EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000022412 (Gene tree)
Gene ID: 101166434
Gene Symbol: polr3f
Alias: -
Full Name: RNA polymerase III subunit F
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 4781 bases
Position: chr1:412560-417340
Accession: 101166434
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000034870	RNA_pol_Rpc34	PF05158.12	1e-97	1	1
ENSORLP00000023238	RNA_pol_Rpc34	PF05158.12	3.6e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000026944	-	2946	XM_023953573	ENSORLP00000034870	316 (aa)	XP_023809341	UPI0009DA7439
ENSORLT00000023239	-	408	-	ENSORLP00000023238	135 (aa)	-	H2MWJ0

Gene Model

Click here to download ENSORLG00000022412's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03020	RNA polymerase	KEGG
ola04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000022412's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000022412	polr3f	100	85.127	ENSG00000132664	POLR3F	100	85.127	Homo_sapiens
ENSORLG00000022412	polr3f	100	93.038	ENSAPOG00000008271	polr3f	100	93.038	Acanthochromis_polyacanthus
ENSORLG00000022412	polr3f	100	84.810	ENSAMEG00000005222	POLR3F	100	84.810	Ailuropoda_melanoleuca
ENSORLG00000022412	polr3f	100	85.443	ENSACIG00000006705	polr3f	100	85.443	Amphilophus_citrinellus
ENSORLG00000022412	polr3f	100	93.038	ENSAOCG00000000687	polr3f	100	93.038	Amphiprion_ocellaris
ENSORLG00000022412	polr3f	100	92.722	ENSAPEG00000015263	polr3f	100	92.722	Amphiprion_percula
ENSORLG00000022412	polr3f	87	94.182	ENSATEG00000015539	polr3f	100	94.182	Anabas_testudineus
ENSORLG00000022412	polr3f	87	88.364	ENSAPLG00000005533	POLR3F	100	88.364	Anas_platyrhynchos
ENSORLG00000022412	polr3f	97	84.416	ENSACAG00000014293	POLR3F	99	84.416	Anolis_carolinensis
ENSORLG00000022412	polr3f	100	85.443	ENSANAG00000026726	POLR3F	100	85.443	Aotus_nancymaae
ENSORLG00000022412	polr3f	100	92.722	ENSACLG00000003615	polr3f	100	92.722	Astatotilapia_calliptera
ENSORLG00000022412	polr3f	100	87.658	ENSAMXG00000036020	polr3f	100	87.658	Astyanax_mexicanus
ENSORLG00000022412	polr3f	100	84.494	ENSBTAG00000008825	POLR3F	100	84.494	Bos_taurus
ENSORLG00000022412	polr3f	96	33.553	WBGene00021112	W09C3.4	97	33.553	Caenorhabditis_elegans
ENSORLG00000022412	polr3f	100	85.443	ENSCJAG00000005159	POLR3F	100	85.443	Callithrix_jacchus
ENSORLG00000022412	polr3f	100	85.127	ENSCAFG00000005420	POLR3F	100	85.127	Canis_familiaris
ENSORLG00000022412	polr3f	100	85.127	ENSCAFG00020027500	POLR3F	100	85.127	Canis_lupus_dingo
ENSORLG00000022412	polr3f	100	84.494	ENSCHIG00000014743	POLR3F	100	84.494	Capra_hircus
ENSORLG00000022412	polr3f	100	84.494	ENSTSYG00000004207	POLR3F	100	84.494	Carlito_syrichta
ENSORLG00000022412	polr3f	93	46.959	ENSCAPG00000008423	POLR3F	100	70.779	Cavia_aperea
ENSORLG00000022412	polr3f	100	85.127	ENSCPOG00000002400	POLR3F	100	85.127	Cavia_porcellus
ENSORLG00000022412	polr3f	100	76.266	ENSCCAG00000021800	POLR3F	100	76.266	Cebus_capucinus
ENSORLG00000022412	polr3f	100	84.810	ENSCATG00000019507	POLR3F	100	84.810	Cercocebus_atys
ENSORLG00000022412	polr3f	100	85.127	ENSCLAG00000016296	POLR3F	100	85.127	Chinchilla_lanigera
ENSORLG00000022412	polr3f	100	84.810	ENSCSAG00000011513	POLR3F	100	84.810	Chlorocebus_sabaeus
ENSORLG00000022412	polr3f	90	68.595	ENSCHOG00000013268	POLR3F	73	85.393	Choloepus_hoffmanni
ENSORLG00000022412	polr3f	87	86.182	ENSCPBG00000023473	POLR3F	100	86.182	Chrysemys_picta_bellii
ENSORLG00000022412	polr3f	99	58.861	ENSCING00000001212	-	99	58.861	Ciona_intestinalis
ENSORLG00000022412	polr3f	71	59.111	ENSCSAVG00000003340	-	96	62.130	Ciona_savignyi
ENSORLG00000022412	polr3f	92	83.849	ENSCANG00000037390	POLR3F	100	83.849	Colobus_angolensis_palliatus
ENSORLG00000022412	polr3f	100	84.494	ENSCGRG00001002032	Polr3f	100	84.494	Cricetulus_griseus_chok1gshd
ENSORLG00000022412	polr3f	100	84.494	ENSCGRG00000010852	Polr3f	100	84.494	Cricetulus_griseus_crigri
ENSORLG00000022412	polr3f	100	89.557	ENSCSEG00000001247	polr3f	100	89.557	Cynoglossus_semilaevis
ENSORLG00000022412	polr3f	100	93.354	ENSCVAG00000007611	polr3f	100	93.354	Cyprinodon_variegatus
ENSORLG00000022412	polr3f	100	87.342	ENSDARG00000012572	polr3f	100	87.342	Danio_rerio
ENSORLG00000022412	polr3f	100	82.278	ENSDNOG00000010719	POLR3F	100	82.278	Dasypus_novemcinctus
ENSORLG00000022412	polr3f	100	85.127	ENSDORG00000016352	Polr3f	100	85.127	Dipodomys_ordii
ENSORLG00000022412	polr3f	95	51.000	FBgn0038951	CG5380	99	51.000	Drosophila_melanogaster
ENSORLG00000022412	polr3f	88	50.538	ENSETEG00000015485	-	99	50.538	Echinops_telfairi
ENSORLG00000022412	polr3f	100	76.582	ENSEBUG00000006783	polr3f	100	76.582	Eptatretus_burgeri
ENSORLG00000022412	polr3f	100	85.127	ENSEASG00005002022	POLR3F	100	85.127	Equus_asinus_asinus
ENSORLG00000022412	polr3f	100	85.127	ENSECAG00000009920	POLR3F	100	85.127	Equus_caballus
ENSORLG00000022412	polr3f	80	88.000	ENSEEUG00000000184	POLR3F	80	88.000	Erinaceus_europaeus
ENSORLG00000022412	polr3f	100	87.658	ENSELUG00000001558	polr3f	100	87.658	Esox_lucius
ENSORLG00000022412	polr3f	100	84.810	ENSFCAG00000013828	POLR3F	100	84.810	Felis_catus
ENSORLG00000022412	polr3f	87	88.727	ENSFALG00000007623	POLR3F	100	88.727	Ficedula_albicollis
ENSORLG00000022412	polr3f	100	84.494	ENSFDAG00000002528	POLR3F	100	84.494	Fukomys_damarensis
ENSORLG00000022412	polr3f	100	91.772	ENSFHEG00000006450	polr3f	100	91.772	Fundulus_heteroclitus
ENSORLG00000022412	polr3f	100	85.443	ENSGALG00000008749	POLR3F	100	85.443	Gallus_gallus
ENSORLG00000022412	polr3f	100	92.405	ENSGAFG00000003698	polr3f	100	92.405	Gambusia_affinis
ENSORLG00000022412	polr3f	100	84.177	ENSGAGG00000006151	POLR3F	100	84.177	Gopherus_agassizii
ENSORLG00000022412	polr3f	100	85.127	ENSGGOG00000011543	POLR3F	100	85.127	Gorilla_gorilla
ENSORLG00000022412	polr3f	100	92.722	ENSHBUG00000013806	polr3f	100	92.722	Haplochromis_burtoni
ENSORLG00000022412	polr3f	100	84.177	ENSHGLG00000011867	POLR3F	100	84.177	Heterocephalus_glaber_female
ENSORLG00000022412	polr3f	100	84.177	ENSHGLG00100012577	POLR3F	100	84.177	Heterocephalus_glaber_male
ENSORLG00000022412	polr3f	100	83.544	ENSHCOG00000011751	polr3f	100	83.544	Hippocampus_comes
ENSORLG00000022412	polr3f	100	87.658	ENSIPUG00000013347	polr3f	100	87.658	Ictalurus_punctatus
ENSORLG00000022412	polr3f	100	84.810	ENSSTOG00000013588	POLR3F	100	84.810	Ictidomys_tridecemlineatus
ENSORLG00000022412	polr3f	100	85.443	ENSJJAG00000017513	Polr3f	100	85.443	Jaculus_jaculus
ENSORLG00000022412	polr3f	87	86.909	ENSKMAG00000016495	polr3f	100	86.182	Kryptolebias_marmoratus
ENSORLG00000022412	polr3f	73	92.672	ENSLBEG00000011998	polr3f	100	92.672	Labrus_bergylta
ENSORLG00000022412	polr3f	100	84.177	ENSLACG00000009371	POLR3F	100	84.177	Latimeria_chalumnae
ENSORLG00000022412	polr3f	100	87.975	ENSLOCG00000015701	polr3f	100	87.975	Lepisosteus_oculatus
ENSORLG00000022412	polr3f	100	84.177	ENSLAFG00000004929	POLR3F	100	84.177	Loxodonta_africana
ENSORLG00000022412	polr3f	100	84.810	ENSMFAG00000002227	POLR3F	100	84.810	Macaca_fascicularis
ENSORLG00000022412	polr3f	87	87.636	ENSMMUG00000004143	POLR3F	100	87.636	Macaca_mulatta
ENSORLG00000022412	polr3f	100	84.810	ENSMNEG00000033404	POLR3F	100	84.810	Macaca_nemestrina
ENSORLG00000022412	polr3f	100	84.810	ENSMLEG00000021905	POLR3F	100	84.810	Mandrillus_leucophaeus
ENSORLG00000022412	polr3f	100	91.139	ENSMAMG00000017975	polr3f	100	91.139	Mastacembelus_armatus
ENSORLG00000022412	polr3f	100	92.405	ENSMZEG00005015134	polr3f	100	92.405	Maylandia_zebra
ENSORLG00000022412	polr3f	100	86.076	ENSMGAG00000006691	POLR3F	100	86.076	Meleagris_gallopavo
ENSORLG00000022412	polr3f	100	84.810	ENSMAUG00000020176	Polr3f	100	84.810	Mesocricetus_auratus
ENSORLG00000022412	polr3f	100	84.810	ENSMICG00000044519	POLR3F	100	84.810	Microcebus_murinus
ENSORLG00000022412	polr3f	100	85.127	ENSMOCG00000018352	Polr3f	100	85.127	Microtus_ochrogaster
ENSORLG00000022412	polr3f	93	92.593	ENSMMOG00000018477	polr3f	100	92.593	Mola_mola
ENSORLG00000022412	polr3f	100	83.861	ENSMODG00000005624	POLR3F	100	83.861	Monodelphis_domestica
ENSORLG00000022412	polr3f	100	92.089	ENSMALG00000006685	polr3f	100	92.089	Monopterus_albus
ENSORLG00000022412	polr3f	100	84.494	MGP_CAROLIEiJ_G0024385	Polr3f	100	84.494	Mus_caroli
ENSORLG00000022412	polr3f	100	84.494	ENSMUSG00000027427	Polr3f	100	84.494	Mus_musculus
ENSORLG00000022412	polr3f	100	84.494	MGP_PahariEiJ_G0025829	Polr3f	100	84.494	Mus_pahari
ENSORLG00000022412	polr3f	100	84.494	MGP_SPRETEiJ_G0025304	Polr3f	100	84.494	Mus_spretus
ENSORLG00000022412	polr3f	100	64.923	ENSMPUG00000001252	-	100	64.923	Mustela_putorius_furo
ENSORLG00000022412	polr3f	100	84.810	ENSMLUG00000014844	POLR3F	100	84.810	Myotis_lucifugus
ENSORLG00000022412	polr3f	100	84.494	ENSNGAG00000010898	Polr3f	100	84.494	Nannospalax_galili
ENSORLG00000022412	polr3f	100	92.405	ENSNBRG00000020796	polr3f	100	92.405	Neolamprologus_brichardi
ENSORLG00000022412	polr3f	100	85.127	ENSNLEG00000009778	POLR3F	100	85.127	Nomascus_leucogenys
ENSORLG00000022412	polr3f	93	80.000	ENSMEUG00000010320	POLR3F	100	80.000	Notamacropus_eugenii
ENSORLG00000022412	polr3f	100	84.810	ENSOPRG00000003385	POLR3F	100	84.810	Ochotona_princeps
ENSORLG00000022412	polr3f	100	85.443	ENSODEG00000011521	POLR3F	100	85.443	Octodon_degus
ENSORLG00000022412	polr3f	100	92.405	ENSONIG00000006858	polr3f	100	92.405	Oreochromis_niloticus
ENSORLG00000022412	polr3f	100	84.177	ENSOANG00000001253	POLR3F	100	84.177	Ornithorhynchus_anatinus
ENSORLG00000022412	polr3f	100	85.127	ENSOCUG00000015067	POLR3F	100	85.127	Oryctolagus_cuniculus
ENSORLG00000022412	polr3f	100	100.000	ENSORLG00020021944	polr3f	100	100.000	Oryzias_latipes_hni
ENSORLG00000022412	polr3f	87	80.508	ENSOMEG00000008655	polr3f	75	80.508	Oryzias_melastigma
ENSORLG00000022412	polr3f	100	84.177	ENSOGAG00000002916	POLR3F	100	84.177	Otolemur_garnettii
ENSORLG00000022412	polr3f	100	50.949	ENSOARG00000008647	-	100	49.684	Ovis_aries
ENSORLG00000022412	polr3f	100	84.494	ENSOARG00000000315	-	100	84.494	Ovis_aries
ENSORLG00000022412	polr3f	100	85.127	ENSPPAG00000036681	POLR3F	100	85.127	Pan_paniscus
ENSORLG00000022412	polr3f	100	84.810	ENSPPRG00000024604	POLR3F	100	84.810	Panthera_pardus
ENSORLG00000022412	polr3f	100	84.810	ENSPTIG00000020292	POLR3F	100	84.810	Panthera_tigris_altaica
ENSORLG00000022412	polr3f	100	85.127	ENSPTRG00000013287	POLR3F	100	85.127	Pan_troglodytes
ENSORLG00000022412	polr3f	100	84.810	ENSPANG00000025015	POLR3F	100	84.810	Papio_anubis
ENSORLG00000022412	polr3f	100	86.709	ENSPKIG00000004427	polr3f	100	86.709	Paramormyrops_kingsleyae
ENSORLG00000022412	polr3f	87	87.636	ENSPSIG00000016613	POLR3F	100	87.636	Pelodiscus_sinensis
ENSORLG00000022412	polr3f	100	58.861	ENSPMGG00000018350	polr3f	100	61.076	Periophthalmus_magnuspinnatus
ENSORLG00000022412	polr3f	100	85.127	ENSPEMG00000006966	Polr3f	100	85.127	Peromyscus_maniculatus_bairdii
ENSORLG00000022412	polr3f	100	76.582	ENSPMAG00000005530	polr3f	100	76.582	Petromyzon_marinus
ENSORLG00000022412	polr3f	100	83.861	ENSPCIG00000000908	POLR3F	85	83.861	Phascolarctos_cinereus
ENSORLG00000022412	polr3f	100	93.038	ENSPFOG00000018334	polr3f	100	93.038	Poecilia_formosa
ENSORLG00000022412	polr3f	100	93.038	ENSPLAG00000021803	polr3f	100	93.038	Poecilia_latipinna
ENSORLG00000022412	polr3f	100	93.038	ENSPMEG00000013150	polr3f	100	93.038	Poecilia_mexicana
ENSORLG00000022412	polr3f	100	93.038	ENSPREG00000005278	polr3f	100	93.038	Poecilia_reticulata
ENSORLG00000022412	polr3f	100	85.127	ENSPPYG00000010737	POLR3F	100	85.127	Pongo_abelii
ENSORLG00000022412	polr3f	66	85.135	ENSPCAG00000004893	POLR3F	70	85.135	Procavia_capensis
ENSORLG00000022412	polr3f	100	84.810	ENSPCOG00000004543	POLR3F	100	84.810	Propithecus_coquereli
ENSORLG00000022412	polr3f	81	72.727	ENSPCOG00000015427	-	96	68.595	Propithecus_coquereli
ENSORLG00000022412	polr3f	100	84.494	ENSPVAG00000000403	POLR3F	100	84.494	Pteropus_vampyrus
ENSORLG00000022412	polr3f	100	92.722	ENSPNYG00000016276	polr3f	100	92.722	Pundamilia_nyererei
ENSORLG00000022412	polr3f	100	88.291	ENSPNAG00000005164	polr3f	100	88.291	Pygocentrus_nattereri
ENSORLG00000022412	polr3f	100	84.810	ENSRNOG00000007548	Polr3f	85	84.810	Rattus_norvegicus
ENSORLG00000022412	polr3f	100	84.810	ENSRBIG00000021268	POLR3F	100	84.810	Rhinopithecus_bieti
ENSORLG00000022412	polr3f	100	84.810	ENSRROG00000039911	POLR3F	100	84.810	Rhinopithecus_roxellana
ENSORLG00000022412	polr3f	100	85.443	ENSSBOG00000018207	POLR3F	100	85.443	Saimiri_boliviensis_boliviensis
ENSORLG00000022412	polr3f	100	66.562	ENSSHAG00000018160	POLR3F	100	66.044	Sarcophilus_harrisii
ENSORLG00000022412	polr3f	100	86.709	ENSSFOG00015022433	polr3f	100	86.709	Scleropages_formosus
ENSORLG00000022412	polr3f	100	89.873	ENSSMAG00000021029	polr3f	100	89.873	Scophthalmus_maximus
ENSORLG00000022412	polr3f	100	82.911	ENSSDUG00000022435	polr3f	100	82.911	Seriola_dumerili
ENSORLG00000022412	polr3f	100	92.405	ENSSLDG00000012761	polr3f	100	92.405	Seriola_lalandi_dorsalis
ENSORLG00000022412	polr3f	100	75.949	ENSSARG00000006039	POLR3F	100	75.949	Sorex_araneus
ENSORLG00000022412	polr3f	100	84.494	ENSSPUG00000001873	POLR3F	100	84.494	Sphenodon_punctatus
ENSORLG00000022412	polr3f	100	84.177	ENSSPAG00000002092	polr3f	100	84.177	Stegastes_partitus
ENSORLG00000022412	polr3f	100	84.177	ENSSSCG00000007095	POLR3F	100	89.224	Sus_scrofa
ENSORLG00000022412	polr3f	100	85.759	ENSTGUG00000005839	POLR3F	100	85.759	Taeniopygia_guttata
ENSORLG00000022412	polr3f	100	90.506	ENSTRUG00000012101	polr3f	100	90.506	Takifugu_rubripes
ENSORLG00000022412	polr3f	75	80.198	ENSTNIG00000002288	-	92	80.198	Tetraodon_nigroviridis
ENSORLG00000022412	polr3f	100	89.873	ENSTNIG00000006456	polr3f	100	89.873	Tetraodon_nigroviridis
ENSORLG00000022412	polr3f	100	68.987	ENSTBEG00000007921	POLR3F	100	68.987	Tupaia_belangeri
ENSORLG00000022412	polr3f	100	84.494	ENSTTRG00000002580	POLR3F	100	84.494	Tursiops_truncatus
ENSORLG00000022412	polr3f	53	86.145	ENSUAMG00000024166	POLR3F	100	86.145	Ursus_americanus
ENSORLG00000022412	polr3f	61	69.880	ENSUAMG00000025586	-	100	69.880	Ursus_americanus
ENSORLG00000022412	polr3f	100	84.494	ENSUMAG00000024944	POLR3F	100	84.494	Ursus_maritimus
ENSORLG00000022412	polr3f	100	84.494	ENSVPAG00000009063	POLR3F	100	84.494	Vicugna_pacos
ENSORLG00000022412	polr3f	100	85.127	ENSVVUG00000012925	POLR3F	100	85.127	Vulpes_vulpes
ENSORLG00000022412	polr3f	100	84.177	ENSXETG00000024898	polr3f	100	84.177	Xenopus_tropicalis
ENSORLG00000022412	polr3f	87	93.455	ENSXCOG00000010301	polr3f	100	93.455	Xiphophorus_couchianus
ENSORLG00000022412	polr3f	100	92.722	ENSXMAG00000004604	polr3f	100	92.722	Xiphophorus_maculatus