EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000021862 (Gene tree)
Gene ID: 101173217
Gene Symbol: snrpb
Alias: -
Full Name: small nuclear ribonucleoprotein-associated protein B'
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 6818 bases
Position: chr5:18124622-18131439
Accession: 101173217
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000032618	LSM	PF01423.22	7.4e-19	1	1
ENSORLP00000011740	LSM	PF01423.22	8.2e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000030252	-	4321	XM_011475173	ENSORLP00000032618	240 (aa)	XP_011473475	UPI0000E9CF89
ENSORLT00000011741	-	804	-	ENSORLP00000011740	267 (aa)	-	H2M017

Gene Model

Click here to download ENSORLG00000021862's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000021862's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000021862	snrpb	69	94.643	ENSG00000125835	SNRPB	74	98.077	Homo_sapiens
ENSORLG00000021862	snrpb	100	99.167	ENSAPOG00000019606	snrpb	82	99.167	Acanthochromis_polyacanthus
ENSORLG00000021862	snrpb	69	94.611	ENSAMEG00000011353	SNRPB	74	92.265	Ailuropoda_melanoleuca
ENSORLG00000021862	snrpb	93	99.099	ENSACIG00000014480	snrpb	99	99.099	Amphilophus_citrinellus
ENSORLG00000021862	snrpb	100	98.750	ENSAOCG00000006876	snrpb	100	98.750	Amphiprion_ocellaris
ENSORLG00000021862	snrpb	100	98.750	ENSAPEG00000021585	snrpb	100	98.750	Amphiprion_percula
ENSORLG00000021862	snrpb	100	98.333	ENSATEG00000009836	snrpb	100	98.333	Anabas_testudineus
ENSORLG00000021862	snrpb	66	95.625	ENSACAG00000002053	SNRPB	77	92.179	Anolis_carolinensis
ENSORLG00000021862	snrpb	69	87.500	ENSANAG00000036271	-	73	84.530	Aotus_nancymaae
ENSORLG00000021862	snrpb	69	94.643	ENSANAG00000024443	-	78	92.265	Aotus_nancymaae
ENSORLG00000021862	snrpb	100	99.167	ENSACLG00000014707	snrpb	100	99.167	Astatotilapia_calliptera
ENSORLG00000021862	snrpb	69	99.398	ENSAMXG00000029434	snrpb	76	97.765	Astyanax_mexicanus
ENSORLG00000021862	snrpb	85	85.577	ENSBTAG00000001038	SNRPB	78	92.265	Bos_taurus
ENSORLG00000021862	snrpb	89	83.796	ENSCJAG00000023097	-	74	85.876	Callithrix_jacchus
ENSORLG00000021862	snrpb	69	94.643	ENSCJAG00000020971	-	78	92.265	Callithrix_jacchus
ENSORLG00000021862	snrpb	60	84.247	ENSCAFG00000031109	-	74	81.564	Canis_familiaris
ENSORLG00000021862	snrpb	69	94.643	ENSCAFG00000006693	-	78	92.265	Canis_familiaris
ENSORLG00000021862	snrpb	69	94.643	ENSCAFG00020016981	-	75	92.265	Canis_lupus_dingo
ENSORLG00000021862	snrpb	69	94.643	ENSCHIG00000025449	-	78	92.265	Capra_hircus
ENSORLG00000021862	snrpb	96	66.379	ENSTSYG00000032303	-	65	72.626	Carlito_syrichta
ENSORLG00000021862	snrpb	69	94.643	ENSTSYG00000014498	-	78	92.265	Carlito_syrichta
ENSORLG00000021862	snrpb	69	94.611	ENSCAPG00000012669	SNRPB	79	92.265	Cavia_aperea
ENSORLG00000021862	snrpb	69	94.643	ENSCPOG00000039408	SNRPB	78	92.265	Cavia_porcellus
ENSORLG00000021862	snrpb	53	83.465	ENSCCAG00000035140	-	89	84.314	Cebus_capucinus
ENSORLG00000021862	snrpb	69	94.643	ENSCCAG00000026002	SNRPB	78	92.265	Cebus_capucinus
ENSORLG00000021862	snrpb	69	94.643	ENSCATG00000030230	SNRPB	78	92.265	Cercocebus_atys
ENSORLG00000021862	snrpb	69	94.643	ENSCLAG00000012442	SNRPB	76	92.265	Chinchilla_lanigera
ENSORLG00000021862	snrpb	69	94.643	ENSCSAG00000010840	SNRPB	78	92.265	Chlorocebus_sabaeus
ENSORLG00000021862	snrpb	69	96.429	ENSCPBG00000026801	SNRPB	79	93.370	Chrysemys_picta_bellii
ENSORLG00000021862	snrpb	69	94.643	ENSCANG00000019461	SNRPB	78	92.265	Colobus_angolensis_palliatus
ENSORLG00000021862	snrpb	69	94.643	ENSCGRG00001023046	Snrpb	78	92.265	Cricetulus_griseus_chok1gshd
ENSORLG00000021862	snrpb	67	94.479	ENSCGRG00000010423	Snrpb	80	92.179	Cricetulus_griseus_crigri
ENSORLG00000021862	snrpb	100	97.500	ENSCSEG00000020328	snrpb	100	97.500	Cynoglossus_semilaevis
ENSORLG00000021862	snrpb	69	98.795	ENSDARG00000011125	snrpb	75	97.207	Danio_rerio
ENSORLG00000021862	snrpb	69	94.643	ENSDNOG00000015545	-	75	92.265	Dasypus_novemcinctus
ENSORLG00000021862	snrpb	69	88.690	ENSDNOG00000007896	-	74	87.293	Dasypus_novemcinctus
ENSORLG00000021862	snrpb	67	94.444	ENSDORG00000029558	Snrpb	79	92.265	Dipodomys_ordii
ENSORLG00000021862	snrpb	77	62.437	FBgn0262601	SmB	95	59.162	Drosophila_melanogaster
ENSORLG00000021862	snrpb	69	73.810	ENSETEG00000006830	SNRPB	79	72.928	Echinops_telfairi
ENSORLG00000021862	snrpb	73	81.356	ENSEBUG00000007467	SNRPB	75	78.261	Eptatretus_burgeri
ENSORLG00000021862	snrpb	69	94.048	ENSEASG00005012991	SNRPB	78	91.713	Equus_asinus_asinus
ENSORLG00000021862	snrpb	69	94.643	ENSECAG00000011944	SNRPB	79	92.179	Equus_caballus
ENSORLG00000021862	snrpb	69	94.643	ENSEEUG00000015568	SNRPB	64	92.265	Erinaceus_europaeus
ENSORLG00000021862	snrpb	99	97.046	ENSELUG00000014564	snrpb	99	97.046	Esox_lucius
ENSORLG00000021862	snrpb	69	94.643	ENSFCAG00000034090	-	78	92.265	Felis_catus
ENSORLG00000021862	snrpb	66	96.250	ENSFALG00000004866	SNRPB	77	93.296	Ficedula_albicollis
ENSORLG00000021862	snrpb	69	94.643	ENSFDAG00000009937	SNRPB	78	92.265	Fukomys_damarensis
ENSORLG00000021862	snrpb	69	96.429	ENSGALG00000035421	SNRPN	75	93.370	Gallus_gallus
ENSORLG00000021862	snrpb	94	98.230	ENSGAFG00000019558	snrpb	99	98.230	Gambusia_affinis
ENSORLG00000021862	snrpb	100	97.500	ENSGACG00000003262	snrpb	100	97.500	Gasterosteus_aculeatus
ENSORLG00000021862	snrpb	69	96.429	ENSGAGG00000001308	SNRPB	75	93.370	Gopherus_agassizii
ENSORLG00000021862	snrpb	69	94.643	ENSGGOG00000016138	SNRPB	78	92.265	Gorilla_gorilla
ENSORLG00000021862	snrpb	100	99.167	ENSHBUG00000008369	snrpb	100	99.167	Haplochromis_burtoni
ENSORLG00000021862	snrpb	63	86.000	ENSHGLG00000016505	-	86	80.447	Heterocephalus_glaber_female
ENSORLG00000021862	snrpb	69	94.643	ENSHGLG00000016241	-	78	92.265	Heterocephalus_glaber_female
ENSORLG00000021862	snrpb	69	94.643	ENSHGLG00100012877	-	78	92.265	Heterocephalus_glaber_male
ENSORLG00000021862	snrpb	63	86.000	ENSHGLG00100004178	-	86	80.447	Heterocephalus_glaber_male
ENSORLG00000021862	snrpb	100	97.917	ENSHCOG00000014888	snrpb	100	97.917	Hippocampus_comes
ENSORLG00000021862	snrpb	69	98.795	ENSIPUG00000024569	SNRPB	74	98.286	Ictalurus_punctatus
ENSORLG00000021862	snrpb	52	94.203	ENSSTOG00000027821	-	63	94.203	Ictidomys_tridecemlineatus
ENSORLG00000021862	snrpb	69	92.857	ENSSTOG00000033664	-	75	90.608	Ictidomys_tridecemlineatus
ENSORLG00000021862	snrpb	69	94.643	ENSJJAG00000024170	Snrpb	78	92.265	Jaculus_jaculus
ENSORLG00000021862	snrpb	95	98.684	ENSKMAG00000014494	snrpb	93	98.684	Kryptolebias_marmoratus
ENSORLG00000021862	snrpb	100	98.333	ENSLBEG00000005678	snrpb	100	98.333	Labrus_bergylta
ENSORLG00000021862	snrpb	75	93.989	ENSLACG00000011459	SNRPB	75	93.370	Latimeria_chalumnae
ENSORLG00000021862	snrpb	69	99.398	ENSLOCG00000002687	snrpb	74	98.857	Lepisosteus_oculatus
ENSORLG00000021862	snrpb	69	90.419	ENSLAFG00000017588	SNRPB	78	88.398	Loxodonta_africana
ENSORLG00000021862	snrpb	69	94.643	ENSMFAG00000038756	SNRPB	78	92.265	Macaca_fascicularis
ENSORLG00000021862	snrpb	69	94.643	ENSMMUG00000010050	SNRPB	78	92.265	Macaca_mulatta
ENSORLG00000021862	snrpb	69	94.643	ENSMNEG00000027954	SNRPB	78	92.265	Macaca_nemestrina
ENSORLG00000021862	snrpb	69	94.643	ENSMLEG00000022346	SNRPB	78	92.265	Mandrillus_leucophaeus
ENSORLG00000021862	snrpb	99	99.163	ENSMAMG00000009294	snrpb	97	99.163	Mastacembelus_armatus
ENSORLG00000021862	snrpb	100	99.167	ENSMZEG00005011856	snrpb	100	99.167	Maylandia_zebra
ENSORLG00000021862	snrpb	69	94.643	ENSMICG00000016519	SNRPB	78	92.265	Microcebus_murinus
ENSORLG00000021862	snrpb	74	83.425	ENSMICG00000015983	-	83	82.320	Microcebus_murinus
ENSORLG00000021862	snrpb	69	94.048	ENSMOCG00000002892	-	78	91.713	Microtus_ochrogaster
ENSORLG00000021862	snrpb	58	78.417	ENSMOCG00000021362	-	75	74.860	Microtus_ochrogaster
ENSORLG00000021862	snrpb	95	98.238	ENSMMOG00000013226	snrpb	97	98.238	Mola_mola
ENSORLG00000021862	snrpb	100	98.333	ENSMALG00000020839	snrpb	81	98.333	Monopterus_albus
ENSORLG00000021862	snrpb	69	94.643	MGP_CAROLIEiJ_G0024293	Snrpb	74	98.077	Mus_caroli
ENSORLG00000021862	snrpb	69	94.643	ENSMUSG00000027404	Snrpb	74	98.077	Mus_musculus
ENSORLG00000021862	snrpb	69	94.643	MGP_PahariEiJ_G0025738	Snrpb	74	98.077	Mus_pahari
ENSORLG00000021862	snrpb	69	94.643	MGP_SPRETEiJ_G0025213	Snrpb	73	98.077	Mus_spretus
ENSORLG00000021862	snrpb	69	94.643	ENSMPUG00000009283	SNRPB	78	92.265	Mustela_putorius_furo
ENSORLG00000021862	snrpb	69	91.071	ENSMLUG00000016951	SNRPB	75	88.950	Myotis_lucifugus
ENSORLG00000021862	snrpb	69	94.643	ENSNGAG00000012051	Snrpb	78	92.265	Nannospalax_galili
ENSORLG00000021862	snrpb	95	96.930	ENSNBRG00000006353	snrpb	87	96.930	Neolamprologus_brichardi
ENSORLG00000021862	snrpb	69	94.643	ENSNLEG00000029067	SNRPB	76	92.265	Nomascus_leucogenys
ENSORLG00000021862	snrpb	69	94.611	ENSMEUG00000015625	SNRPB	80	92.265	Notamacropus_eugenii
ENSORLG00000021862	snrpb	69	94.643	ENSODEG00000004305	-	78	92.265	Octodon_degus
ENSORLG00000021862	snrpb	69	89.286	ENSODEG00000016060	-	76	87.293	Octodon_degus
ENSORLG00000021862	snrpb	100	99.167	ENSONIG00000000248	snrpb	100	99.167	Oreochromis_niloticus
ENSORLG00000021862	snrpb	69	94.643	ENSOCUG00000014042	-	75	92.265	Oryctolagus_cuniculus
ENSORLG00000021862	snrpb	69	92.262	ENSOCUG00000028215	-	75	90.055	Oryctolagus_cuniculus
ENSORLG00000021862	snrpb	88	64.486	ENSOCUG00000026813	-	78	62.778	Oryctolagus_cuniculus
ENSORLG00000021862	snrpb	74	88.333	ENSOCUG00000022423	-	92	86.592	Oryctolagus_cuniculus
ENSORLG00000021862	snrpb	89	87.097	ENSOCUG00000021456	-	75	88.398	Oryctolagus_cuniculus
ENSORLG00000021862	snrpb	69	94.643	ENSOGAG00000016149	SNRPB	75	92.265	Otolemur_garnettii
ENSORLG00000021862	snrpb	69	94.643	ENSOARG00000006740	SNRPB	78	92.265	Ovis_aries
ENSORLG00000021862	snrpb	69	94.643	ENSPPAG00000036314	SNRPB	78	92.265	Pan_paniscus
ENSORLG00000021862	snrpb	69	94.643	ENSPPRG00000003233	-	78	92.265	Panthera_pardus
ENSORLG00000021862	snrpb	69	94.611	ENSPTIG00000007468	SNRPB	78	92.265	Panthera_tigris_altaica
ENSORLG00000021862	snrpb	69	94.643	ENSPTRG00000013176	SNRPB	78	92.265	Pan_troglodytes
ENSORLG00000021862	snrpb	69	94.643	ENSPANG00000020362	SNRPB	75	92.265	Papio_anubis
ENSORLG00000021862	snrpb	69	98.193	ENSPKIG00000002865	snrpb	74	97.143	Paramormyrops_kingsleyae
ENSORLG00000021862	snrpb	69	96.407	ENSPSIG00000014125	SNRPB	74	93.370	Pelodiscus_sinensis
ENSORLG00000021862	snrpb	73	97.143	ENSPMGG00000016349	snrpb	77	96.089	Periophthalmus_magnuspinnatus
ENSORLG00000021862	snrpb	69	94.643	ENSPEMG00000007948	Snrpb	78	92.265	Peromyscus_maniculatus_bairdii
ENSORLG00000021862	snrpb	69	94.012	ENSPCIG00000004694	SNRPB	75	91.713	Phascolarctos_cinereus
ENSORLG00000021862	snrpb	62	100.000	ENSPFOG00000011802	snrpb	85	83.085	Poecilia_formosa
ENSORLG00000021862	snrpb	89	81.364	ENSPLAG00000014130	snrpb	59	100.000	Poecilia_latipinna
ENSORLG00000021862	snrpb	56	100.000	ENSPREG00000015515	snrpb	63	99.265	Poecilia_reticulata
ENSORLG00000021862	snrpb	69	94.643	ENSPPYG00000010841	SNRPB	78	92.265	Pongo_abelii
ENSORLG00000021862	snrpb	69	94.643	ENSPCOG00000013686	SNRPB	78	92.265	Propithecus_coquereli
ENSORLG00000021862	snrpb	69	93.452	ENSPVAG00000017013	SNRPB	63	91.160	Pteropus_vampyrus
ENSORLG00000021862	snrpb	100	99.167	ENSPNYG00000014788	snrpb	100	99.167	Pundamilia_nyererei
ENSORLG00000021862	snrpb	69	98.795	ENSPNAG00000016126	snrpb	75	97.207	Pygocentrus_nattereri
ENSORLG00000021862	snrpb	69	94.643	ENSRNOG00000006961	Snrpb	73	98.077	Rattus_norvegicus
ENSORLG00000021862	snrpb	69	94.643	ENSRBIG00000040505	SNRPB	78	92.778	Rhinopithecus_bieti
ENSORLG00000021862	snrpb	69	94.643	ENSRROG00000036094	SNRPB	78	92.265	Rhinopithecus_roxellana
ENSORLG00000021862	snrpb	69	94.643	ENSSBOG00000027310	SNRPB	78	92.265	Saimiri_boliviensis_boliviensis
ENSORLG00000021862	snrpb	69	95.238	ENSSHAG00000010394	SNRPB	75	92.818	Sarcophilus_harrisii
ENSORLG00000021862	snrpb	69	97.590	ENSSFOG00015002870	snrpb	76	96.089	Scleropages_formosus
ENSORLG00000021862	snrpb	100	97.917	ENSSMAG00000006766	snrpb	100	97.917	Scophthalmus_maximus
ENSORLG00000021862	snrpb	100	99.167	ENSSDUG00000018539	snrpb	100	99.167	Seriola_dumerili
ENSORLG00000021862	snrpb	100	99.167	ENSSLDG00000022391	snrpb	100	99.167	Seriola_lalandi_dorsalis
ENSORLG00000021862	snrpb	69	79.042	ENSSARG00000003084	SNRPB	77	77.901	Sorex_araneus
ENSORLG00000021862	snrpb	69	96.407	ENSSPUG00000015659	SNRPB	76	93.370	Sphenodon_punctatus
ENSORLG00000021862	snrpb	100	99.167	ENSSPAG00000021992	snrpb	100	99.167	Stegastes_partitus
ENSORLG00000021862	snrpb	69	94.643	ENSSSCG00000040857	-	78	92.265	Sus_scrofa
ENSORLG00000021862	snrpb	69	73.214	ENSSSCG00000011966	-	76	69.061	Sus_scrofa
ENSORLG00000021862	snrpb	70	83.529	ENSTGUG00000005684	SNRPB	59	97.143	Taeniopygia_guttata
ENSORLG00000021862	snrpb	95	97.807	ENSTRUG00000023094	snrpb	99	97.807	Takifugu_rubripes
ENSORLG00000021862	snrpb	100	97.917	ENSTNIG00000002991	snrpb	100	97.917	Tetraodon_nigroviridis
ENSORLG00000021862	snrpb	69	94.643	ENSUAMG00000005984	-	87	92.308	Ursus_americanus
ENSORLG00000021862	snrpb	79	76.190	ENSUMAG00000002123	-	63	94.891	Ursus_maritimus
ENSORLG00000021862	snrpb	69	94.048	ENSVVUG00000025654	-	75	91.713	Vulpes_vulpes
ENSORLG00000021862	snrpb	93	74.236	ENSVVUG00000010086	-	78	74.033	Vulpes_vulpes
ENSORLG00000021862	snrpb	63	98.000	ENSXETG00000027266	snrpb	76	92.265	Xenopus_tropicalis
ENSORLG00000021862	snrpb	60	95.139	ENSXMAG00000028767	snrpb	58	100.000	Xiphophorus_maculatus