPEG00000019196pabpc49996.914Amphiprion_percula
ENSORLG00000017479pabpc49896.308ENSATEG00000007402pabpc49996.605Anabas_testudineus
ENSORLG00000017479pabpc49991.975ENSAPLG00000009729-9991.975Anas_platyrhynchos
ENSORLG00000017479pabpc49892.885ENSACAG00000002544PABPC49992.885Anolis_carolinensis
ENSORLG00000017479pabpc49990.741ENSANAG00000025079PABPC49990.741Aotus_nancymaae
ENSORLG00000017479pabpc49997.222ENSACLG00000019558pabpc49997.222Astatotilapia_calliptera
ENSORLG00000017479pabpc49984.652ENSAMXG00000018779pabpc49885.048Astyanax_mexicanus
ENSORLG00000017479pabpc49991.049ENSBTAG00000017125PABPC49991.049Bos_taurus
ENSORLG00000017479pabpc46284.431ENSBTAG00000048536-9384.431Bos_taurus
ENSORLG00000017479pabpc47480.357ENSCJAG00000045953-8578.571Callithrix_jacchus
ENSORLG00000017479pabpc49990.741ENSCJAG00000002512-9990.741Callithrix_jacchus
ENSORLG00000017479pabpc49991.049ENSCAFG00000003081PABPC49991.049Canis_familiaris
ENSORLG00000017479pabpc49991.049ENSCAFG00020004161PABPC49991.049Canis_lupus_dingo
ENSORLG00000017479pabpc49991.049ENSCHIG00000019398-9991.049Capra_hircus
ENSORLG00000017479pabpc49974.769ENSCHIG00000023385-9975.000Capra_hircus
ENSORLG00000017479pabpc49991.049ENSTSYG00000006532PABPC49991.049Carlito_syrichta
ENSORLG00000017479pabpc49990.994ENSCAPG00000015984PABPC49990.994Cavia_aperea
ENSORLG00000017479pabpc49991.358ENSCPOG00000009552PABPC49991.358Cavia_porcellus
ENSORLG00000017479pabpc49990.741ENSCCAG00000037306PABPC49990.741Cebus_capucinus
ENSORLG00000017479pabpc49991.049ENSCATG00000042164PABPC49991.049Cercocebus_atys
ENSORLG00000017479pabpc49991.049ENSCLAG00000011899PABPC49991.049Chinchilla_lanigera
ENSORLG00000017479pabpc49991.049ENSCSAG00000001135PABPC49991.049Chlorocebus_sabaeus
ENSORLG00000017479pabpc48688.684ENSCHOG00000005327PABPC47990.734Choloepus_hoffmanni
ENSORLG00000017479pabpc49993.827ENSCPBG00000001038PABPC49993.827Chrysemys_picta_bellii
ENSORLG00000017479pabpc49891.746ENSCANG00000034177PABPC49991.746Colobus_angolensis_palliatus
ENSORLG00000017479pabpc49790.741ENSCGRG00001018166Pabpc49890.741Cricetulus_griseus_chok1gshd
ENSORLG00000017479pabpc49691.429ENSCGRG00000009777Pabpc49891.429Cricetulus_griseus_crigri
ENSORLG00000017479pabpc49995.988ENSCSEG00000000130pabpc49995.988Cynoglossus_semilaevis
ENSORLG00000017479pabpc49897.778ENSCVAG00000019246pabpc49997.778Cyprinodon_variegatus
ENSORLG00000017479pabpc49795.385ENSDARG00000059259pabpc410095.385Danio_rerio
ENSORLG00000017479pabpc49890.909ENSDNOG00000018444-9990.909Dasypus_novemcinctus
ENSORLG00000017479pabpc49991.049ENSDORG00000011581Pabpc49991.049Dipodomys_ordii
ENSORLG00000017479pabpc49990.625ENSETEG00000018453-8490.625Echinops_telfairi
ENSORLG00000017479pabpc49254.167ENSETEG00000009172-9854.167Echinops_telfairi
ENSORLG00000017479pabpc49884.568ENSEBUG00000000992pabpc410076.228Eptatretus_burgeri
ENSORLG00000017479pabpc49684.615ENSEBUG00000013782pabpc49984.877Eptatretus_burgeri
ENSORLG00000017479pabpc49991.049ENSEASG00005014119PABPC49991.049Equus_asinus_asinus
ENSORLG00000017479pabpc49991.049ENSECAG00000009396PABPC49991.049Equus_caballus
ENSORLG00000017479pabpc49690.123ENSEEUG00000002962PABPC49990.123Erinaceus_europaeus
ENSORLG00000017479pabpc49795.077ENSELUG00000003195pabpc49995.077Esox_lucius
ENSORLG00000017479pabpc49991.049ENSFCAG00000015254-9991.049Felis_catus
ENSORLG00000017479pabpc49992.901ENSFALG00000000543PABPC49992.901Ficedula_albicollis
ENSORLG00000017479pabpc49991.049ENSFDAG00000020016-9991.049Fukomys_damarensis
ENSORLG00000017479pabpc48951.477ENSFDAG00000010581-9949.914Fukomys_damarensis
ENSORLG00000017479pabpc49997.840ENSFHEG00000007548pabpc49997.840Fundulus_heteroclitus
ENSORLG00000017479pabpc49994.154ENSGMOG00000019025pabpc49994.154Gadus_morhua
ENSORLG00000017479pabpc49992.901ENSGALG00000003800PABPC49992.901Gallus_gallus
ENSORLG00000017479pabpc49997.222ENSGAFG00000018195pabpc49898.889Gambusia_affinis
ENSORLG00000017479pabpc49995.385ENSGACG00000007179pabpc49995.679Gasterosteus_aculeatus
ENSORLG00000017479pabpc49993.519ENSGAGG00000001888PABPC49993.519Gopherus_agassizii
ENSORLG00000017479pabpc49990.741ENSGGOG00000004002PABPC49990.741Gorilla_gorilla
ENSORLG00000017479pabpc49997.222ENSHBUG00000020206pabpc49997.222Haplochromis_burtoni
ENSORLG00000017479pabpc49991.049ENSHGLG00000011162PABPC49991.049Heterocephalus_glaber_female
ENSORLG00000017479pabpc49991.049ENSHGLG00100001580PABPC49991.049Heterocephalus_glaber_male
ENSORLG00000017479pabpc49996.000ENSHCOG00000012694pabpc49996.296Hippocampus_comes
ENSORLG00000017479pabpc49694.444ENSIPUG00000016620pabpc49994.444Ictalurus_punctatus
ENSORLG00000017479pabpc49991.049ENSSTOG00000010416PABPC49991.049Ictidomys_tridecemlineatus
ENSORLG00000017479pabpc49988.580ENSJJAG00000007781Pabpc49988.580Jaculus_jaculus
ENSORLG00000017479pabpc49997.531ENSKMAG00000013597pabpc49997.531Kryptolebias_marmoratus
ENSORLG00000017479pabpc410095.385ENSLBEG00000013654pabpc49895.385Labrus_bergylta
ENSORLG00000017479pabpc49992.593ENSLACG00000011907PABPC49992.593Latimeria_chalumnae
ENSORLG00000017479pabpc49995.077ENSLOCG00000001877pabpc49995.077Lepisosteus_oculatus
ENSORLG00000017479pabpc49991.049ENSLAFG00000000151PABPC49991.049Loxodonta_africana
ENSORLG00000017479pabpc49991.049ENSMFAG00000041481PABPC49991.049Macaca_fascicularis
ENSORLG00000017479pabpc49991.049ENSMMUG00000007497PABPC49991.049Macaca_mulatta
ENSORLG00000017479pabpc49991.049ENSMNEG00000043054PABPC49991.049Macaca_nemestrina
ENSORLG00000017479pabpc49991.049ENSMLEG00000040716PABPC49991.049Mandrillus_leucophaeus
ENSORLG00000017479pabpc49896.296ENSMAMG00000010025pabpc49996.296Mastacembelus_armatus
ENSORLG00000017479pabpc49996.914ENSMZEG00005006141pabpc410096.914Maylandia_zebra
ENSORLG00000017479pabpc49893.462ENSMGAG00000005408PABPC49993.462Meleagris_gallopavo
ENSORLG00000017479pabpc45780.117ENSMAUG00000004089-9280.117Mesocricetus_auratus
ENSORLG00000017479pabpc47279.048ENSMAUG00000001295-9778.947Mesocricetus_auratus
ENSORLG00000017479pabpc47688.542ENSMAUG00000019763-8288.660Mesocricetus_auratus
ENSORLG00000017479pabpc49881.423ENSMICG00000036729-9981.423Microcebus_murinus
ENSORLG00000017479pabpc48691.049ENSMICG00000016633-10091.049Microcebus_murinus
ENSORLG00000017479pabpc49790.432ENSMOCG00000006763Pabpc49990.432Microtus_ochrogaster
ENSORLG00000017479pabpc49996.914ENSMMOG00000002363pabpc49996.914Mola_mola
ENSORLG00000017479pabpc45970.933ENSMODG00000018051-9670.933Monodelphis_domestica
ENSORLG00000017479pabpc45581.633ENSMODG00000019847-6781.633Monodelphis_domestica
ENSORLG00000017479pabpc49693.231ENSMODG00000017657-9993.519Monodelphis_domestica
ENSORLG00000017479pabpc49896.308ENSMALG00000011017pabpc49996.605Monopterus_albus
ENSORLG00000017479pabpc49990.123MGP_CAROLIEiJ_G0026435-10096.454Mus_caroli
ENSORLG00000017479pabpc48288.142MGP_CAROLIEiJ_G0024864-9988.142Mus_caroli
ENSORLG00000017479pabpc49990.741ENSMUSG00000011257Pabpc410094.643Mus_musculus
ENSORLG00000017479pabpc49891.746MGP_PahariEiJ_G0028765Pabpc410097.163Mus_pahari
ENSORLG00000017479pabpc49874.848MGP_SPRETEiJ_G0027415Pabpc410097.163Mus_spretus
ENSORLG00000017479pabpc49349.211ENSMPUG00000006836-10049.211Mustela_putorius_furo
ENSORLG00000017479pabpc49991.049ENSMPUG00000014414-9991.049Mustela_putorius_furo
ENSORLG00000017479pabpc49990.741ENSMLUG00000012068PABPC49990.741Myotis_lucifugus
ENSORLG00000017479pabpc49991.049ENSNGAG00000018292Pabpc49991.049Nannospalax_galili
ENSORLG00000017479pabpc46097.115ENSNBRG00000009708pabpc49897.115Neolamprologus_brichardi
ENSORLG00000017479pabpc46596.386ENSNBRG00000010047-7296.386Neolamprologus_brichardi
ENSORLG00000017479pabpc49991.049ENSNLEG00000011928PABPC49991.049Nomascus_leucogenys
ENSORLG00000017479pabpc48593.651ENSOPRG00000011984PABPC48693.651Ochotona_princeps
ENSORLG00000017479pabpc49991.049ENSODEG00000006592-9991.049Octodon_degus
ENSORLG00000017479pabpc49886.093ENSODEG00000017434-9986.093Octodon_degus
ENSORLG00000017479pabpc45382.857ENSODEG00000013457-10082.857Octodon_degus
ENSORLG00000017479pabpc49997.222ENSONIG00000008176pabpc49997.222Oreochromis_niloticus
ENSORLG00000017479pabpc49992.901ENSOANG00000010001PABPC49992.901Ornithorhynchus_anatinus
ENSORLG00000017479pabpc49490.741ENSOCUG00000000562PABPC48890.741Oryctolagus_cuniculus
ENSORLG00000017479pabpc4100100.000ENSORLG00020018644pabpc4100100.000Oryzias_latipes_hni
ENSORLG00000017479pabpc410098.887ENSORLG00015015042pabpc410098.887Oryzias_latipes_hsok
ENSORLG00000017479pabpc49899.383ENSOMEG00000014410pabpc49999.383Oryzias_melastigma
ENSORLG00000017479pabpc49991.049ENSOGAG00000004067PABPC49991.049Otolemur_garnettii
ENSORLG00000017479pabpc49991.049ENSOARG00000020060PABPC49991.049Ovis_aries
ENSORLG00000017479pabpc49990.741ENSPPAG00000043625PABPC49990.741Pan_paniscus
ENSORLG00000017479pabpc49991.049ENSPPRG00000024727PABPC49991.049Panthera_pardus
ENSORLG00000017479pabpc49991.049ENSPTIG00000005829PABPC49991.049Panthera_tigris_altaica
ENSORLG00000017479pabpc49990.741ENSPTRG00000000573PABPC49990.741Pan_troglodytes
ENSORLG00000017479pabpc49991.049ENSPANG00000009484PABPC49991.049Papio_anubis
ENSORLG00000017479pabpc49994.769ENSPKIG00000025356pabpc49994.769Paramormyrops_kingsleyae
ENSORLG00000017479pabpc49993.827ENSPSIG00000016892PABPC49993.827Pelodiscus_sinensis
ENSORLG00000017479pabpc49996.914ENSPMGG00000009073pabpc49996.914Periophthalmus_magnuspinnatus
ENSORLG00000017479pabpc49990.741ENSPEMG00000023569-9990.741Peromyscus_maniculatus_bairdii
ENSORLG00000017479pabpc49987.346ENSPEMG00000024193-9987.346Peromyscus_maniculatus_bairdii
ENSORLG00000017479pabpc48684.756ENSPMAG00000002836pabpc410085.015Petromyzon_marinus
ENSORLG00000017479pabpc49574.160ENSPMAG00000007885pabpc49973.101Petromyzon_marinus
ENSORLG00000017479pabpc49694.136ENSPCIG00000020674PABPC49994.983Phascolarctos_cinereus
ENSORLG00000017479pabpc49997.531ENSPFOG00000002682pabpc49997.531Poecilia_formosa
ENSORLG00000017479pabpc49997.531ENSPLAG00000010112pabpc49997.531Poecilia_latipinna
ENSORLG00000017479pabpc49797.531ENSPMEG00000019739pabpc49997.531Poecilia_mexicana
ENSORLG00000017479pabpc49997.531ENSPREG00000001589pabpc49997.531Poecilia_reticulata
ENSORLG00000017479pabpc49990.741ENSPPYG00000001506PABPC49990.741Pongo_abelii
ENSORLG00000017479pabpc49990.068ENSPCAG00000003341PABPC49990.068Procavia_capensis
ENSORLG00000017479pabpc49871.146ENSPCOG00000025882-9581.250Propithecus_coquereli
ENSORLG00000017479pabpc49991.049ENSPCOG00000023725-9991.049Propithecus_coquereli
ENSORLG00000017479pabpc49791.120ENSPVAG00000002187PABPC49991.120Pteropus_vampyrus
ENSORLG00000017479pabpc49997.222ENSPNYG00000006134pabpc49997.222Pundamilia_nyererei
ENSORLG00000017479pabpc49994.769ENSPNAG00000024355pabpc49994.769Pygocentrus_nattereri
ENSORLG00000017479pabpc49987.037ENSRNOG00000028592AABR07035074.19987.037Rattus_norvegicus
ENSORLG00000017479pabpc49990.432ENSRNOG00000015642Pabpc49990.432Rattus_norvegicus
ENSORLG00000017479pabpc49991.049ENSRBIG00000039761PABPC49991.049Rhinopithecus_bieti
ENSORLG00000017479pabpc49991.049ENSRROG00000033355PABPC49991.049Rhinopithecus_roxellana
ENSORLG00000017479pabpc49990.741ENSSBOG00000026193PABPC49990.741Saimiri_boliviensis_boliviensis
ENSORLG00000017479pabpc49693.846ENSSHAG00000018139PABPC49994.136Sarcophilus_harrisii
ENSORLG00000017479pabpc49894.983ENSSFOG00015023514pabpc49994.983Scleropages_formosus
ENSORLG00000017479pabpc49996.296ENSSMAG00000009007pabpc49996.296Scophthalmus_maximus
ENSORLG00000017479pabpc49896.605ENSSDUG00000012683pabpc49996.605Seriola_dumerili
ENSORLG00000017479pabpc49896.605ENSSLDG00000013025pabpc49996.605Seriola_lalandi_dorsalis
ENSORLG00000017479pabpc49978.395ENSSARG00000000310PABPC49978.395Sorex_araneus
ENSORLG00000017479pabpc49993.210ENSSPUG00000003204PABPC49993.210Sphenodon_punctatus
ENSORLG00000017479pabpc49896.605ENSSPAG00000009252pabpc49996.605Stegastes_partitus
ENSORLG00000017479pabpc48944.779ENSSSCG00000036170-9544.865Sus_scrofa
ENSORLG00000017479pabpc49991.049ENSSSCG00000003660-9991.049Sus_scrofa
ENSORLG00000017479pabpc49992.901ENSTGUG00000001266PABPC49992.901Taeniopygia_guttata
ENSORLG00000017479pabpc49995.370ENSTRUG00000005907pabpc49995.370Takifugu_rubripes
ENSORLG00000017479pabpc49995.385ENSTNIG00000016902pabpc49995.679Tetraodon_nigroviridis
ENSORLG00000017479pabpc49868.340ENSTBEG00000009035PABPC49968.340Tupaia_belangeri
ENSORLG00000017479pabpc49858.377ENSTTRG00000014340PABPC49967.395Tursiops_truncatus
ENSORLG00000017479pabpc49991.049ENSUAMG00000000303PABPC49991.049Ursus_americanus
ENSORLG00000017479pabpc49991.049ENSUMAG00000019585PABPC49991.084Ursus_maritimus
ENSORLG00000017479pabpc47968.634ENSVPAG00000010041PABPC47369.912Vicugna_pacos
ENSORLG00000017479pabpc49991.049ENSVVUG00000005215PABPC49991.049Vulpes_vulpes
ENSORLG00000017479pabpc46796.429ENSXETG00000027221-10096.429Xenopus_tropicalis
ENSORLG00000017479pabpc49986.769ENSXETG00000010946pabpc49987.037Xenopus_tropicalis
ENSORLG00000017479pabpc49895.785ENSXCOG00000013190pabpc49695.283Xiphophorus_couchianus
ENSORLG00000017479pabpc49997.222ENSXMAG00000019007pabpc49997.222Xiphophorus_maculatus

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