EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000019641 (Gene tree)
Gene ID: 101174721
Gene Symbol: prpf4
Alias: -
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 31704 bases
Position: chr12:5109-36812
Accession: 101174721
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000024425	PRP4	PF08799.11	2.7e-14	1	1
ENSORLP00000036352	PRP4	PF08799.11	2.7e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000037562	-	4802	-	ENSORLP00000036352	505 (aa)	-	UPI0000EA1C53
ENSORLT00000024426	-	3918	XM_004084569	ENSORLP00000024425	505 (aa)	XP_004084617	H2MZD4

Gene Model

Click here to download ENSORLG00000019641's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000019641's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000019641	prpf4	58	33.673	ENSORLG00000009312	tbl3	83	30.290
ENSORLG00000019641	prpf4	58	30.952	ENSORLG00000001904	wdr61	100	30.952
ENSORLG00000019641	prpf4	55	34.286	ENSORLG00000009259	pex7	73	34.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000019641	prpf4	99	74.900	ENSG00000136875	PRPF4	96	74.900	Homo_sapiens
ENSORLG00000019641	prpf4	99	89.855	ENSAPOG00000014132	prpf4	99	89.855	Acanthochromis_polyacanthus
ENSORLG00000019641	prpf4	99	74.900	ENSAMEG00000013048	PRPF4	94	74.900	Ailuropoda_melanoleuca
ENSORLG00000019641	prpf4	100	90.784	ENSACIG00000005579	prpf4	100	90.784	Amphilophus_citrinellus
ENSORLG00000019641	prpf4	100	89.412	ENSAOCG00000005457	prpf4	100	89.412	Amphiprion_ocellaris
ENSORLG00000019641	prpf4	100	89.216	ENSAPEG00000000776	prpf4	100	89.216	Amphiprion_percula
ENSORLG00000019641	prpf4	100	89.608	ENSATEG00000023013	prpf4	100	89.608	Anabas_testudineus
ENSORLG00000019641	prpf4	99	75.842	ENSAPLG00000006534	PRPF4	94	75.842	Anas_platyrhynchos
ENSORLG00000019641	prpf4	99	74.460	ENSACAG00000015110	PRPF4	97	74.460	Anolis_carolinensis
ENSORLG00000019641	prpf4	99	74.900	ENSANAG00000022464	PRPF4	93	74.900	Aotus_nancymaae
ENSORLG00000019641	prpf4	100	91.176	ENSACLG00000019031	prpf4	100	91.176	Astatotilapia_calliptera
ENSORLG00000019641	prpf4	100	60.115	ENSAMXG00000006756	prpf4	100	72.244	Astyanax_mexicanus
ENSORLG00000019641	prpf4	99	74.900	ENSBTAG00000004571	PRPF4	96	74.900	Bos_taurus
ENSORLG00000019641	prpf4	89	45.475	WBGene00007972	prp-4	91	45.475	Caenorhabditis_elegans
ENSORLG00000019641	prpf4	99	74.900	ENSCJAG00000017856	PRPF4	96	74.900	Callithrix_jacchus
ENSORLG00000019641	prpf4	98	75.200	ENSCAFG00000003224	PRPF4	93	75.050	Canis_familiaris
ENSORLG00000019641	prpf4	99	74.900	ENSCAFG00020022637	PRPF4	97	74.900	Canis_lupus_dingo
ENSORLG00000019641	prpf4	99	74.900	ENSCHIG00000024648	-	96	74.900	Capra_hircus
ENSORLG00000019641	prpf4	99	75.100	ENSTSYG00000010366	PRPF4	96	75.100	Carlito_syrichta
ENSORLG00000019641	prpf4	91	67.780	ENSCAPG00000008935	PRPF4	97	67.780	Cavia_aperea
ENSORLG00000019641	prpf4	98	74.800	ENSCPOG00000010747	-	96	74.502	Cavia_porcellus
ENSORLG00000019641	prpf4	99	69.721	ENSCPOG00000014729	-	96	69.721	Cavia_porcellus
ENSORLG00000019641	prpf4	99	74.701	ENSCCAG00000028990	PRPF4	96	74.701	Cebus_capucinus
ENSORLG00000019641	prpf4	99	74.900	ENSCATG00000021552	PRPF4	96	74.900	Cercocebus_atys
ENSORLG00000019641	prpf4	99	75.100	ENSCLAG00000013448	PRPF4	96	75.100	Chinchilla_lanigera
ENSORLG00000019641	prpf4	90	74.336	ENSCHOG00000007233	PRPF4	100	74.336	Choloepus_hoffmanni
ENSORLG00000019641	prpf4	100	74.409	ENSCPBG00000019136	PRPF4	73	74.409	Chrysemys_picta_bellii
ENSORLG00000019641	prpf4	97	60.852	ENSCING00000001299	-	95	60.852	Ciona_intestinalis
ENSORLG00000019641	prpf4	99	59.136	ENSCSAVG00000009178	-	99	60.560	Ciona_savignyi
ENSORLG00000019641	prpf4	99	74.900	ENSCANG00000003246	PRPF4	96	74.900	Colobus_angolensis_palliatus
ENSORLG00000019641	prpf4	99	74.701	ENSCGRG00001016992	Prpf4	96	74.701	Cricetulus_griseus_chok1gshd
ENSORLG00000019641	prpf4	99	74.701	ENSCGRG00000017560	Prpf4	96	74.701	Cricetulus_griseus_crigri
ENSORLG00000019641	prpf4	100	86.166	ENSCSEG00000020451	prpf4	100	86.166	Cynoglossus_semilaevis
ENSORLG00000019641	prpf4	100	78.150	ENSDARG00000067639	prpf4	100	78.150	Danio_rerio
ENSORLG00000019641	prpf4	98	74.800	ENSDNOG00000013203	PRPF4	96	74.502	Dasypus_novemcinctus
ENSORLG00000019641	prpf4	99	75.299	ENSDORG00000026275	Prpf4	96	75.299	Dipodomys_ordii
ENSORLG00000019641	prpf4	99	50.091	FBgn0036733	U4-U6-60K	99	50.635	Drosophila_melanogaster
ENSORLG00000019641	prpf4	99	75.299	ENSETEG00000020389	PRPF4	96	75.299	Echinops_telfairi
ENSORLG00000019641	prpf4	99	67.727	ENSEBUG00000015229	prpf4	88	67.727	Eptatretus_burgeri
ENSORLG00000019641	prpf4	99	74.900	ENSEASG00005022678	PRPF4	96	74.900	Equus_asinus_asinus
ENSORLG00000019641	prpf4	99	74.900	ENSECAG00000007072	PRPF4	96	74.900	Equus_caballus
ENSORLG00000019641	prpf4	98	60.092	ENSEEUG00000007480	PRPF4	95	60.092	Erinaceus_europaeus
ENSORLG00000019641	prpf4	100	79.684	ENSELUG00000007510	prpf4	100	79.684	Esox_lucius
ENSORLG00000019641	prpf4	99	74.900	ENSFCAG00000005514	PRPF4	96	74.900	Felis_catus
ENSORLG00000019641	prpf4	99	74.603	ENSFALG00000005423	PRPF4	85	74.603	Ficedula_albicollis
ENSORLG00000019641	prpf4	98	75.200	ENSFDAG00000005839	PRPF4	96	74.900	Fukomys_damarensis
ENSORLG00000019641	prpf4	100	90.000	ENSFHEG00000001300	prpf4	100	90.000	Fundulus_heteroclitus
ENSORLG00000019641	prpf4	99	75.644	ENSGALG00000008857	PRPF4	94	75.644	Gallus_gallus
ENSORLG00000019641	prpf4	94	84.498	ENSGAFG00000012164	prpf4	68	84.498	Gambusia_affinis
ENSORLG00000019641	prpf4	100	80.079	ENSGACG00000015476	prpf4	100	79.882	Gasterosteus_aculeatus
ENSORLG00000019641	prpf4	100	74.016	ENSGAGG00000025029	PRPF4	94	74.016	Gopherus_agassizii
ENSORLG00000019641	prpf4	99	74.900	ENSGGOG00000006943	PRPF4	96	74.900	Gorilla_gorilla
ENSORLG00000019641	prpf4	100	91.176	ENSHBUG00000000562	prpf4	100	91.176	Haplochromis_burtoni
ENSORLG00000019641	prpf4	99	74.701	ENSHGLG00000015191	PRPF4	96	74.701	Heterocephalus_glaber_female
ENSORLG00000019641	prpf4	98	60.200	ENSHGLG00000003838	-	96	60.200	Heterocephalus_glaber_female
ENSORLG00000019641	prpf4	95	65.298	ENSHGLG00000016628	-	95	65.503	Heterocephalus_glaber_female
ENSORLG00000019641	prpf4	98	60.200	ENSHGLG00100005571	-	96	60.200	Heterocephalus_glaber_male
ENSORLG00000019641	prpf4	100	77.362	ENSIPUG00000017956	PRPF4	100	77.362	Ictalurus_punctatus
ENSORLG00000019641	prpf4	99	74.900	ENSSTOG00000027833	PRPF4	96	74.900	Ictidomys_tridecemlineatus
ENSORLG00000019641	prpf4	99	74.900	ENSJJAG00000008838	Prpf4	96	74.900	Jaculus_jaculus
ENSORLG00000019641	prpf4	100	89.412	ENSKMAG00000013236	prpf4	100	89.412	Kryptolebias_marmoratus
ENSORLG00000019641	prpf4	100	90.551	ENSLBEG00000020611	prpf4	100	90.551	Labrus_bergylta
ENSORLG00000019641	prpf4	100	70.784	ENSLACG00000016317	PRPF4	97	70.784	Latimeria_chalumnae
ENSORLG00000019641	prpf4	100	79.331	ENSLOCG00000000581	prpf4	100	79.331	Lepisosteus_oculatus
ENSORLG00000019641	prpf4	99	74.900	ENSLAFG00000018225	PRPF4	96	74.900	Loxodonta_africana
ENSORLG00000019641	prpf4	99	74.701	ENSMFAG00000039397	PRPF4	96	74.701	Macaca_fascicularis
ENSORLG00000019641	prpf4	99	74.900	ENSMMUG00000005844	PRPF4	96	74.900	Macaca_mulatta
ENSORLG00000019641	prpf4	99	65.737	ENSMNEG00000033737	PRPF4	96	65.737	Macaca_nemestrina
ENSORLG00000019641	prpf4	99	74.900	ENSMLEG00000040284	PRPF4	96	74.900	Mandrillus_leucophaeus
ENSORLG00000019641	prpf4	100	90.392	ENSMAMG00000020141	prpf4	100	90.392	Mastacembelus_armatus
ENSORLG00000019641	prpf4	100	91.176	ENSMZEG00005023205	prpf4	100	91.176	Maylandia_zebra
ENSORLG00000019641	prpf4	99	75.050	ENSMGAG00000001796	PRPF4	94	75.050	Meleagris_gallopavo
ENSORLG00000019641	prpf4	99	74.701	ENSMAUG00000018022	Prpf4	96	74.701	Mesocricetus_auratus
ENSORLG00000019641	prpf4	99	74.359	ENSMICG00000015022	PRPF4	97	74.359	Microcebus_murinus
ENSORLG00000019641	prpf4	98	75.000	ENSMOCG00000018273	Prpf4	96	74.701	Microtus_ochrogaster
ENSORLG00000019641	prpf4	100	89.328	ENSMMOG00000021177	prpf4	100	89.328	Mola_mola
ENSORLG00000019641	prpf4	99	74.359	ENSMODG00000004444	-	97	74.653	Monodelphis_domestica
ENSORLG00000019641	prpf4	99	73.767	ENSMODG00000025096	-	94	74.059	Monodelphis_domestica
ENSORLG00000019641	prpf4	100	90.000	ENSMALG00000013624	prpf4	100	90.000	Monopterus_albus
ENSORLG00000019641	prpf4	99	74.701	MGP_CAROLIEiJ_G0026078	Prpf4	96	74.701	Mus_caroli
ENSORLG00000019641	prpf4	99	74.701	ENSMUSG00000066148	Prpf4	96	74.701	Mus_musculus
ENSORLG00000019641	prpf4	99	74.900	MGP_PahariEiJ_G0028413	Prpf4	96	74.900	Mus_pahari
ENSORLG00000019641	prpf4	99	74.701	MGP_SPRETEiJ_G0027042	Prpf4	96	74.701	Mus_spretus
ENSORLG00000019641	prpf4	99	74.900	ENSMPUG00000007883	PRPF4	96	74.900	Mustela_putorius_furo
ENSORLG00000019641	prpf4	99	73.307	ENSMLUG00000008626	-	94	73.307	Myotis_lucifugus
ENSORLG00000019641	prpf4	99	74.701	ENSMLUG00000015309	-	93	74.850	Myotis_lucifugus
ENSORLG00000019641	prpf4	99	69.721	ENSNGAG00000000468	Prpf4	96	69.721	Nannospalax_galili
ENSORLG00000019641	prpf4	100	91.373	ENSNBRG00000007972	prpf4	100	91.373	Neolamprologus_brichardi
ENSORLG00000019641	prpf4	99	74.900	ENSNLEG00000016647	PRPF4	96	74.900	Nomascus_leucogenys
ENSORLG00000019641	prpf4	99	73.964	ENSMEUG00000013256	PRPF4	98	74.257	Notamacropus_eugenii
ENSORLG00000019641	prpf4	98	75.400	ENSOPRG00000005302	PRPF4	96	75.400	Ochotona_princeps
ENSORLG00000019641	prpf4	99	74.900	ENSODEG00000018147	PRPF4	96	74.900	Octodon_degus
ENSORLG00000019641	prpf4	100	90.980	ENSONIG00000012671	prpf4	100	90.980	Oreochromis_niloticus
ENSORLG00000019641	prpf4	99	75.100	ENSOCUG00000005046	PRPF4	96	75.100	Oryctolagus_cuniculus
ENSORLG00000019641	prpf4	100	100.000	ENSORLG00020019438	prpf4	100	100.000	Oryzias_latipes_hni
ENSORLG00000019641	prpf4	99	96.653	ENSOMEG00000020941	prpf4	100	96.653	Oryzias_melastigma
ENSORLG00000019641	prpf4	99	70.717	ENSOGAG00000007802	PRPF4	94	70.717	Otolemur_garnettii
ENSORLG00000019641	prpf4	99	74.900	ENSOARG00000006319	PRPF4	93	74.900	Ovis_aries
ENSORLG00000019641	prpf4	99	74.900	ENSPPAG00000041797	PRPF4	96	74.900	Pan_paniscus
ENSORLG00000019641	prpf4	99	74.900	ENSPPRG00000014360	PRPF4	96	74.900	Panthera_pardus
ENSORLG00000019641	prpf4	99	74.900	ENSPTIG00000009574	PRPF4	96	74.900	Panthera_tigris_altaica
ENSORLG00000019641	prpf4	99	74.900	ENSPTRG00000021274	PRPF4	96	74.900	Pan_troglodytes
ENSORLG00000019641	prpf4	99	75.100	ENSPANG00000025776	PRPF4	92	75.100	Papio_anubis
ENSORLG00000019641	prpf4	100	79.882	ENSPKIG00000017259	prpf4	100	79.882	Paramormyrops_kingsleyae
ENSORLG00000019641	prpf4	100	74.606	ENSPSIG00000010713	PRPF4	89	74.606	Pelodiscus_sinensis
ENSORLG00000019641	prpf4	100	64.312	ENSPMGG00000000997	prpf4	98	65.613	Periophthalmus_magnuspinnatus
ENSORLG00000019641	prpf4	99	74.701	ENSPEMG00000024115	Prpf4	96	74.701	Peromyscus_maniculatus_bairdii
ENSORLG00000019641	prpf4	99	74.162	ENSPCIG00000003821	PRPF4	98	74.455	Phascolarctos_cinereus
ENSORLG00000019641	prpf4	100	81.712	ENSPFOG00000013524	prpf4	99	84.195	Poecilia_formosa
ENSORLG00000019641	prpf4	84	82.769	ENSPLAG00000011620	prpf4	97	82.663	Poecilia_latipinna
ENSORLG00000019641	prpf4	98	84.661	ENSPMEG00000006813	prpf4	100	84.661	Poecilia_mexicana
ENSORLG00000019641	prpf4	99	74.701	ENSPCAG00000002561	PRPF4	98	74.701	Procavia_capensis
ENSORLG00000019641	prpf4	99	74.701	ENSPCOG00000011975	PRPF4	96	74.701	Propithecus_coquereli
ENSORLG00000019641	prpf4	98	72.000	ENSPVAG00000004708	PRPF4	96	71.713	Pteropus_vampyrus
ENSORLG00000019641	prpf4	100	91.176	ENSPNYG00000008013	prpf4	100	91.176	Pundamilia_nyererei
ENSORLG00000019641	prpf4	100	79.331	ENSPNAG00000000697	prpf4	100	79.331	Pygocentrus_nattereri
ENSORLG00000019641	prpf4	99	74.701	ENSRNOG00000014777	Prpf4	96	74.701	Rattus_norvegicus
ENSORLG00000019641	prpf4	99	74.900	ENSRBIG00000040221	PRPF4	96	74.900	Rhinopithecus_bieti
ENSORLG00000019641	prpf4	99	74.900	ENSRROG00000040240	PRPF4	96	74.900	Rhinopithecus_roxellana
ENSORLG00000019641	prpf4	99	74.162	ENSSHAG00000017658	PRPF4	97	74.455	Sarcophilus_harrisii
ENSORLG00000019641	prpf4	100	79.724	ENSSFOG00015008963	prpf4	100	79.724	Scleropages_formosus
ENSORLG00000019641	prpf4	100	89.216	ENSSMAG00000008889	prpf4	100	89.216	Scophthalmus_maximus
ENSORLG00000019641	prpf4	99	90.476	ENSSDUG00000022083	prpf4	94	90.476	Seriola_dumerili
ENSORLG00000019641	prpf4	99	90.062	ENSSLDG00000008115	prpf4	94	90.062	Seriola_lalandi_dorsalis
ENSORLG00000019641	prpf4	99	74.556	ENSSPUG00000015582	PRPF4	97	74.556	Sphenodon_punctatus
ENSORLG00000019641	prpf4	100	84.016	ENSSPAG00000011286	prpf4	100	84.016	Stegastes_partitus
ENSORLG00000019641	prpf4	99	74.900	ENSSSCG00000024648	PRPF4	96	74.900	Sus_scrofa
ENSORLG00000019641	prpf4	98	75.904	ENSTGUG00000002623	PRPF4	100	76.687	Taeniopygia_guttata
ENSORLG00000019641	prpf4	100	86.444	ENSTRUG00000008853	prpf4	100	86.444	Takifugu_rubripes
ENSORLG00000019641	prpf4	100	86.957	ENSTNIG00000013250	prpf4	100	86.957	Tetraodon_nigroviridis
ENSORLG00000019641	prpf4	98	67.600	ENSTBEG00000000821	PRPF4	96	67.331	Tupaia_belangeri
ENSORLG00000019641	prpf4	90	78.523	ENSTTRG00000003246	PRPF4	85	78.523	Tursiops_truncatus
ENSORLG00000019641	prpf4	62	70.476	ENSUAMG00000018288	PRPF4	88	71.661	Ursus_americanus
ENSORLG00000019641	prpf4	99	74.303	ENSUMAG00000019375	PRPF4	96	74.303	Ursus_maritimus
ENSORLG00000019641	prpf4	98	74.950	ENSVPAG00000005281	PRPF4	96	74.950	Vicugna_pacos
ENSORLG00000019641	prpf4	99	74.111	ENSVVUG00000002476	PRPF4	99	74.405	Vulpes_vulpes
ENSORLG00000019641	prpf4	71	64.011	ENSXCOG00000006101	prpf4	93	66.748	Xiphophorus_couchianus
ENSORLG00000019641	prpf4	91	73.118	ENSXMAG00000002750	prpf4	100	75.049	Xiphophorus_maculatus