EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSORLG00000018854 (Gene tree)
Gene ID
101164375
Gene Symbol
cpsf3
Alias
-
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Oryzias_latipes
Status
putative
Strand
Minus strand
Length
8922 bases
Position
chr24:22747682-22756603
Accession
101164375
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00000023537CPSF73-100_CPF11718.89.6e-5111
ENSORLP00000023537Beta-CaspPF10996.81.3e-3311
ENSORLP00000023537Lactamase_BPF00753.273.5e-1811
ENSORLP00000023537RMMBLPF07521.122e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00000023538-2201XM_004085455ENSORLP00000023537686 (aa)XP_004085503H2MX86
Gene Model
Click here to download ENSORLG00000018854's gene model file
Pathways
Pathway IDPathway NameSource
ola03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000018854's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSORLG00000018854cpsf36539.207ENSORLG00000015957ints117439.207
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00000018854cpsf39983.554ENSG00000119203CPSF310097.059Homo_sapiens
ENSORLG00000018854cpsf37496.055ENSAPOG00000012241CPSF39196.055Acanthochromis_polyacanthus
ENSORLG00000018854cpsf310092.857ENSAPOG00000022087cpsf310092.857Acanthochromis_polyacanthus
ENSORLG00000018854cpsf39983.700ENSAMEG00000008493CPSF39983.700Ailuropoda_melanoleuca
ENSORLG00000018854cpsf39184.579ENSACIG00000023663CPSF39978.374Amphilophus_citrinellus
ENSORLG00000018854cpsf39187.639ENSACIG00000009846cpsf310081.214Amphilophus_citrinellus
ENSORLG00000018854cpsf39986.483ENSAOCG00000010077CPSF39986.483Amphiprion_ocellaris
ENSORLG00000018854cpsf310093.003ENSAOCG00000022056cpsf310093.003Amphiprion_ocellaris
ENSORLG00000018854cpsf310092.857ENSAPEG00000019526cpsf310092.857Amphiprion_percula
ENSORLG00000018854cpsf39986.483ENSAPEG00000021167CPSF39986.483Amphiprion_percula
ENSORLG00000018854cpsf39982.413ENSATEG00000014525CPSF39982.413Anabas_testudineus
ENSORLG00000018854cpsf39991.959ENSATEG00000003959cpsf39991.959Anabas_testudineus
ENSORLG00000018854cpsf39783.134ENSAPLG00000006941CPSF39883.134Anas_platyrhynchos
ENSORLG00000018854cpsf39281.861ENSACAG00000001759CPSF39981.861Anolis_carolinensis
ENSORLG00000018854cpsf39978.708ENSANAG00000031254CPSF39979.279Aotus_nancymaae
ENSORLG00000018854cpsf39792.447ENSACLG00000014484cpsf39992.447Astatotilapia_calliptera
ENSORLG00000018854cpsf39184.897ENSACLG00000018846CPSF39984.897Astatotilapia_calliptera
ENSORLG00000018854cpsf39985.756ENSAMXG00000004786cpsf39985.756Astyanax_mexicanus
ENSORLG00000018854cpsf39983.700ENSBTAG00000019735CPSF39983.700Bos_taurus
ENSORLG00000018854cpsf39056.940WBGene00013460cpsf-38956.940Caenorhabditis_elegans
ENSORLG00000018854cpsf39983.407ENSCJAG00000006276CPSF39983.407Callithrix_jacchus
ENSORLG00000018854cpsf39983.140ENSCAFG00000003375CPSF39683.140Canis_familiaris
ENSORLG00000018854cpsf39086.570ENSCAFG00020026799CPSF39986.570Canis_lupus_dingo
ENSORLG00000018854cpsf39983.700ENSCHIG00000013973CPSF39983.700Capra_hircus
ENSORLG00000018854cpsf39983.554ENSTSYG00000002967CPSF39983.554Carlito_syrichta
ENSORLG00000018854cpsf39683.759ENSCAPG00000013851CPSF39983.759Cavia_aperea
ENSORLG00000018854cpsf39983.700ENSCPOG00000011299CPSF39983.700Cavia_porcellus
ENSORLG00000018854cpsf39983.407ENSCCAG00000036730CPSF39983.483Cebus_capucinus
ENSORLG00000018854cpsf39982.232ENSCATG00000014770CPSF39989.483Cercocebus_atys
ENSORLG00000018854cpsf39983.700ENSCLAG00000002727CPSF39983.700Chinchilla_lanigera
ENSORLG00000018854cpsf39975.624ENSCSAG00000007125CPSF39975.624Chlorocebus_sabaeus
ENSORLG00000018854cpsf385100.000ENSCHOG00000000180CPSF38559.507Choloepus_hoffmanni
ENSORLG00000018854cpsf39983.454ENSCPBG00000014074CPSF39983.454Chrysemys_picta_bellii
ENSORLG00000018854cpsf39867.695ENSCING00000007214-9867.695Ciona_intestinalis
ENSORLG00000018854cpsf39974.853ENSCANG00000034435CPSF39974.853Colobus_angolensis_palliatus
ENSORLG00000018854cpsf39983.407ENSCGRG00001013134Cpsf39983.407Cricetulus_griseus_chok1gshd
ENSORLG00000018854cpsf39983.407ENSCGRG00000018319Cpsf39983.407Cricetulus_griseus_crigri
ENSORLG00000018854cpsf39985.486ENSCSEG00000002021CPSF39985.486Cynoglossus_semilaevis
ENSORLG00000018854cpsf39987.209ENSCVAG00000015067CPSF39987.209Cyprinodon_variegatus
ENSORLG00000018854cpsf310085.072ENSDARG00000027649cpsf310085.072Danio_rerio
ENSORLG00000018854cpsf39982.551ENSDNOG00000008940CPSF39582.551Dasypus_novemcinctus
ENSORLG00000018854cpsf39585.077ENSDORG00000014263Cpsf39985.077Dipodomys_ordii
ENSORLG00000018854cpsf39966.520FBgn0261065Cpsf739966.520Drosophila_melanogaster
ENSORLG00000018854cpsf39573.077ENSETEG00000003893CPSF39973.077Echinops_telfairi
ENSORLG00000018854cpsf39974.153ENSEBUG00000009018cpsf39974.153Eptatretus_burgeri
ENSORLG00000018854cpsf39983.700ENSEASG00005003970CPSF39983.700Equus_asinus_asinus
ENSORLG00000018854cpsf39983.700ENSECAG00000019911CPSF39689.057Equus_caballus
ENSORLG00000018854cpsf39969.310ENSEEUG00000015422CPSF39969.310Erinaceus_europaeus
ENSORLG00000018854cpsf39988.244ENSELUG00000013775cpsf39988.244Esox_lucius
ENSORLG00000018854cpsf39983.700ENSFCAG00000007852CPSF39983.700Felis_catus
ENSORLG00000018854cpsf39482.998ENSFALG00000006572CPSF310082.998Ficedula_albicollis
ENSORLG00000018854cpsf39983.260ENSFDAG00000006317CPSF39983.260Fukomys_damarensis
ENSORLG00000018854cpsf35865.366ENSFHEG00000012186CPSF310065.366Fundulus_heteroclitus
ENSORLG00000018854cpsf310092.857ENSFHEG00000014774cpsf310092.857Fundulus_heteroclitus
ENSORLG00000018854cpsf310088.389ENSGMOG00000003157cpsf310088.389Gadus_morhua
ENSORLG00000018854cpsf39983.164ENSGALG00000016424CPSF39983.164Gallus_gallus
ENSORLG00000018854cpsf310087.391ENSGAFG00000008016CPSF310087.391Gambusia_affinis
ENSORLG00000018854cpsf39190.560ENSGAFG00000019449cpsf310083.965Gambusia_affinis
ENSORLG00000018854cpsf36778.587ENSGAGG00000025583CPSF39378.587Gopherus_agassizii
ENSORLG00000018854cpsf39981.466ENSGGOG00000001757CPSF39195.931Gorilla_gorilla
ENSORLG00000018854cpsf35878.272ENSHBUG00000014332CPSF310078.272Haplochromis_burtoni
ENSORLG00000018854cpsf310092.128ENSHBUG00000001188cpsf310092.128Haplochromis_burtoni
ENSORLG00000018854cpsf39983.260ENSHGLG00000000666CPSF39983.260Heterocephalus_glaber_female
ENSORLG00000018854cpsf39983.260ENSHGLG00100007765CPSF39983.260Heterocephalus_glaber_male
ENSORLG00000018854cpsf39991.520ENSHCOG00000007251cpsf39991.520Hippocampus_comes
ENSORLG00000018854cpsf39985.320ENSHCOG00000015957CPSF39985.320Hippocampus_comes
ENSORLG00000018854cpsf39985.901ENSIPUG00000023488cpsf39985.901Ictalurus_punctatus
ENSORLG00000018854cpsf39983.407ENSSTOG00000004476CPSF39983.407Ictidomys_tridecemlineatus
ENSORLG00000018854cpsf39982.945ENSJJAG00000023415Cpsf39982.945Jaculus_jaculus
ENSORLG00000018854cpsf39986.047ENSKMAG00000007317CPSF39986.047Kryptolebias_marmoratus
ENSORLG00000018854cpsf310092.128ENSKMAG00000002806cpsf310092.128Kryptolebias_marmoratus
ENSORLG00000018854cpsf39687.538ENSLBEG00000013492CPSF39987.538Labrus_bergylta
ENSORLG00000018854cpsf35585.067ENSLBEG00000015018-9985.067Labrus_bergylta
ENSORLG00000018854cpsf39983.382ENSLBEG00000020569cpsf39683.382Labrus_bergylta
ENSORLG00000018854cpsf39978.261ENSLACG00000008308CPSF39978.261Latimeria_chalumnae
ENSORLG00000018854cpsf310086.147ENSLOCG00000016823cpsf310086.147Lepisosteus_oculatus
ENSORLG00000018854cpsf39882.891ENSLAFG00000009467CPSF39982.891Loxodonta_africana
ENSORLG00000018854cpsf39983.407ENSMFAG00000001339CPSF39593.154Macaca_fascicularis
ENSORLG00000018854cpsf38789.057ENSMMUG00000018038CPSF39293.154Macaca_mulatta
ENSORLG00000018854cpsf39095.238ENSMNEG00000039447CPSF39995.238Macaca_nemestrina
ENSORLG00000018854cpsf39983.554ENSMLEG00000026825CPSF39395.726Mandrillus_leucophaeus
ENSORLG00000018854cpsf39183.810ENSMAMG00000008835CPSF39977.971Mastacembelus_armatus
ENSORLG00000018854cpsf310090.525ENSMAMG00000003076cpsf310090.525Mastacembelus_armatus
ENSORLG00000018854cpsf39986.773ENSMZEG00005006258CPSF39986.773Maylandia_zebra
ENSORLG00000018854cpsf310092.128ENSMZEG00005014358cpsf310092.128Maylandia_zebra
ENSORLG00000018854cpsf39783.508ENSMGAG00000013995CPSF310083.508Meleagris_gallopavo
ENSORLG00000018854cpsf35472.995ENSMAUG00000000166Cpsf39972.995Mesocricetus_auratus
ENSORLG00000018854cpsf39979.063ENSMICG00000002363CPSF39979.063Microcebus_murinus
ENSORLG00000018854cpsf39980.764ENSMOCG00000020067Cpsf39980.764Microtus_ochrogaster
ENSORLG00000018854cpsf38070.238ENSMMOG00000011923CPSF38476.071Mola_mola
ENSORLG00000018854cpsf39385.023ENSMMOG00000018212CPSF39885.023Mola_mola
ENSORLG00000018854cpsf39982.267ENSMODG00000014703CPSF39982.267Monodelphis_domestica
ENSORLG00000018854cpsf310092.274ENSMALG00000016416cpsf310092.274Monopterus_albus
ENSORLG00000018854cpsf39282.992ENSMALG00000011474CPSF39982.992Monopterus_albus
ENSORLG00000018854cpsf39983.700MGP_CAROLIEiJ_G0017640Cpsf39983.700Mus_caroli
ENSORLG00000018854cpsf39983.700ENSMUSG00000054309Cpsf39696.186Mus_musculus
ENSORLG00000018854cpsf39983.554MGP_PahariEiJ_G0029397Cpsf39983.554Mus_pahari
ENSORLG00000018854cpsf39983.700MGP_SPRETEiJ_G0018481Cpsf39983.700Mus_spretus
ENSORLG00000018854cpsf39983.724ENSMPUG00000013213CPSF39983.724Mustela_putorius_furo
ENSORLG00000018854cpsf39983.578ENSMLUG00000010636CPSF39983.578Myotis_lucifugus
ENSORLG00000018854cpsf39983.407ENSNGAG00000019836Cpsf39983.407Nannospalax_galili
ENSORLG00000018854cpsf310091.983ENSNBRG00000004770cpsf310091.983Neolamprologus_brichardi
ENSORLG00000018854cpsf39184.897ENSNBRG00000010525CPSF39984.897Neolamprologus_brichardi
ENSORLG00000018854cpsf39983.407ENSNLEG00000013359CPSF39195.931Nomascus_leucogenys
ENSORLG00000018854cpsf39953.744ENSMEUG00000013117-9953.744Notamacropus_eugenii
ENSORLG00000018854cpsf39875.441ENSOPRG00000008902CPSF39975.441Ochotona_princeps
ENSORLG00000018854cpsf39983.847ENSODEG00000003129CPSF39983.847Octodon_degus
ENSORLG00000018854cpsf310091.691ENSONIG00000018812cpsf310091.691Oreochromis_niloticus
ENSORLG00000018854cpsf38180.961ENSOANG00000008577CPSF39980.961Ornithorhynchus_anatinus
ENSORLG00000018854cpsf39983.700ENSOCUG00000003728CPSF39983.700Oryctolagus_cuniculus
ENSORLG00000018854cpsf310099.854ENSORLG00020013331cpsf310099.854Oryzias_latipes_hni
ENSORLG00000018854cpsf3100100.000ENSORLG00015011017cpsf3100100.000Oryzias_latipes_hsok
ENSORLG00000018854cpsf310098.397ENSOMEG00000010647cpsf39698.397Oryzias_melastigma
ENSORLG00000018854cpsf39974.009ENSOGAG00000001680CPSF39974.009Otolemur_garnettii
ENSORLG00000018854cpsf39983.700ENSOARG00000015073CPSF39983.700Ovis_aries
ENSORLG00000018854cpsf39983.554ENSPPAG00000042457CPSF39195.931Pan_paniscus
ENSORLG00000018854cpsf39983.700ENSPPRG00000016790CPSF39983.847Panthera_pardus
ENSORLG00000018854cpsf39884.071ENSPTIG00000003920CPSF39984.218Panthera_tigris_altaica
ENSORLG00000018854cpsf39983.554ENSPTRG00000011638CPSF39195.931Pan_troglodytes
ENSORLG00000018854cpsf39983.554ENSPANG00000016798CPSF39593.154Papio_anubis
ENSORLG00000018854cpsf310086.232ENSPKIG00000023646cpsf310086.232Paramormyrops_kingsleyae
ENSORLG00000018854cpsf39982.845ENSPSIG00000016144CPSF39982.845Pelodiscus_sinensis
ENSORLG00000018854cpsf38289.703ENSPMGG00000006141-9984.320Periophthalmus_magnuspinnatus
ENSORLG00000018854cpsf35878.765ENSPMGG00000015311CPSF310078.765Periophthalmus_magnuspinnatus
ENSORLG00000018854cpsf39983.260ENSPEMG00000017668Cpsf39983.407Peromyscus_maniculatus_bairdii
ENSORLG00000018854cpsf37987.890ENSPMAG00000004841cpsf310087.890Petromyzon_marinus
ENSORLG00000018854cpsf39683.158ENSPCIG00000009823CPSF39883.896Phascolarctos_cinereus
ENSORLG00000018854cpsf310092.711ENSPFOG00000015922cpsf310092.711Poecilia_formosa
ENSORLG00000018854cpsf310087.101ENSPFOG00000010418-10087.101Poecilia_formosa
ENSORLG00000018854cpsf35880.494ENSPLAG00000021300-10080.494Poecilia_latipinna
ENSORLG00000018854cpsf310092.711ENSPLAG00000000882cpsf310092.711Poecilia_latipinna
ENSORLG00000018854cpsf310092.711ENSPMEG00000018309cpsf310092.711Poecilia_mexicana
ENSORLG00000018854cpsf39190.240ENSPREG00000014875cpsf310083.673Poecilia_reticulata
ENSORLG00000018854cpsf310082.029ENSPREG00000004482CPSF310082.029Poecilia_reticulata
ENSORLG00000018854cpsf39979.295ENSPPYG00000012666CPSF39979.295Pongo_abelii
ENSORLG00000018854cpsf38464.218ENSPCAG00000015042CPSF38864.218Procavia_capensis
ENSORLG00000018854cpsf38884.880ENSPCOG00000023016CPSF39984.880Propithecus_coquereli
ENSORLG00000018854cpsf39983.871ENSPVAG00000005324CPSF39983.871Pteropus_vampyrus
ENSORLG00000018854cpsf310092.128ENSPNYG00000004405cpsf310092.128Pundamilia_nyererei
ENSORLG00000018854cpsf37989.852ENSPNYG00000021047CPSF39182.060Pundamilia_nyererei
ENSORLG00000018854cpsf39985.320ENSPNAG00000023060cpsf39985.320Pygocentrus_nattereri
ENSORLG00000018854cpsf39983.700ENSRNOG00000052418Cpsf39983.700Rattus_norvegicus
ENSORLG00000018854cpsf39978.561ENSRBIG00000041615CPSF39979.535Rhinopithecus_bieti
ENSORLG00000018854cpsf39983.554ENSRROG00000033792CPSF39983.554Rhinopithecus_roxellana
ENSORLG00000018854cpsf39539.366YLR277CYSH19739.366Saccharomyces_cerevisiae
ENSORLG00000018854cpsf39680.150ENSSBOG00000027263CPSF39780.150Saimiri_boliviensis_boliviensis
ENSORLG00000018854cpsf39983.260ENSSHAG00000007024CPSF39983.260Sarcophilus_harrisii
ENSORLG00000018854cpsf310085.942ENSSFOG00015002108cpsf310085.942Scleropages_formosus
ENSORLG00000018854cpsf39687.082ENSSMAG00000020534CPSF39787.082Scophthalmus_maximus
ENSORLG00000018854cpsf310091.399ENSSDUG00000002828cpsf39791.399Seriola_dumerili
ENSORLG00000018854cpsf39986.483ENSSDUG00000018498CPSF39986.483Seriola_dumerili
ENSORLG00000018854cpsf310091.254ENSSLDG00000008469cpsf39791.254Seriola_lalandi_dorsalis
ENSORLG00000018854cpsf39986.483ENSSLDG00000005234CPSF39986.483Seriola_lalandi_dorsalis
ENSORLG00000018854cpsf38881.989ENSSARG00000005186CPSF38981.989Sorex_araneus
ENSORLG00000018854cpsf39682.511ENSSPUG00000015525CPSF39782.511Sphenodon_punctatus
ENSORLG00000018854cpsf310092.128ENSSPAG00000018579cpsf310092.128Stegastes_partitus
ENSORLG00000018854cpsf39986.483ENSSPAG00000002906CPSF39986.483Stegastes_partitus
ENSORLG00000018854cpsf39983.700ENSSSCG00000020799CPSF39983.700Sus_scrofa
ENSORLG00000018854cpsf39983.333ENSTGUG00000013016CPSF310083.333Taeniopygia_guttata
ENSORLG00000018854cpsf35871.111ENSTRUG00000013905CPSF39971.111Takifugu_rubripes
ENSORLG00000018854cpsf39990.365ENSTRUG00000007030cpsf39890.365Takifugu_rubripes
ENSORLG00000018854cpsf38489.835ENSTBEG00000002707CPSF38489.835Tupaia_belangeri
ENSORLG00000018854cpsf38672.397ENSTTRG00000000861CPSF38772.397Tursiops_truncatus
ENSORLG00000018854cpsf39684.627ENSUAMG00000007535CPSF39484.627Ursus_americanus
ENSORLG00000018854cpsf39383.256ENSUMAG00000003676CPSF39488.889Ursus_maritimus
ENSORLG00000018854cpsf39284.227ENSVPAG00000008041CPSF310084.227Vicugna_pacos
ENSORLG00000018854cpsf39983.700ENSVVUG00000002194CPSF39983.700Vulpes_vulpes
ENSORLG00000018854cpsf39982.319ENSXETG00000008263cpsf39982.319Xenopus_tropicalis
ENSORLG00000018854cpsf35479.570ENSXCOG00000000957-8779.570Xiphophorus_couchianus
ENSORLG00000018854cpsf310092.274ENSXCOG00000019695cpsf310092.274Xiphophorus_couchianus
ENSORLG00000018854cpsf310087.681ENSXMAG00000027291CPSF310087.681Xiphophorus_maculatus
ENSORLG00000018854cpsf310092.566ENSXMAG00000009784cpsf310092.679Xiphophorus_maculatus

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