EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000022335 (Gene tree)
Gene ID: 101162224
Gene Symbol: rab42a
Alias: -
Full Name: ras-related protein Rab-39B
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 6857 bases
Position: chr11:18214569-18221425
Accession: 101162224
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000030329	MMR_HSR1	PF01926.23	7.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000031486	-	5115	XM_004074295	ENSORLP00000030329	218 (aa)	XP_004074343	UPI0002A4828C

Gene Model

Click here to download ENSORLG00000022335's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000022335's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000022335	rab42a	75	37.126	ENSORLG00000006405	rab9b	79	37.126
ENSORLG00000022335	rab42a	97	39.623	ENSORLG00000012158	rab25a	95	39.623
ENSORLG00000022335	rab42a	74	34.940	ENSORLG00000001351	-	79	34.940
ENSORLG00000022335	rab42a	77	32.738	ENSORLG00000003681	rheb	89	32.738
ENSORLG00000022335	rab42a	85	41.935	ENSORLG00000013938	rab11bb	84	41.935
ENSORLG00000022335	rab42a	67	36.735	ENSORLG00000010115	rab23	73	36.184
ENSORLG00000022335	rab42a	98	57.277	ENSORLG00000014099	si:dkey-34d22.5	97	57.277
ENSORLG00000022335	rab42a	92	39.500	ENSORLG00000018331	RAB11A	92	40.201
ENSORLG00000022335	rab42a	72	39.490	ENSORLG00000026197	rab6a	75	39.490
ENSORLG00000022335	rab42a	80	41.714	ENSORLG00000016555	rab3db	97	37.788
ENSORLG00000022335	rab42a	74	42.331	ENSORLG00000024558	-	67	43.396
ENSORLG00000022335	rab42a	67	46.622	ENSORLG00000030109	rab33ba	63	46.622
ENSORLG00000022335	rab42a	74	34.940	ENSORLG00000029090	-	80	34.940
ENSORLG00000022335	rab42a	79	44.186	ENSORLG00000000602	zgc:171927	80	44.186
ENSORLG00000022335	rab42a	89	40.206	ENSORLG00000029812	rab30	95	40.206
ENSORLG00000022335	rab42a	82	42.697	ENSORLG00000028104	rab1ab	87	42.697
ENSORLG00000022335	rab42a	75	40.120	ENSORLG00000006628	-	79	40.120
ENSORLG00000022335	rab42a	69	35.099	ENSORLG00000024443	zgc:55558	87	34.146
ENSORLG00000022335	rab42a	69	35.526	ENSORLG00000018119	si:ch73-116o1.2	78	34.940
ENSORLG00000022335	rab42a	76	39.394	ENSORLG00000004624	rab18a	80	39.394
ENSORLG00000022335	rab42a	67	44.079	ENSORLG00000002071	-	62	44.079
ENSORLG00000022335	rab42a	77	32.934	ENSORLG00000001566	rhebl1	88	32.934
ENSORLG00000022335	rab42a	82	41.341	ENSORLG00000016135	rab25b	86	42.353
ENSORLG00000022335	rab42a	75	37.195	ENSORLG00000003882	rab5c	74	37.195
ENSORLG00000022335	rab42a	69	34.437	ENSORLG00000018912	hrasb	85	33.537
ENSORLG00000022335	rab42a	79	34.483	ENSORLG00000003119	rab34b	63	34.483
ENSORLG00000022335	rab42a	73	32.298	ENSORLG00000009874	rabl2	69	32.298
ENSORLG00000022335	rab42a	72	42.236	ENSORLG00000025098	si:dkey-13a21.4	78	41.975
ENSORLG00000022335	rab42a	79	40.462	ENSORLG00000009609	rab18b	83	40.462
ENSORLG00000022335	rab42a	98	38.785	ENSORLG00000007406	rab14	97	38.785
ENSORLG00000022335	rab42a	98	38.318	ENSORLG00000029921	-	97	38.318
ENSORLG00000022335	rab42a	80	41.714	ENSORLG00000001098	si:dkey-16l2.16	82	41.714
ENSORLG00000022335	rab42a	86	47.872	ENSORLG00000013432	rab2a	88	47.872
ENSORLG00000022335	rab42a	74	33.742	ENSORLG00000024102	kras	98	30.890
ENSORLG00000022335	rab42a	100	53.670	ENSORLG00000008345	-	100	53.670
ENSORLG00000022335	rab42a	85	42.473	ENSORLG00000015307	rab11ba	84	42.473
ENSORLG00000022335	rab42a	100	55.046	ENSORLG00000001850	RAB39B	100	55.046
ENSORLG00000022335	rab42a	84	42.623	ENSORLG00000016126	rab11al	84	42.623
ENSORLG00000022335	rab42a	70	40.909	ENSORLG00000030642	zgc:101559	66	40.909
ENSORLG00000022335	rab42a	67	41.216	ENSORLG00000030566	rab33a	53	41.216
ENSORLG00000022335	rab42a	75	38.323	ENSORLG00000017806	rab9a	82	38.323
ENSORLG00000022335	rab42a	79	42.775	ENSORLG00000025395	-	86	42.775
ENSORLG00000022335	rab42a	85	41.935	ENSORLG00000015284	-	61	41.935
ENSORLG00000022335	rab42a	78	35.260	ENSORLG00000027892	RAB29	84	35.260
ENSORLG00000022335	rab42a	85	41.270	ENSORLG00000003902	rab12	76	39.785
ENSORLG00000022335	rab42a	77	37.500	ENSORLG00000024116	RAB15	80	37.500
ENSORLG00000022335	rab42a	74	37.267	ENSORLG00000016290	rab6bb	81	37.267
ENSORLG00000022335	rab42a	84	32.000	ENSORLG00000026940	rasl11a	76	32.000
ENSORLG00000022335	rab42a	75	43.902	ENSORLG00000028885	rab35b	80	43.902
ENSORLG00000022335	rab42a	79	34.483	ENSORLG00000004394	rab34a	65	34.483
ENSORLG00000022335	rab42a	73	44.025	ENSORLG00000010846	rab15	74	44.025
ENSORLG00000022335	rab42a	82	42.697	ENSORLG00000021846	-	87	42.697
ENSORLG00000022335	rab42a	72	36.810	ENSORLG00000000937	-	75	36.810
ENSORLG00000022335	rab42a	75	35.366	ENSORLG00000012261	rab5aa	75	35.366
ENSORLG00000022335	rab42a	72	39.490	ENSORLG00000027669	RAB41	73	39.490
ENSORLG00000022335	rab42a	80	31.818	ENSORLG00000025819	-	93	31.818
ENSORLG00000022335	rab42a	72	32.484	ENSORLG00000025519	rras	86	31.765

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000022335	rab42a	100	95.872	ENSAPOG00000009188	rab42a	100	95.872	Acanthochromis_polyacanthus
ENSORLG00000022335	rab42a	100	96.330	ENSACIG00000003102	rab42a	100	96.330	Amphilophus_citrinellus
ENSORLG00000022335	rab42a	100	95.413	ENSAOCG00000012921	rab42a	83	95.413	Amphiprion_ocellaris
ENSORLG00000022335	rab42a	100	95.413	ENSAPEG00000007713	rab42a	83	95.413	Amphiprion_percula
ENSORLG00000022335	rab42a	100	93.119	ENSATEG00000009052	rab42a	100	93.119	Anabas_testudineus
ENSORLG00000022335	rab42a	100	95.413	ENSACLG00000007514	rab42a	100	95.413	Astatotilapia_calliptera
ENSORLG00000022335	rab42a	100	90.826	ENSAMXG00000032729	rab42a	100	90.826	Astyanax_mexicanus
ENSORLG00000022335	rab42a	100	93.119	ENSCSEG00000010582	rab42a	100	93.119	Cynoglossus_semilaevis
ENSORLG00000022335	rab42a	100	91.284	ENSDARG00000034215	rab42a	100	91.284	Danio_rerio
ENSORLG00000022335	rab42a	100	47.032	ENSDARG00000102580	CU571310.1	99	47.032	Danio_rerio
ENSORLG00000022335	rab42a	100	89.450	ENSELUG00000010345	rab42a	100	89.450	Esox_lucius
ENSORLG00000022335	rab42a	100	96.330	ENSFHEG00000013106	rab42a	100	96.330	Fundulus_heteroclitus
ENSORLG00000022335	rab42a	100	95.413	ENSGAFG00000002141	rab42a	100	95.413	Gambusia_affinis
ENSORLG00000022335	rab42a	100	95.413	ENSHBUG00000015126	rab42a	82	95.413	Haplochromis_burtoni
ENSORLG00000022335	rab42a	100	88.073	ENSIPUG00000011376	rab42a	100	88.073	Ictalurus_punctatus
ENSORLG00000022335	rab42a	100	95.413	ENSKMAG00000007267	rab42a	100	95.413	Kryptolebias_marmoratus
ENSORLG00000022335	rab42a	100	95.872	ENSLBEG00000001193	rab42a	100	95.872	Labrus_bergylta
ENSORLG00000022335	rab42a	100	64.220	ENSLACG00000012755	-	100	64.220	Latimeria_chalumnae
ENSORLG00000022335	rab42a	100	82.110	ENSLOCG00000003453	rab42a	100	82.110	Lepisosteus_oculatus
ENSORLG00000022335	rab42a	100	50.685	ENSLOCG00000015825	-	99	50.685	Lepisosteus_oculatus
ENSORLG00000022335	rab42a	100	97.248	ENSMAMG00000002296	rab42a	100	97.248	Mastacembelus_armatus
ENSORLG00000022335	rab42a	100	95.413	ENSMZEG00005012460	rab42a	82	95.413	Maylandia_zebra
ENSORLG00000022335	rab42a	100	93.578	ENSMMOG00000014358	rab42a	100	93.578	Mola_mola
ENSORLG00000022335	rab42a	100	95.872	ENSNBRG00000021487	rab42a	82	95.872	Neolamprologus_brichardi
ENSORLG00000022335	rab42a	100	100.000	ENSORLG00020013895	rab42a	100	100.000	Oryzias_latipes_hni
ENSORLG00000022335	rab42a	100	100.000	ENSORLG00015004273	rab42a	100	100.000	Oryzias_latipes_hsok
ENSORLG00000022335	rab42a	100	100.000	ENSOMEG00000020418	rab42a	100	100.000	Oryzias_melastigma
ENSORLG00000022335	rab42a	100	78.082	ENSPKIG00000021215	-	100	78.082	Paramormyrops_kingsleyae
ENSORLG00000022335	rab42a	89	50.000	ENSPKIG00000015234	-	93	50.000	Paramormyrops_kingsleyae
ENSORLG00000022335	rab42a	90	95.939	ENSPMGG00000024112	rab42a	90	95.939	Periophthalmus_magnuspinnatus
ENSORLG00000022335	rab42a	100	94.495	ENSPFOG00000004838	rab42a	82	94.495	Poecilia_formosa
ENSORLG00000022335	rab42a	100	94.954	ENSPLAG00000005628	rab42a	100	94.954	Poecilia_latipinna
ENSORLG00000022335	rab42a	100	94.495	ENSPMEG00000019497	rab42a	100	94.495	Poecilia_mexicana
ENSORLG00000022335	rab42a	100	95.413	ENSPREG00000013962	rab42a	100	95.413	Poecilia_reticulata
ENSORLG00000022335	rab42a	100	95.413	ENSPNYG00000010325	rab42a	82	95.413	Pundamilia_nyererei
ENSORLG00000022335	rab42a	100	90.826	ENSPNAG00000016567	rab42a	100	90.826	Pygocentrus_nattereri
ENSORLG00000022335	rab42a	100	46.119	ENSSFOG00015016000	-	97	46.119	Scleropages_formosus
ENSORLG00000022335	rab42a	100	84.862	ENSSFOG00015020732	rab42a	100	84.862	Scleropages_formosus
ENSORLG00000022335	rab42a	100	94.495	ENSSMAG00000020311	rab42a	100	94.495	Scophthalmus_maximus
ENSORLG00000022335	rab42a	100	96.789	ENSSDUG00000011851	rab42a	100	96.789	Seriola_dumerili
ENSORLG00000022335	rab42a	100	96.789	ENSSLDG00000020354	rab42a	100	96.789	Seriola_lalandi_dorsalis
ENSORLG00000022335	rab42a	100	97.248	ENSSPAG00000016167	rab42a	100	97.248	Stegastes_partitus
ENSORLG00000022335	rab42a	100	95.413	ENSTRUG00000010224	rab42a	100	95.413	Takifugu_rubripes
ENSORLG00000022335	rab42a	100	95.872	ENSXCOG00000003428	rab42a	100	95.872	Xiphophorus_couchianus
ENSORLG00000022335	rab42a	100	95.872	ENSXMAG00000028376	rab42a	100	95.872	Xiphophorus_maculatus