EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000020340 (Gene tree)
Gene ID: 101166193
Gene Symbol: cmss1
Alias: -
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 23748 bases
Position: chr21:9035155-9058902
Accession: 101166193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000025216	CMS1	PF14617.6	8.3e-37	1	1
ENSORLP00000025216	DEAD	PF00270.29	1.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000025217	-	2591	XM_023951050	ENSORLP00000025216	285 (aa)	XP_023806818	H2N1B7

Gene Model

Click here to download ENSORLG00000020340's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000020340's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000020340	cmss1	100	53.061	ENSG00000184220	CMSS1	98	63.750	Homo_sapiens
ENSORLG00000020340	cmss1	71	83.251	ENSAPOG00000010604	cmss1	96	72.093	Acanthochromis_polyacanthus
ENSORLG00000020340	cmss1	87	57.831	ENSAMEG00000004092	CMSS1	96	57.831	Ailuropoda_melanoleuca
ENSORLG00000020340	cmss1	91	65.779	ENSACIG00000021854	cmss1	98	66.923	Amphilophus_citrinellus
ENSORLG00000020340	cmss1	100	73.702	ENSAOCG00000013361	cmss1	100	73.702	Amphiprion_ocellaris
ENSORLG00000020340	cmss1	100	68.966	ENSAPEG00000005829	cmss1	100	73.103	Amphiprion_percula
ENSORLG00000020340	cmss1	100	67.820	ENSATEG00000008209	cmss1	100	68.966	Anabas_testudineus
ENSORLG00000020340	cmss1	71	62.871	ENSAPLG00000010542	CMSS1	88	62.871	Anas_platyrhynchos
ENSORLG00000020340	cmss1	94	54.779	ENSACAG00000011065	CMSS1	74	64.356	Anolis_carolinensis
ENSORLG00000020340	cmss1	100	50.685	ENSANAG00000023565	CMSS1	100	50.685	Aotus_nancymaae
ENSORLG00000020340	cmss1	100	71.478	ENSACLG00000027294	cmss1	100	71.478	Astatotilapia_calliptera
ENSORLG00000020340	cmss1	100	55.782	ENSAMXG00000002046	cmss1	100	59.596	Astyanax_mexicanus
ENSORLG00000020340	cmss1	100	56.140	ENSBTAG00000013663	CMSS1	100	56.491	Bos_taurus
ENSORLG00000020340	cmss1	100	51.712	ENSCJAG00000000610	CMSS1	100	51.712	Callithrix_jacchus
ENSORLG00000020340	cmss1	71	64.356	ENSCAFG00000009230	CMSS1	84	60.684	Canis_familiaris
ENSORLG00000020340	cmss1	82	60.684	ENSCAFG00020009464	-	85	60.684	Canis_lupus_dingo
ENSORLG00000020340	cmss1	71	61.386	ENSCAFG00020024156	-	63	61.386	Canis_lupus_dingo
ENSORLG00000020340	cmss1	89	58.103	ENSCHIG00000013003	CMSS1	80	63.514	Capra_hircus
ENSORLG00000020340	cmss1	84	60.744	ENSTSYG00000009266	CMSS1	93	60.744	Carlito_syrichta
ENSORLG00000020340	cmss1	75	52.036	ENSCAPG00000013584	CMSS1	88	56.614	Cavia_aperea
ENSORLG00000020340	cmss1	100	56.643	ENSCPOG00000014680	CMSS1	100	51.839	Cavia_porcellus
ENSORLG00000020340	cmss1	100	52.055	ENSCCAG00000034685	CMSS1	100	52.055	Cebus_capucinus
ENSORLG00000020340	cmss1	100	53.741	ENSCATG00000031980	CMSS1	100	53.425	Cercocebus_atys
ENSORLG00000020340	cmss1	78	59.389	ENSCLAG00000011241	CMSS1	98	58.952	Chinchilla_lanigera
ENSORLG00000020340	cmss1	78	60.262	ENSCSAG00000006024	CMSS1	93	60.262	Chlorocebus_sabaeus
ENSORLG00000020340	cmss1	100	43.158	ENSCHOG00000012098	CMSS1	100	43.158	Choloepus_hoffmanni
ENSORLG00000020340	cmss1	68	46.939	ENSCING00000014848	-	99	47.059	Ciona_intestinalis
ENSORLG00000020340	cmss1	100	56.207	ENSCANG00000031337	CMSS1	100	55.208	Colobus_angolensis_palliatus
ENSORLG00000020340	cmss1	100	53.242	ENSCGRG00001014305	Cmss1	100	52.778	Cricetulus_griseus_chok1gshd
ENSORLG00000020340	cmss1	84	58.678	ENSCGRG00000006722	Cmss1	94	58.678	Cricetulus_griseus_crigri
ENSORLG00000020340	cmss1	100	67.347	ENSCSEG00000004958	cmss1	100	67.347	Cynoglossus_semilaevis
ENSORLG00000020340	cmss1	100	72.664	ENSCVAG00000005039	cmss1	100	72.664	Cyprinodon_variegatus
ENSORLG00000020340	cmss1	100	56.949	ENSDARG00000112579	cmss1	100	59.044	Danio_rerio
ENSORLG00000020340	cmss1	78	60.262	ENSDNOG00000040418	CMSS1	73	64.356	Dasypus_novemcinctus
ENSORLG00000020340	cmss1	100	54.704	ENSDORG00000010461	Cmss1	100	55.088	Dipodomys_ordii
ENSORLG00000020340	cmss1	85	55.422	ENSEASG00005010966	CMSS1	92	62.871	Equus_asinus_asinus
ENSORLG00000020340	cmss1	81	56.327	ENSECAG00000015662	CMSS1	89	62.376	Equus_caballus
ENSORLG00000020340	cmss1	100	38.596	ENSEEUG00000007624	-	100	38.246	Erinaceus_europaeus
ENSORLG00000020340	cmss1	100	58.333	ENSELUG00000019459	cmss1	100	59.000	Esox_lucius
ENSORLG00000020340	cmss1	100	56.446	ENSFCAG00000044577	CMSS1	100	56.842	Felis_catus
ENSORLG00000020340	cmss1	71	62.376	ENSFALG00000005816	CMSS1	85	62.376	Ficedula_albicollis
ENSORLG00000020340	cmss1	71	64.356	ENSFDAG00000012577	CMSS1	89	64.356	Fukomys_damarensis
ENSORLG00000020340	cmss1	80	79.310	ENSFHEG00000012008	cmss1	95	79.310	Fundulus_heteroclitus
ENSORLG00000020340	cmss1	99	63.636	ENSGMOG00000016729	cmss1	100	64.561	Gadus_morhua
ENSORLG00000020340	cmss1	95	56.458	ENSGALG00000015267	CMSS1	92	59.504	Gallus_gallus
ENSORLG00000020340	cmss1	92	72.519	ENSGAFG00000021217	cmss1	97	73.152	Gambusia_affinis
ENSORLG00000020340	cmss1	99	67.254	ENSGACG00000002798	cmss1	100	68.881	Gasterosteus_aculeatus
ENSORLG00000020340	cmss1	71	62.871	ENSGAGG00000019861	CMSS1	79	62.871	Gopherus_agassizii
ENSORLG00000020340	cmss1	78	59.825	ENSGGOG00000014125	CMSS1	88	59.825	Gorilla_gorilla
ENSORLG00000020340	cmss1	100	72.069	ENSHBUG00000008431	cmss1	100	71.379	Haplochromis_burtoni
ENSORLG00000020340	cmss1	82	59.583	ENSHGLG00000019481	CMSS1	98	58.750	Heterocephalus_glaber_female
ENSORLG00000020340	cmss1	82	59.583	ENSHGLG00100010314	CMSS1	96	58.750	Heterocephalus_glaber_male
ENSORLG00000020340	cmss1	100	65.424	ENSHCOG00000003222	cmss1	100	64.407	Hippocampus_comes
ENSORLG00000020340	cmss1	100	61.224	ENSIPUG00000011591	cmss1	100	62.069	Ictalurus_punctatus
ENSORLG00000020340	cmss1	100	54.266	ENSSTOG00000019366	CMSS1	100	53.684	Ictidomys_tridecemlineatus
ENSORLG00000020340	cmss1	100	52.740	ENSJJAG00000014894	Cmss1	100	54.386	Jaculus_jaculus
ENSORLG00000020340	cmss1	71	72.906	ENSKMAG00000002390	cmss1	96	63.953	Kryptolebias_marmoratus
ENSORLG00000020340	cmss1	87	69.076	ENSLBEG00000006298	cmss1	100	68.675	Labrus_bergylta
ENSORLG00000020340	cmss1	71	65.347	ENSLACG00000009293	CMSS1	88	65.347	Latimeria_chalumnae
ENSORLG00000020340	cmss1	100	56.643	ENSLOCG00000009391	cmss1	100	55.944	Lepisosteus_oculatus
ENSORLG00000020340	cmss1	70	64.000	ENSLAFG00000017509	CMSS1	89	64.356	Loxodonta_africana
ENSORLG00000020340	cmss1	100	54.082	ENSMFAG00000045006	CMSS1	100	53.082	Macaca_fascicularis
ENSORLG00000020340	cmss1	100	53.741	ENSMMUG00000002939	CMSS1	100	52.740	Macaca_mulatta
ENSORLG00000020340	cmss1	100	54.082	ENSMNEG00000031315	CMSS1	100	53.082	Macaca_nemestrina
ENSORLG00000020340	cmss1	100	54.082	ENSMLEG00000033660	CMSS1	100	53.082	Mandrillus_leucophaeus
ENSORLG00000020340	cmss1	100	71.525	ENSMAMG00000017176	cmss1	100	72.759	Mastacembelus_armatus
ENSORLG00000020340	cmss1	100	71.478	ENSMZEG00005021886	cmss1	100	71.478	Maylandia_zebra
ENSORLG00000020340	cmss1	71	63.861	ENSMGAG00000014360	CMSS1	89	63.861	Meleagris_gallopavo
ENSORLG00000020340	cmss1	100	40.625	ENSMAUG00000020609	Cmss1	100	39.236	Mesocricetus_auratus
ENSORLG00000020340	cmss1	100	55.479	ENSMICG00000048977	CMSS1	100	54.795	Microcebus_murinus
ENSORLG00000020340	cmss1	100	53.497	ENSMOCG00000021937	Cmss1	100	52.281	Microtus_ochrogaster
ENSORLG00000020340	cmss1	71	78.325	ENSMMOG00000019794	cmss1	97	69.170	Mola_mola
ENSORLG00000020340	cmss1	87	56.226	ENSMODG00000002275	CMSS1	88	60.256	Monodelphis_domestica
ENSORLG00000020340	cmss1	100	72.260	ENSMALG00000004250	cmss1	100	71.233	Monopterus_albus
ENSORLG00000020340	cmss1	100	54.895	MGP_CAROLIEiJ_G0020824	Cmss1	100	52.632	Mus_caroli
ENSORLG00000020340	cmss1	100	54.895	ENSMUSG00000022748	Cmss1	100	52.632	Mus_musculus
ENSORLG00000020340	cmss1	100	54.035	MGP_PahariEiJ_G0016524	Cmss1	100	52.281	Mus_pahari
ENSORLG00000020340	cmss1	100	54.196	MGP_SPRETEiJ_G0021724	Cmss1	100	51.930	Mus_spretus
ENSORLG00000020340	cmss1	82	60.426	ENSMPUG00000011324	CMSS1	90	60.426	Mustela_putorius_furo
ENSORLG00000020340	cmss1	70	62.871	ENSMLUG00000001131	CMSS1	89	60.169	Myotis_lucifugus
ENSORLG00000020340	cmss1	100	54.355	ENSNGAG00000020316	Cmss1	100	52.982	Nannospalax_galili
ENSORLG00000020340	cmss1	100	71.821	ENSNBRG00000003095	cmss1	100	71.478	Neolamprologus_brichardi
ENSORLG00000020340	cmss1	100	53.082	ENSNLEG00000034172	CMSS1	100	53.082	Nomascus_leucogenys
ENSORLG00000020340	cmss1	78	54.299	ENSMEUG00000014505	CMSS1	96	54.751	Notamacropus_eugenii
ENSORLG00000020340	cmss1	100	52.740	ENSOPRG00000002986	CMSS1	100	52.055	Ochotona_princeps
ENSORLG00000020340	cmss1	100	46.316	ENSODEG00000009446	-	100	45.263	Octodon_degus
ENSORLG00000020340	cmss1	100	47.945	ENSODEG00000001853	-	100	50.000	Octodon_degus
ENSORLG00000020340	cmss1	100	57.692	ENSODEG00000005226	-	100	55.903	Octodon_degus
ENSORLG00000020340	cmss1	100	52.055	ENSODEG00000003558	-	100	53.472	Octodon_degus
ENSORLG00000020340	cmss1	91	73.180	ENSONIG00000006678	cmss1	100	74.330	Oreochromis_niloticus
ENSORLG00000020340	cmss1	80	58.650	ENSOANG00000007529	CMSS1	87	62.871	Ornithorhynchus_anatinus
ENSORLG00000020340	cmss1	83	60.169	ENSOCUG00000025366	CMSS1	85	60.169	Oryctolagus_cuniculus
ENSORLG00000020340	cmss1	93	78.030	ENSORLG00020012235	cmss1	97	77.132	Oryzias_latipes_hni
ENSORLG00000020340	cmss1	92	82.397	ENSORLG00015015551	cmss1	99	82.197	Oryzias_latipes_hsok
ENSORLG00000020340	cmss1	100	88.235	ENSOMEG00000012555	cmss1	100	87.889	Oryzias_melastigma
ENSORLG00000020340	cmss1	71	64.356	ENSOGAG00000002045	CMSS1	89	64.356	Otolemur_garnettii
ENSORLG00000020340	cmss1	89	57.874	ENSOARG00000017899	CMSS1	76	63.229	Ovis_aries
ENSORLG00000020340	cmss1	78	59.825	ENSPPAG00000038515	CMSS1	84	59.825	Pan_paniscus
ENSORLG00000020340	cmss1	100	56.446	ENSPPRG00000016767	CMSS1	100	56.842	Panthera_pardus
ENSORLG00000020340	cmss1	100	56.098	ENSPTIG00000018274	CMSS1	100	55.088	Panthera_tigris_altaica
ENSORLG00000020340	cmss1	100	53.401	ENSPTRG00000015157	CMSS1	93	59.825	Pan_troglodytes
ENSORLG00000020340	cmss1	78	60.000	ENSPANG00000019980	CMSS1	92	60.000	Papio_anubis
ENSORLG00000020340	cmss1	96	60.507	ENSPKIG00000012609	cmss1	96	62.308	Paramormyrops_kingsleyae
ENSORLG00000020340	cmss1	71	64.851	ENSPSIG00000003849	CMSS1	88	64.851	Pelodiscus_sinensis
ENSORLG00000020340	cmss1	71	77.941	ENSPMGG00000010286	cmss1	88	77.941	Periophthalmus_magnuspinnatus
ENSORLG00000020340	cmss1	100	55.439	ENSPEMG00000016384	Cmss1	100	55.439	Peromyscus_maniculatus_bairdii
ENSORLG00000020340	cmss1	72	51.471	ENSPMAG00000001146	cmss1	99	51.724	Petromyzon_marinus
ENSORLG00000020340	cmss1	95	55.720	ENSPCIG00000015656	CMSS1	94	58.468	Phascolarctos_cinereus
ENSORLG00000020340	cmss1	100	72.664	ENSPFOG00000016849	cmss1	100	73.356	Poecilia_formosa
ENSORLG00000020340	cmss1	100	72.318	ENSPLAG00000008323	cmss1	100	73.010	Poecilia_latipinna
ENSORLG00000020340	cmss1	100	73.702	ENSPMEG00000021020	cmss1	100	74.394	Poecilia_mexicana
ENSORLG00000020340	cmss1	90	75.096	ENSPREG00000007618	cmss1	89	75.096	Poecilia_reticulata
ENSORLG00000020340	cmss1	100	52.055	ENSPPYG00000013606	CMSS1	100	52.055	Pongo_abelii
ENSORLG00000020340	cmss1	100	57.193	ENSPCOG00000020035	CMSS1	100	56.842	Propithecus_coquereli
ENSORLG00000020340	cmss1	100	48.432	ENSPVAG00000017031	CMSS1	100	47.368	Pteropus_vampyrus
ENSORLG00000020340	cmss1	91	71.321	ENSPNYG00000013428	cmss1	97	71.321	Pundamilia_nyererei
ENSORLG00000020340	cmss1	100	59.184	ENSPNAG00000007912	cmss1	100	59.122	Pygocentrus_nattereri
ENSORLG00000020340	cmss1	71	62.376	ENSRNOG00000027888	Cmss1	79	62.376	Rattus_norvegicus
ENSORLG00000020340	cmss1	100	53.082	ENSRBIG00000037931	CMSS1	100	53.082	Rhinopithecus_bieti
ENSORLG00000020340	cmss1	100	53.082	ENSRROG00000042910	CMSS1	100	53.082	Rhinopithecus_roxellana
ENSORLG00000020340	cmss1	78	60.699	ENSSBOG00000030980	CMSS1	91	57.851	Saimiri_boliviensis_boliviensis
ENSORLG00000020340	cmss1	71	64.851	ENSSHAG00000009321	CMSS1	80	64.851	Sarcophilus_harrisii
ENSORLG00000020340	cmss1	100	62.626	ENSSFOG00015001509	cmss1	100	63.051	Scleropages_formosus
ENSORLG00000020340	cmss1	100	71.478	ENSSMAG00000001653	cmss1	100	72.165	Scophthalmus_maximus
ENSORLG00000020340	cmss1	100	75.433	ENSSDUG00000007719	cmss1	100	75.433	Seriola_dumerili
ENSORLG00000020340	cmss1	99	68.707	ENSSLDG00000012300	cmss1	95	68.996	Seriola_lalandi_dorsalis
ENSORLG00000020340	cmss1	100	45.965	ENSSARG00000003584	CMSS1	100	43.478	Sorex_araneus
ENSORLG00000020340	cmss1	71	62.376	ENSSPUG00000003865	CMSS1	89	62.376	Sphenodon_punctatus
ENSORLG00000020340	cmss1	94	70.849	ENSSPAG00000019182	cmss1	78	71.705	Stegastes_partitus
ENSORLG00000020340	cmss1	100	55.088	ENSSSCG00000011970	CMSS1	100	54.737	Sus_scrofa
ENSORLG00000020340	cmss1	75	60.181	ENSTGUG00000013635	CMSS1	88	62.376	Taeniopygia_guttata
ENSORLG00000020340	cmss1	100	68.070	ENSTRUG00000015265	cmss1	100	68.403	Takifugu_rubripes
ENSORLG00000020340	cmss1	95	62.182	ENSTNIG00000002880	cmss1	94	63.462	Tetraodon_nigroviridis
ENSORLG00000020340	cmss1	100	40.000	ENSTBEG00000016722	CMSS1	72	45.050	Tupaia_belangeri
ENSORLG00000020340	cmss1	100	54.737	ENSTTRG00000001562	CMSS1	100	54.737	Tursiops_truncatus
ENSORLG00000020340	cmss1	97	54.093	ENSUAMG00000024209	CMSS1	95	61.739	Ursus_americanus
ENSORLG00000020340	cmss1	81	57.959	ENSUMAG00000001983	CMSS1	90	60.256	Ursus_maritimus
ENSORLG00000020340	cmss1	100	43.860	ENSVPAG00000000263	CMSS1	57	63.750	Vicugna_pacos
ENSORLG00000020340	cmss1	70	64.000	ENSVVUG00000021647	-	95	60.256	Vulpes_vulpes
ENSORLG00000020340	cmss1	71	63.366	ENSVVUG00000007776	-	80	63.366	Vulpes_vulpes
ENSORLG00000020340	cmss1	100	53.310	ENSXETG00000011858	cmss1	100	51.903	Xenopus_tropicalis
ENSORLG00000020340	cmss1	95	71.071	ENSXCOG00000018724	cmss1	89	73.946	Xiphophorus_couchianus
ENSORLG00000020340	cmss1	92	71.852	ENSXMAG00000011243	cmss1	98	73.946	Xiphophorus_maculatus