EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000020583 (Gene tree)
Gene ID: 101172885
Gene Symbol: gar1
Alias: -
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 11020 bases
Position: chr10:3855549-3866568
Accession: 101172885
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000025496	Gar1	PF04410.14	5.2e-39	1	1
ENSORLP00000025499	Gar1	PF04410.14	9e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000025497	-	2065	XM_004086492	ENSORLP00000025496	220 (aa)	XP_004086540	H2N227
ENSORLT00000025500	-	852	-	ENSORLP00000025499	283 (aa)	-	H2N230

Gene Model

Click here to download ENSORLG00000020583's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000020583's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000020583	gar1	67	89.116	ENSAOCG00000020947	gar1	50	98.148	Amphiprion_ocellaris
ENSORLG00000020583	gar1	67	89.116	ENSAPEG00000001676	gar1	50	98.148	Amphiprion_percula
ENSORLG00000020583	gar1	62	89.706	ENSANAG00000021608	GAR1	69	82.667	Aotus_nancymaae
ENSORLG00000020583	gar1	50	97.273	ENSACLG00000010029	gar1	65	88.356	Astatotilapia_calliptera
ENSORLG00000020583	gar1	50	91.818	ENSAMXG00000015752	gar1	70	81.875	Astyanax_mexicanus
ENSORLG00000020583	gar1	62	89.706	ENSCJAG00000004041	GAR1	69	82.667	Callithrix_jacchus
ENSORLG00000020583	gar1	50	92.727	ENSCHIG00000016026	-	51	94.393	Capra_hircus
ENSORLG00000020583	gar1	62	89.706	ENSCCAG00000029372	GAR1	69	82.667	Cebus_capucinus
ENSORLG00000020583	gar1	50	92.727	ENSCATG00000021854	GAR1	54	94.393	Cercocebus_atys
ENSORLG00000020583	gar1	50	91.818	ENSCLAG00000005335	GAR1	69	96.364	Chinchilla_lanigera
ENSORLG00000020583	gar1	50	94.545	ENSEASG00005004658	GAR1	50	96.262	Equus_asinus_asinus
ENSORLG00000020583	gar1	50	93.636	ENSECAG00000013624	GAR1	54	95.327	Equus_caballus
ENSORLG00000020583	gar1	68	51.678	ENSFCAG00000025841	-	50	60.748	Felis_catus
ENSORLG00000020583	gar1	50	96.396	ENSFHEG00000008068	gar1	50	96.296	Fundulus_heteroclitus
ENSORLG00000020583	gar1	57	90.400	ENSIPUG00000003194	gar1	63	87.970	Ictalurus_punctatus
ENSORLG00000020583	gar1	50	91.743	ENSSTOG00000005577	GAR1	71	96.364	Ictidomys_tridecemlineatus
ENSORLG00000020583	gar1	50	95.495	ENSKMAG00000010402	gar1	51	96.296	Kryptolebias_marmoratus
ENSORLG00000020583	gar1	77	84.298	ENSLACG00000003306	GAR1	64	87.736	Latimeria_chalumnae
ENSORLG00000020583	gar1	54	88.983	ENSLOCG00000011711	GAR1	68	87.586	Lepisosteus_oculatus
ENSORLG00000020583	gar1	50	97.273	ENSMZEG00005001281	gar1	65	88.356	Maylandia_zebra
ENSORLG00000020583	gar1	78	72.515	ENSMALG00000009672	gar1	50	94.444	Monopterus_albus
ENSORLG00000020583	gar1	50	92.727	ENSMUSG00000028010	Gar1	96	94.805	Mus_musculus
ENSORLG00000020583	gar1	50	92.727	MGP_PahariEiJ_G0027076	Gar1	96	94.805	Mus_pahari
ENSORLG00000020583	gar1	50	92.727	MGP_SPRETEiJ_G0026580	Gar1	96	94.805	Mus_spretus
ENSORLG00000020583	gar1	50	92.727	ENSNGAG00000008268	Gar1	71	96.364	Nannospalax_galili
ENSORLG00000020583	gar1	50	92.727	ENSNLEG00000016578	GAR1	50	94.393	Nomascus_leucogenys
ENSORLG00000020583	gar1	69	86.093	ENSODEG00000011083	GAR1	59	90.769	Octodon_degus
ENSORLG00000020583	gar1	62	88.971	ENSOCUG00000003901	GAR1	70	82.000	Oryctolagus_cuniculus
ENSORLG00000020583	gar1	100	100.000	ENSORLG00020008602	gar1	100	100.000	Oryzias_latipes_hni
ENSORLG00000020583	gar1	100	99.091	ENSORLG00015017643	gar1	100	99.091	Oryzias_latipes_hsok
ENSORLG00000020583	gar1	66	90.957	ENSOMEG00000007911	GAR1	69	90.476	Oryzias_melastigma
ENSORLG00000020583	gar1	69	82.119	ENSPPAG00000014081	GAR1	54	94.393	Pan_paniscus
ENSORLG00000020583	gar1	50	92.727	ENSPTRG00000016364	GAR1	54	94.393	Pan_troglodytes
ENSORLG00000020583	gar1	50	96.364	ENSPNAG00000019686	gar1	53	94.615	Pygocentrus_nattereri
ENSORLG00000020583	gar1	51	76.786	ENSRBIG00000042411	-	52	77.570	Rhinopithecus_bieti
ENSORLG00000020583	gar1	51	76.786	ENSRROG00000044348	-	51	77.570	Rhinopithecus_roxellana
ENSORLG00000020583	gar1	50	92.727	ENSRROG00000028454	GAR1	54	94.393	Rhinopithecus_roxellana
ENSORLG00000020583	gar1	62	88.971	ENSSBOG00000024785	GAR1	68	84.247	Saimiri_boliviensis_boliviensis
ENSORLG00000020583	gar1	62	89.431	ENSSFOG00015013198	gar1	69	88.618	Scleropages_formosus
ENSORLG00000020583	gar1	50	92.727	ENSSSCG00000009137	GAR1	53	94.393	Sus_scrofa