EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000019743 (Gene tree)
Gene ID: 101171140
Gene Symbol: polr1c
Alias: -
Full Name: RNA polymerase I and III subunit C
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 36723 bases
Position: chr15:424520-461242
Accession: 101171140
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000040290	RNA_pol_A_bac	PF01000.26	9.5e-31	1	1
ENSORLP00000024535	RNA_pol_A_bac	PF01000.26	1.1e-29	1	1
ENSORLP00000024535	RNA_pol_L	PF01193.24	6.6e-24	1	1
ENSORLP00000040290	RNA_pol_L	PF01193.24	7.3e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000029234	-	1760	XM_023963197	ENSORLP00000040290	351 (aa)	XP_023818965	UPI000CE1BB54
ENSORLT00000024536	-	1032	-	ENSORLP00000024535	343 (aa)	-	H2MZM7

Gene Model

Click here to download ENSORLG00000019743's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03020	RNA polymerase	KEGG
ola04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000019743's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000019743	polr1c	99	69.741	ENSG00000171453	POLR1C	100	71.774	Homo_sapiens
ENSORLG00000019743	polr1c	99	83.046	ENSAPOG00000024356	polr1c	99	83.046	Acanthochromis_polyacanthus
ENSORLG00000019743	polr1c	98	69.855	ENSAMEG00000012205	POLR1C	98	69.855	Ailuropoda_melanoleuca
ENSORLG00000019743	polr1c	93	74.085	ENSACIG00000016268	polr1c	90	74.763	Amphilophus_citrinellus
ENSORLG00000019743	polr1c	99	82.759	ENSAOCG00000011687	polr1c	96	82.759	Amphiprion_ocellaris
ENSORLG00000019743	polr1c	99	83.621	ENSAPEG00000002433	polr1c	99	83.621	Amphiprion_percula
ENSORLG00000019743	polr1c	99	85.143	ENSATEG00000005985	polr1c	99	85.143	Anabas_testudineus
ENSORLG00000019743	polr1c	86	71.284	ENSAPLG00000002908	POLR1C	99	71.284	Anas_platyrhynchos
ENSORLG00000019743	polr1c	90	73.016	ENSACAG00000009764	POLR1C	89	73.016	Anolis_carolinensis
ENSORLG00000019743	polr1c	99	70.029	ENSANAG00000025805	POLR1C	98	70.029	Aotus_nancymaae
ENSORLG00000019743	polr1c	100	83.761	ENSACLG00000006573	polr1c	100	83.761	Astatotilapia_calliptera
ENSORLG00000019743	polr1c	57	31.034	ENSACLG00000004854	polr2c	80	31.034	Astatotilapia_calliptera
ENSORLG00000019743	polr1c	99	77.586	ENSAMXG00000012062	polr1c	99	77.586	Astyanax_mexicanus
ENSORLG00000019743	polr1c	98	70.435	ENSBTAG00000018969	POLR1C	99	70.435	Bos_taurus
ENSORLG00000019743	polr1c	93	43.620	WBGene00019275	rpac-40	92	44.214	Caenorhabditis_elegans
ENSORLG00000019743	polr1c	99	69.452	ENSCJAG00000005594	POLR1C	99	69.452	Callithrix_jacchus
ENSORLG00000019743	polr1c	98	69.855	ENSCAFG00000001872	POLR1C	99	69.855	Canis_familiaris
ENSORLG00000019743	polr1c	60	30.660	ENSCAFG00020007660	POLR2C	60	30.660	Canis_lupus_dingo
ENSORLG00000019743	polr1c	98	69.855	ENSCAFG00020012018	POLR1C	99	69.855	Canis_lupus_dingo
ENSORLG00000019743	polr1c	98	70.145	ENSCHIG00000004352	POLR1C	99	70.145	Capra_hircus
ENSORLG00000019743	polr1c	98	69.855	ENSTSYG00000011921	POLR1C	99	69.855	Carlito_syrichta
ENSORLG00000019743	polr1c	86	72.203	ENSCAPG00000015364	POLR1C	87	72.203	Cavia_aperea
ENSORLG00000019743	polr1c	99	70.893	ENSCPOG00000038098	POLR1C	99	70.893	Cavia_porcellus
ENSORLG00000019743	polr1c	98	69.565	ENSCCAG00000020169	POLR1C	99	69.565	Cebus_capucinus
ENSORLG00000019743	polr1c	99	69.741	ENSCATG00000044045	POLR1C	99	69.741	Cercocebus_atys
ENSORLG00000019743	polr1c	99	71.182	ENSCLAG00000009266	POLR1C	99	71.182	Chinchilla_lanigera
ENSORLG00000019743	polr1c	60	30.660	ENSCLAG00000013676	POLR2C	52	30.660	Chinchilla_lanigera
ENSORLG00000019743	polr1c	99	69.164	ENSCSAG00000011913	POLR1C	99	69.164	Chlorocebus_sabaeus
ENSORLG00000019743	polr1c	61	66.346	ENSCHOG00000006601	POLR1C	98	66.346	Choloepus_hoffmanni
ENSORLG00000019743	polr1c	99	74.063	ENSCPBG00000025203	POLR1C	99	74.063	Chrysemys_picta_bellii
ENSORLG00000019743	polr1c	97	54.386	ENSCING00000003563	-	97	54.386	Ciona_intestinalis
ENSORLG00000019743	polr1c	56	32.161	ENSCSAVG00000002167	-	66	32.161	Ciona_savignyi
ENSORLG00000019743	polr1c	99	69.741	ENSCANG00000043167	POLR1C	99	69.741	Colobus_angolensis_palliatus
ENSORLG00000019743	polr1c	98	69.565	ENSCGRG00001017533	Polr1c	99	69.565	Cricetulus_griseus_chok1gshd
ENSORLG00000019743	polr1c	86	71.186	ENSCGRG00000013225	Polr1c	99	71.186	Cricetulus_griseus_crigri
ENSORLG00000019743	polr1c	99	80.747	ENSCSEG00000018097	polr1c	99	80.747	Cynoglossus_semilaevis
ENSORLG00000019743	polr1c	61	88.462	ENSCVAG00000005684	polr1c	88	87.215	Cyprinodon_variegatus
ENSORLG00000019743	polr1c	99	76.724	ENSDARG00000039400	polr1c	95	76.724	Danio_rerio
ENSORLG00000019743	polr1c	99	69.452	ENSDNOG00000042693	POLR1C	99	69.452	Dasypus_novemcinctus
ENSORLG00000019743	polr1c	98	69.855	ENSDORG00000000429	Polr1c	99	69.855	Dipodomys_ordii
ENSORLG00000019743	polr1c	95	49.102	FBgn0031657	CG3756	97	49.102	Drosophila_melanogaster
ENSORLG00000019743	polr1c	98	66.087	ENSETEG00000010807	POLR1C	99	66.087	Echinops_telfairi
ENSORLG00000019743	polr1c	98	64.928	ENSEBUG00000013725	polr1c	98	64.928	Eptatretus_burgeri
ENSORLG00000019743	polr1c	98	69.855	ENSEASG00005003338	POLR1C	99	69.855	Equus_asinus_asinus
ENSORLG00000019743	polr1c	98	69.855	ENSECAG00000023516	POLR1C	97	69.855	Equus_caballus
ENSORLG00000019743	polr1c	98	71.014	ENSEEUG00000005471	POLR1C	99	71.014	Erinaceus_europaeus
ENSORLG00000019743	polr1c	99	77.299	ENSELUG00000013027	polr1c	99	77.299	Esox_lucius
ENSORLG00000019743	polr1c	98	70.145	ENSFCAG00000009735	POLR1C	99	70.145	Felis_catus
ENSORLG00000019743	polr1c	94	70.898	ENSFALG00000012111	POLR1C	100	70.898	Ficedula_albicollis
ENSORLG00000019743	polr1c	98	70.145	ENSFDAG00000008428	POLR1C	99	70.145	Fukomys_damarensis
ENSORLG00000019743	polr1c	100	71.225	ENSFHEG00000000262	polr1c	100	71.795	Fundulus_heteroclitus
ENSORLG00000019743	polr1c	94	78.328	ENSGMOG00000013878	polr1c	100	78.328	Gadus_morhua
ENSORLG00000019743	polr1c	99	70.893	ENSGALG00000010349	POLR1C	99	70.893	Gallus_gallus
ENSORLG00000019743	polr1c	99	85.879	ENSGAFG00000010153	polr1c	99	85.879	Gambusia_affinis
ENSORLG00000019743	polr1c	99	81.322	ENSGACG00000002453	polr1c	99	81.322	Gasterosteus_aculeatus
ENSORLG00000019743	polr1c	99	73.199	ENSGAGG00000010640	POLR1C	99	73.199	Gopherus_agassizii
ENSORLG00000019743	polr1c	99	69.741	ENSGGOG00000010903	POLR1C	99	69.741	Gorilla_gorilla
ENSORLG00000019743	polr1c	57	31.034	ENSHBUG00000023040	polr2c	80	31.034	Haplochromis_burtoni
ENSORLG00000019743	polr1c	100	74.644	ENSHBUG00000017816	polr1c	100	74.644	Haplochromis_burtoni
ENSORLG00000019743	polr1c	98	69.855	ENSHGLG00000019441	POLR1C	99	69.855	Heterocephalus_glaber_female
ENSORLG00000019743	polr1c	98	70.145	ENSHGLG00100005970	POLR1C	99	70.145	Heterocephalus_glaber_male
ENSORLG00000019743	polr1c	99	78.448	ENSHCOG00000002179	polr1c	99	78.448	Hippocampus_comes
ENSORLG00000019743	polr1c	99	78.098	ENSIPUG00000024464	polr1c	99	78.098	Ictalurus_punctatus
ENSORLG00000019743	polr1c	98	69.855	ENSSTOG00000010631	POLR1C	99	69.855	Ictidomys_tridecemlineatus
ENSORLG00000019743	polr1c	60	30.660	ENSSTOG00000015150	-	50	30.660	Ictidomys_tridecemlineatus
ENSORLG00000019743	polr1c	98	70.145	ENSJJAG00000023110	Polr1c	99	70.145	Jaculus_jaculus
ENSORLG00000019743	polr1c	100	85.185	ENSKMAG00000014305	polr1c	97	85.185	Kryptolebias_marmoratus
ENSORLG00000019743	polr1c	100	84.046	ENSLBEG00000014925	polr1c	100	84.046	Labrus_bergylta
ENSORLG00000019743	polr1c	93	56.347	ENSLACG00000012567	POLR1C	95	56.347	Latimeria_chalumnae
ENSORLG00000019743	polr1c	99	75.575	ENSLOCG00000016710	polr1c	95	75.575	Lepisosteus_oculatus
ENSORLG00000019743	polr1c	86	72.054	ENSLAFG00000026248	POLR1C	99	72.054	Loxodonta_africana
ENSORLG00000019743	polr1c	60	30.660	ENSLAFG00000027230	POLR2C	74	30.660	Loxodonta_africana
ENSORLG00000019743	polr1c	99	69.452	ENSMFAG00000046295	POLR1C	99	69.452	Macaca_fascicularis
ENSORLG00000019743	polr1c	99	69.452	ENSMMUG00000015192	POLR1C	99	69.452	Macaca_mulatta
ENSORLG00000019743	polr1c	99	69.452	ENSMNEG00000028073	POLR1C	99	69.452	Macaca_nemestrina
ENSORLG00000019743	polr1c	99	69.741	ENSMLEG00000034818	POLR1C	99	69.741	Mandrillus_leucophaeus
ENSORLG00000019743	polr1c	100	83.476	ENSMAMG00000008700	polr1c	100	83.476	Mastacembelus_armatus
ENSORLG00000019743	polr1c	100	83.476	ENSMZEG00005018545	polr1c	100	83.476	Maylandia_zebra
ENSORLG00000019743	polr1c	83	67.944	ENSMGAG00000011020	POLR1C	99	67.944	Meleagris_gallopavo
ENSORLG00000019743	polr1c	55	30.457	ENSMAUG00000019031	-	72	30.457	Mesocricetus_auratus
ENSORLG00000019743	polr1c	98	69.565	ENSMAUG00000014329	Polr1c	99	69.565	Mesocricetus_auratus
ENSORLG00000019743	polr1c	98	68.406	ENSMICG00000005027	POLR1C	99	69.132	Microcebus_murinus
ENSORLG00000019743	polr1c	60	30.952	ENSMOCG00000013652	Polr2c	73	30.952	Microtus_ochrogaster
ENSORLG00000019743	polr1c	98	70.435	ENSMOCG00000017549	Polr1c	99	70.435	Microtus_ochrogaster
ENSORLG00000019743	polr1c	100	67.521	ENSMMOG00000005380	polr1c	100	68.091	Mola_mola
ENSORLG00000019743	polr1c	83	72.474	ENSMODG00000018964	POLR1C	99	72.474	Monodelphis_domestica
ENSORLG00000019743	polr1c	100	70.940	ENSMALG00000011711	polr1c	100	71.510	Monopterus_albus
ENSORLG00000019743	polr1c	98	60.870	MGP_CAROLIEiJ_G0021662	Polr1c	98	69.141	Mus_caroli
ENSORLG00000019743	polr1c	98	69.565	ENSMUSG00000067148	Polr1c	98	73.267	Mus_musculus
ENSORLG00000019743	polr1c	98	69.855	MGP_PahariEiJ_G0020654	Polr1c	98	74.257	Mus_pahari
ENSORLG00000019743	polr1c	98	69.855	MGP_SPRETEiJ_G0022574	Polr1c	98	73.267	Mus_spretus
ENSORLG00000019743	polr1c	98	70.145	ENSMPUG00000012916	POLR1C	90	70.145	Mustela_putorius_furo
ENSORLG00000019743	polr1c	98	70.145	ENSMLUG00000017751	POLR1C	98	70.145	Myotis_lucifugus
ENSORLG00000019743	polr1c	98	69.855	ENSNGAG00000023487	Polr1c	99	71.080	Nannospalax_galili
ENSORLG00000019743	polr1c	99	84.483	ENSNBRG00000018742	polr1c	99	84.483	Neolamprologus_brichardi
ENSORLG00000019743	polr1c	99	69.452	ENSNLEG00000004035	POLR1C	99	69.452	Nomascus_leucogenys
ENSORLG00000019743	polr1c	99	60.231	ENSMEUG00000006778	POLR1C	99	60.231	Notamacropus_eugenii
ENSORLG00000019743	polr1c	77	69.004	ENSOPRG00000000145	POLR1C	99	69.004	Ochotona_princeps
ENSORLG00000019743	polr1c	62	68.224	ENSODEG00000017109	-	98	68.372	Octodon_degus
ENSORLG00000019743	polr1c	99	71.182	ENSODEG00000015831	-	99	71.182	Octodon_degus
ENSORLG00000019743	polr1c	99	84.770	ENSONIG00000013133	polr1c	97	84.770	Oreochromis_niloticus
ENSORLG00000019743	polr1c	98	68.116	ENSOANG00000003043	POLR1C	99	68.116	Ornithorhynchus_anatinus
ENSORLG00000019743	polr1c	98	69.275	ENSOCUG00000005504	POLR1C	98	69.275	Oryctolagus_cuniculus
ENSORLG00000019743	polr1c	77	76.087	ENSORLG00020005555	polr1c	81	76.087	Oryzias_latipes_hni
ENSORLG00000019743	polr1c	100	98.860	ENSORLG00020006489	POLR1C	100	98.860	Oryzias_latipes_hni
ENSORLG00000019743	polr1c	100	98.291	ENSORLG00015013322	polr1c	100	98.291	Oryzias_latipes_hsok
ENSORLG00000019743	polr1c	100	93.447	ENSOMEG00000016527	polr1c	100	93.447	Oryzias_melastigma
ENSORLG00000019743	polr1c	99	70.317	ENSOGAG00000016318	POLR1C	99	70.317	Otolemur_garnettii
ENSORLG00000019743	polr1c	98	70.145	ENSOARG00000007503	POLR1C	99	70.145	Ovis_aries
ENSORLG00000019743	polr1c	99	69.741	ENSPPAG00000043678	POLR1C	99	69.741	Pan_paniscus
ENSORLG00000019743	polr1c	98	70.145	ENSPPRG00000009760	POLR1C	99	70.145	Panthera_pardus
ENSORLG00000019743	polr1c	98	70.145	ENSPTIG00000014813	POLR1C	99	70.145	Panthera_tigris_altaica
ENSORLG00000019743	polr1c	99	69.741	ENSPTRG00000018202	POLR1C	99	69.741	Pan_troglodytes
ENSORLG00000019743	polr1c	99	69.741	ENSPANG00000009025	POLR1C	98	69.741	Papio_anubis
ENSORLG00000019743	polr1c	99	76.437	ENSPKIG00000009858	polr1c	99	76.437	Paramormyrops_kingsleyae
ENSORLG00000019743	polr1c	99	72.622	ENSPSIG00000012580	POLR1C	93	72.622	Pelodiscus_sinensis
ENSORLG00000019743	polr1c	59	30.332	ENSPMGG00000021249	polr2c	81	30.332	Periophthalmus_magnuspinnatus
ENSORLG00000019743	polr1c	99	67.529	ENSPMGG00000012121	polr1c	99	68.103	Periophthalmus_magnuspinnatus
ENSORLG00000019743	polr1c	98	69.565	ENSPEMG00000006970	Polr1c	99	69.565	Peromyscus_maniculatus_bairdii
ENSORLG00000019743	polr1c	60	32.258	ENSPMAG00000004827	polr2c	88	32.258	Petromyzon_marinus
ENSORLG00000019743	polr1c	99	66.286	ENSPMAG00000005560	polr1c	99	66.286	Petromyzon_marinus
ENSORLG00000019743	polr1c	99	71.182	ENSPCIG00000028137	POLR1C	97	71.182	Phascolarctos_cinereus
ENSORLG00000019743	polr1c	99	86.455	ENSPFOG00000014342	POLR1C	99	86.455	Poecilia_formosa
ENSORLG00000019743	polr1c	99	86.455	ENSPFOG00000014357	polr1c	97	86.455	Poecilia_formosa
ENSORLG00000019743	polr1c	62	84.906	ENSPLAG00000004111	polr1c	91	85.388	Poecilia_latipinna
ENSORLG00000019743	polr1c	99	86.455	ENSPMEG00000011877	-	99	86.455	Poecilia_mexicana
ENSORLG00000019743	polr1c	99	86.455	ENSPMEG00000008420	polr1c	99	86.455	Poecilia_mexicana
ENSORLG00000019743	polr1c	99	86.167	ENSPREG00000007985	polr1c	99	86.167	Poecilia_reticulata
ENSORLG00000019743	polr1c	99	69.452	ENSPPYG00000016645	POLR1C	99	69.452	Pongo_abelii
ENSORLG00000019743	polr1c	98	68.696	ENSPCOG00000024628	POLR1C	99	68.696	Propithecus_coquereli
ENSORLG00000019743	polr1c	98	64.928	ENSPVAG00000005689	POLR1C	99	64.928	Pteropus_vampyrus
ENSORLG00000019743	polr1c	100	83.761	ENSPNYG00000003620	polr1c	100	83.761	Pundamilia_nyererei
ENSORLG00000019743	polr1c	99	77.874	ENSPNAG00000008443	polr1c	99	77.874	Pygocentrus_nattereri
ENSORLG00000019743	polr1c	98	69.565	ENSRNOG00000019079	Polr1c	99	69.565	Rattus_norvegicus
ENSORLG00000019743	polr1c	99	69.452	ENSRBIG00000007155	POLR1C	99	69.452	Rhinopithecus_bieti
ENSORLG00000019743	polr1c	99	69.741	ENSRROG00000000257	POLR1C	99	69.741	Rhinopithecus_roxellana
ENSORLG00000019743	polr1c	95	45.075	YPR110C	RPC40	99	45.075	Saccharomyces_cerevisiae
ENSORLG00000019743	polr1c	98	69.565	ENSSBOG00000025735	POLR1C	99	70.323	Saimiri_boliviensis_boliviensis
ENSORLG00000019743	polr1c	99	64.841	ENSSHAG00000014456	POLR1C	99	64.841	Sarcophilus_harrisii
ENSORLG00000019743	polr1c	99	76.657	ENSSFOG00015019860	polr1c	99	76.657	Scleropages_formosus
ENSORLG00000019743	polr1c	99	82.471	ENSSMAG00000018865	polr1c	99	82.471	Scophthalmus_maximus
ENSORLG00000019743	polr1c	99	85.014	ENSSDUG00000015745	polr1c	90	85.014	Seriola_dumerili
ENSORLG00000019743	polr1c	99	84.726	ENSSLDG00000018285	polr1c	90	84.726	Seriola_lalandi_dorsalis
ENSORLG00000019743	polr1c	99	72.701	ENSSPUG00000011822	POLR1C	99	72.701	Sphenodon_punctatus
ENSORLG00000019743	polr1c	99	83.333	ENSSPAG00000022369	polr1c	99	83.333	Stegastes_partitus
ENSORLG00000019743	polr1c	98	69.275	ENSSSCG00000028007	POLR1C	96	70.370	Sus_scrofa
ENSORLG00000019743	polr1c	96	70.833	ENSTGUG00000009159	POLR1C	99	70.833	Taeniopygia_guttata
ENSORLG00000019743	polr1c	99	80.460	ENSTRUG00000006264	polr1c	99	80.460	Takifugu_rubripes
ENSORLG00000019743	polr1c	51	69.540	ENSTBEG00000002254	POLR1C	98	69.540	Tupaia_belangeri
ENSORLG00000019743	polr1c	75	67.954	ENSTTRG00000006344	POLR1C	74	67.954	Tursiops_truncatus
ENSORLG00000019743	polr1c	98	70.145	ENSUAMG00000025602	POLR1C	99	70.145	Ursus_americanus
ENSORLG00000019743	polr1c	98	70.145	ENSUMAG00000005938	POLR1C	99	70.145	Ursus_maritimus
ENSORLG00000019743	polr1c	98	67.536	ENSVVUG00000028922	POLR1C	99	67.536	Vulpes_vulpes
ENSORLG00000019743	polr1c	99	65.043	ENSXETG00000010882	polr1c	99	65.043	Xenopus_tropicalis
ENSORLG00000019743	polr1c	99	85.591	ENSXCOG00000014185	polr1c	99	85.591	Xiphophorus_couchianus
ENSORLG00000019743	polr1c	99	85.879	ENSXMAG00000015076	polr1c	99	85.879	Xiphophorus_maculatus