EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000017629 (Gene tree)
Gene ID: 101157731
Gene Symbol: thoc1
Alias: -
Full Name: THO complex 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 4536 bases
Position: chr17:28357711-28362246
Accession: 101157731
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000022056	efThoc1	PF11957.8	1.6e-142	1	1
ENSORLP00000026116	efThoc1	PF11957.8	6.7e-141	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000022057	-	2043	XM_004079415	ENSORLP00000022056	654 (aa)	XP_004079463	H2MTF7
ENSORLT00000027808	-	1944	-	ENSORLP00000026116	647 (aa)	-	-

Gene Model

Click here to download ENSORLG00000017629's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03013	RNA transport	KEGG
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000017629's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000017629	thoc1	99	72.239	ENSG00000079134	THOC1	99	77.574	Homo_sapiens
ENSORLG00000017629	thoc1	99	72.239	ENSAMEG00000006645	THOC1	98	72.239	Ailuropoda_melanoleuca
ENSORLG00000017629	thoc1	94	90.507	ENSACIG00000019392	thoc1	95	90.507	Amphilophus_citrinellus
ENSORLG00000017629	thoc1	100	87.615	ENSAOCG00000008391	thoc1	100	87.615	Amphiprion_ocellaris
ENSORLG00000017629	thoc1	100	93.425	ENSAPEG00000001093	thoc1	100	93.425	Amphiprion_percula
ENSORLG00000017629	thoc1	100	93.119	ENSATEG00000004783	thoc1	100	93.119	Anabas_testudineus
ENSORLG00000017629	thoc1	99	71.865	ENSAPLG00000016149	THOC1	98	71.865	Anas_platyrhynchos
ENSORLG00000017629	thoc1	99	71.994	ENSACAG00000008307	THOC1	97	71.385	Anolis_carolinensis
ENSORLG00000017629	thoc1	99	71.624	ENSANAG00000033200	THOC1	98	71.624	Aotus_nancymaae
ENSORLG00000017629	thoc1	100	92.049	ENSACLG00000016836	thoc1	100	92.049	Astatotilapia_calliptera
ENSORLG00000017629	thoc1	94	77.010	ENSAMXG00000014708	thoc1	98	76.688	Astyanax_mexicanus
ENSORLG00000017629	thoc1	99	72.393	ENSBTAG00000019215	THOC1	98	72.393	Bos_taurus
ENSORLG00000017629	thoc1	69	35.622	WBGene00020172	thoc-1	69	35.470	Caenorhabditis_elegans
ENSORLG00000017629	thoc1	99	72.393	ENSCJAG00000020450	THOC1	98	72.393	Callithrix_jacchus
ENSORLG00000017629	thoc1	99	72.239	ENSCAFG00000018324	THOC1	98	72.239	Canis_familiaris
ENSORLG00000017629	thoc1	99	72.239	ENSCAFG00020017894	THOC1	98	72.239	Canis_lupus_dingo
ENSORLG00000017629	thoc1	99	72.393	ENSCHIG00000015399	THOC1	98	73.428	Capra_hircus
ENSORLG00000017629	thoc1	99	71.933	ENSTSYG00000010585	THOC1	98	71.933	Carlito_syrichta
ENSORLG00000017629	thoc1	97	52.877	ENSCAPG00000016270	THOC1	97	52.877	Cavia_aperea
ENSORLG00000017629	thoc1	99	71.166	ENSCPOG00000000959	THOC1	98	71.166	Cavia_porcellus
ENSORLG00000017629	thoc1	99	72.393	ENSCCAG00000025766	THOC1	98	72.393	Cebus_capucinus
ENSORLG00000017629	thoc1	99	70.245	ENSCATG00000028180	THOC1	96	77.168	Cercocebus_atys
ENSORLG00000017629	thoc1	97	72.956	ENSCLAG00000009117	THOC1	99	72.956	Chinchilla_lanigera
ENSORLG00000017629	thoc1	99	72.393	ENSCSAG00000017631	THOC1	98	72.393	Chlorocebus_sabaeus
ENSORLG00000017629	thoc1	79	76.349	ENSCHOG00000010609	THOC1	78	75.519	Choloepus_hoffmanni
ENSORLG00000017629	thoc1	99	73.047	ENSCPBG00000027558	THOC1	99	73.047	Chrysemys_picta_bellii
ENSORLG00000017629	thoc1	70	49.467	ENSCING00000007663	-	93	49.036	Ciona_intestinalis
ENSORLG00000017629	thoc1	94	47.627	ENSCSAVG00000010649	-	99	47.536	Ciona_savignyi
ENSORLG00000017629	thoc1	99	72.239	ENSCANG00000034265	THOC1	96	77.778	Colobus_angolensis_palliatus
ENSORLG00000017629	thoc1	99	71.166	ENSCGRG00001016464	Thoc1	98	71.166	Cricetulus_griseus_chok1gshd
ENSORLG00000017629	thoc1	90	59.014	ENSCGRG00000003390	-	97	58.844	Cricetulus_griseus_crigri
ENSORLG00000017629	thoc1	98	71.875	ENSCGRG00000010269	-	99	72.170	Cricetulus_griseus_crigri
ENSORLG00000017629	thoc1	99	88.146	ENSCSEG00000012486	thoc1	99	88.907	Cynoglossus_semilaevis
ENSORLG00000017629	thoc1	100	90.979	ENSCVAG00000020600	thoc1	100	90.979	Cyprinodon_variegatus
ENSORLG00000017629	thoc1	99	84.356	ENSDARG00000088246	thoc1	99	84.356	Danio_rerio
ENSORLG00000017629	thoc1	99	71.889	ENSDNOG00000019217	THOC1	98	71.889	Dasypus_novemcinctus
ENSORLG00000017629	thoc1	97	69.497	ENSDORG00000008060	Thoc1	98	69.340	Dipodomys_ordii
ENSORLG00000017629	thoc1	82	42.703	FBgn0037382	Hpr1	75	42.162	Drosophila_melanogaster
ENSORLG00000017629	thoc1	90	54.839	ENSETEG00000004165	THOC1	98	54.160	Echinops_telfairi
ENSORLG00000017629	thoc1	92	63.773	ENSEBUG00000005998	thoc1	97	64.441	Eptatretus_burgeri
ENSORLG00000017629	thoc1	99	72.086	ENSEASG00005002549	THOC1	94	72.086	Equus_asinus_asinus
ENSORLG00000017629	thoc1	99	72.239	ENSECAG00000009267	THOC1	88	72.239	Equus_caballus
ENSORLG00000017629	thoc1	79	56.738	ENSEEUG00000012214	-	81	56.738	Erinaceus_europaeus
ENSORLG00000017629	thoc1	100	86.149	ENSELUG00000023277	thoc1	100	86.149	Esox_lucius
ENSORLG00000017629	thoc1	99	72.393	ENSFCAG00000022454	THOC1	85	72.393	Felis_catus
ENSORLG00000017629	thoc1	97	73.354	ENSFALG00000006205	THOC1	98	73.354	Ficedula_albicollis
ENSORLG00000017629	thoc1	98	72.205	ENSFDAG00000006842	THOC1	99	72.205	Fukomys_damarensis
ENSORLG00000017629	thoc1	100	91.131	ENSFHEG00000008841	thoc1	100	91.131	Fundulus_heteroclitus
ENSORLG00000017629	thoc1	99	88.190	ENSGMOG00000011486	thoc1	99	88.190	Gadus_morhua
ENSORLG00000017629	thoc1	99	72.435	ENSGALG00000014915	THOC1	99	71.558	Gallus_gallus
ENSORLG00000017629	thoc1	100	89.602	ENSGAFG00000021464	thoc1	100	89.602	Gambusia_affinis
ENSORLG00000017629	thoc1	100	91.743	ENSGACG00000017361	thoc1	100	91.743	Gasterosteus_aculeatus
ENSORLG00000017629	thoc1	99	73.660	ENSGAGG00000021230	-	97	73.660	Gopherus_agassizii
ENSORLG00000017629	thoc1	99	72.393	ENSGGOG00000003013	THOC1	98	72.393	Gorilla_gorilla
ENSORLG00000017629	thoc1	100	92.355	ENSHBUG00000009096	thoc1	100	92.355	Haplochromis_burtoni
ENSORLG00000017629	thoc1	99	72.393	ENSHGLG00000003712	-	98	72.393	Heterocephalus_glaber_female
ENSORLG00000017629	thoc1	71	65.789	ENSHGLG00000009264	-	98	65.789	Heterocephalus_glaber_female
ENSORLG00000017629	thoc1	99	72.239	ENSHGLG00100003570	THOC1	98	72.239	Heterocephalus_glaber_male
ENSORLG00000017629	thoc1	77	58.201	ENSHGLG00100002225	-	98	64.398	Heterocephalus_glaber_male
ENSORLG00000017629	thoc1	99	71.831	ENSIPUG00000005306	thoc1	100	70.579	Ictalurus_punctatus
ENSORLG00000017629	thoc1	99	71.933	ENSSTOG00000006484	THOC1	98	71.933	Ictidomys_tridecemlineatus
ENSORLG00000017629	thoc1	52	72.965	ENSJJAG00000014893	-	96	72.965	Jaculus_jaculus
ENSORLG00000017629	thoc1	100	91.743	ENSKMAG00000003904	thoc1	100	91.743	Kryptolebias_marmoratus
ENSORLG00000017629	thoc1	100	91.437	ENSLBEG00000020372	thoc1	98	91.437	Labrus_bergylta
ENSORLG00000017629	thoc1	99	73.354	ENSLACG00000014869	THOC1	99	73.047	Latimeria_chalumnae
ENSORLG00000017629	thoc1	100	82.801	ENSLOCG00000002097	thoc1	99	82.496	Lepisosteus_oculatus
ENSORLG00000017629	thoc1	99	72.086	ENSLAFG00000009585	THOC1	98	72.086	Loxodonta_africana
ENSORLG00000017629	thoc1	99	72.393	ENSMFAG00000041520	THOC1	98	72.393	Macaca_fascicularis
ENSORLG00000017629	thoc1	99	72.393	ENSMMUG00000004662	THOC1	98	72.393	Macaca_mulatta
ENSORLG00000017629	thoc1	99	72.393	ENSMNEG00000040177	THOC1	98	72.393	Macaca_nemestrina
ENSORLG00000017629	thoc1	99	72.393	ENSMLEG00000034201	THOC1	98	72.393	Mandrillus_leucophaeus
ENSORLG00000017629	thoc1	96	88.836	ENSMAMG00000016747	thoc1	100	88.836	Mastacembelus_armatus
ENSORLG00000017629	thoc1	100	92.049	ENSMZEG00005024609	thoc1	100	92.049	Maylandia_zebra
ENSORLG00000017629	thoc1	97	72.770	ENSMGAG00000009811	THOC1	99	72.770	Meleagris_gallopavo
ENSORLG00000017629	thoc1	99	71.012	ENSMAUG00000010272	Thoc1	98	71.012	Mesocricetus_auratus
ENSORLG00000017629	thoc1	99	72.239	ENSMICG00000027200	THOC1	98	72.239	Microcebus_murinus
ENSORLG00000017629	thoc1	99	70.245	ENSMOCG00000014536	-	85	70.245	Microtus_ochrogaster
ENSORLG00000017629	thoc1	99	62.423	ENSMOCG00000014924	-	95	61.810	Microtus_ochrogaster
ENSORLG00000017629	thoc1	93	91.503	ENSMMOG00000011772	thoc1	100	91.503	Mola_mola
ENSORLG00000017629	thoc1	99	71.277	ENSMODG00000021482	THOC1	98	71.277	Monodelphis_domestica
ENSORLG00000017629	thoc1	100	90.214	ENSMALG00000021872	thoc1	100	90.214	Monopterus_albus
ENSORLG00000017629	thoc1	99	71.319	MGP_CAROLIEiJ_G0021989	Thoc1	98	71.319	Mus_caroli
ENSORLG00000017629	thoc1	99	71.166	ENSMUSG00000024287	Thoc1	98	71.166	Mus_musculus
ENSORLG00000017629	thoc1	99	71.166	MGP_PahariEiJ_G0018726	Thoc1	98	71.166	Mus_pahari
ENSORLG00000017629	thoc1	99	71.166	MGP_SPRETEiJ_G0022905	Thoc1	98	71.166	Mus_spretus
ENSORLG00000017629	thoc1	99	72.239	ENSMPUG00000005448	THOC1	98	72.239	Mustela_putorius_furo
ENSORLG00000017629	thoc1	61	65.414	ENSMLUG00000024912	-	100	65.414	Myotis_lucifugus
ENSORLG00000017629	thoc1	90	66.443	ENSMLUG00000027965	-	99	66.443	Myotis_lucifugus
ENSORLG00000017629	thoc1	99	71.166	ENSMLUG00000004090	-	98	71.166	Myotis_lucifugus
ENSORLG00000017629	thoc1	97	58.095	ENSNGAG00000008061	-	97	58.095	Nannospalax_galili
ENSORLG00000017629	thoc1	99	71.933	ENSNGAG00000001401	-	98	71.933	Nannospalax_galili
ENSORLG00000017629	thoc1	98	90.491	ENSNBRG00000005991	thoc1	97	90.491	Neolamprologus_brichardi
ENSORLG00000017629	thoc1	99	72.393	ENSNLEG00000006835	THOC1	98	72.393	Nomascus_leucogenys
ENSORLG00000017629	thoc1	89	76.231	ENSMEUG00000009756	THOC1	82	76.231	Notamacropus_eugenii
ENSORLG00000017629	thoc1	99	58.308	ENSOPRG00000001108	THOC1	98	58.308	Ochotona_princeps
ENSORLG00000017629	thoc1	99	66.871	ENSODEG00000006623	THOC1	98	66.871	Octodon_degus
ENSORLG00000017629	thoc1	100	92.049	ENSONIG00000009440	thoc1	98	92.012	Oreochromis_niloticus
ENSORLG00000017629	thoc1	99	72.239	ENSOCUG00000011601	THOC1	98	72.239	Oryctolagus_cuniculus
ENSORLG00000017629	thoc1	100	99.847	ENSORLG00020007567	thoc1	100	99.847	Oryzias_latipes_hni
ENSORLG00000017629	thoc1	100	99.694	ENSORLG00015007356	thoc1	100	99.694	Oryzias_latipes_hsok
ENSORLG00000017629	thoc1	100	97.095	ENSOMEG00000008200	thoc1	100	97.095	Oryzias_melastigma
ENSORLG00000017629	thoc1	99	69.018	ENSOGAG00000000470	THOC1	98	69.018	Otolemur_garnettii
ENSORLG00000017629	thoc1	98	73.239	ENSOARG00000009238	THOC1	96	73.239	Ovis_aries
ENSORLG00000017629	thoc1	99	72.393	ENSPPAG00000031812	THOC1	98	72.393	Pan_paniscus
ENSORLG00000017629	thoc1	99	71.779	ENSPPRG00000023794	THOC1	96	76.879	Panthera_pardus
ENSORLG00000017629	thoc1	99	71.779	ENSPTIG00000007469	THOC1	96	76.879	Panthera_tigris_altaica
ENSORLG00000017629	thoc1	99	71.472	ENSPTRG00000009816	THOC1	98	71.472	Pan_troglodytes
ENSORLG00000017629	thoc1	99	71.494	ENSPANG00000008665	THOC1	98	71.494	Papio_anubis
ENSORLG00000017629	thoc1	100	82.595	ENSPKIG00000005906	thoc1	100	83.206	Paramormyrops_kingsleyae
ENSORLG00000017629	thoc1	81	75.758	ENSPSIG00000007691	THOC1	97	75.758	Pelodiscus_sinensis
ENSORLG00000017629	thoc1	94	85.668	ENSPMGG00000008279	thoc1	95	85.668	Periophthalmus_magnuspinnatus
ENSORLG00000017629	thoc1	99	71.012	ENSPEMG00000021789	Thoc1	98	71.012	Peromyscus_maniculatus_bairdii
ENSORLG00000017629	thoc1	74	71.837	ENSPCIG00000026942	THOC1	97	71.837	Phascolarctos_cinereus
ENSORLG00000017629	thoc1	100	89.450	ENSPFOG00000011673	thoc1	100	89.450	Poecilia_formosa
ENSORLG00000017629	thoc1	100	89.755	ENSPLAG00000019648	thoc1	100	89.755	Poecilia_latipinna
ENSORLG00000017629	thoc1	100	89.602	ENSPMEG00000007083	thoc1	100	89.602	Poecilia_mexicana
ENSORLG00000017629	thoc1	100	89.908	ENSPREG00000006719	thoc1	100	89.908	Poecilia_reticulata
ENSORLG00000017629	thoc1	74	75.926	ENSPPYG00000009049	-	98	75.926	Pongo_abelii
ENSORLG00000017629	thoc1	91	73.499	ENSPCAG00000005320	THOC1	91	73.499	Procavia_capensis
ENSORLG00000017629	thoc1	99	71.779	ENSPCOG00000009234	THOC1	98	71.779	Propithecus_coquereli
ENSORLG00000017629	thoc1	99	70.552	ENSPVAG00000004007	THOC1	98	70.552	Pteropus_vampyrus
ENSORLG00000017629	thoc1	100	92.355	ENSPNYG00000019152	thoc1	100	92.355	Pundamilia_nyererei
ENSORLG00000017629	thoc1	100	83.486	ENSPNAG00000023390	thoc1	99	83.308	Pygocentrus_nattereri
ENSORLG00000017629	thoc1	90	50.508	ENSRNOG00000015332	Thoc1	96	47.899	Rattus_norvegicus
ENSORLG00000017629	thoc1	99	71.624	ENSRBIG00000033738	THOC1	99	74.350	Rhinopithecus_bieti
ENSORLG00000017629	thoc1	99	72.393	ENSRROG00000044988	THOC1	96	77.778	Rhinopithecus_roxellana
ENSORLG00000017629	thoc1	99	72.393	ENSSBOG00000016556	THOC1	98	72.393	Saimiri_boliviensis_boliviensis
ENSORLG00000017629	thoc1	99	72.239	ENSSHAG00000014829	THOC1	98	72.239	Sarcophilus_harrisii
ENSORLG00000017629	thoc1	100	86.239	ENSSFOG00015021527	thoc1	100	86.239	Scleropages_formosus
ENSORLG00000017629	thoc1	100	89.297	ENSSMAG00000018465	thoc1	99	89.297	Scophthalmus_maximus
ENSORLG00000017629	thoc1	100	93.119	ENSSDUG00000016810	thoc1	100	93.119	Seriola_dumerili
ENSORLG00000017629	thoc1	100	93.119	ENSSLDG00000015555	thoc1	100	93.119	Seriola_lalandi_dorsalis
ENSORLG00000017629	thoc1	86	73.307	ENSSARG00000006910	THOC1	85	73.307	Sorex_araneus
ENSORLG00000017629	thoc1	98	72.943	ENSSPUG00000007238	THOC1	98	72.162	Sphenodon_punctatus
ENSORLG00000017629	thoc1	100	87.652	ENSSPAG00000018847	thoc1	99	87.652	Stegastes_partitus
ENSORLG00000017629	thoc1	99	72.239	ENSSSCG00000025653	THOC1	93	72.239	Sus_scrofa
ENSORLG00000017629	thoc1	99	72.741	ENSTGUG00000010204	THOC1	99	72.741	Taeniopygia_guttata
ENSORLG00000017629	thoc1	100	89.908	ENSTRUG00000013518	thoc1	100	89.908	Takifugu_rubripes
ENSORLG00000017629	thoc1	100	89.144	ENSTNIG00000008473	thoc1	99	89.144	Tetraodon_nigroviridis
ENSORLG00000017629	thoc1	99	65.031	ENSTBEG00000016920	THOC1	98	65.031	Tupaia_belangeri
ENSORLG00000017629	thoc1	99	66.104	ENSTTRG00000016664	THOC1	98	66.104	Tursiops_truncatus
ENSORLG00000017629	thoc1	99	72.393	ENSUAMG00000002527	THOC1	98	73.083	Ursus_americanus
ENSORLG00000017629	thoc1	99	72.393	ENSUMAG00000019693	THOC1	98	72.393	Ursus_maritimus
ENSORLG00000017629	thoc1	67	66.805	ENSVPAG00000003726	-	66	66.805	Vicugna_pacos
ENSORLG00000017629	thoc1	99	72.239	ENSVVUG00000004384	THOC1	98	72.239	Vulpes_vulpes
ENSORLG00000017629	thoc1	99	70.213	ENSXETG00000003155	thoc1	97	70.213	Xenopus_tropicalis
ENSORLG00000017629	thoc1	94	84.528	ENSXCOG00000016085	thoc1	89	84.528	Xiphophorus_couchianus
ENSORLG00000017629	thoc1	100	89.908	ENSXMAG00000002353	thoc1	100	89.908	Xiphophorus_maculatus