EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000022739 (Gene tree)
Gene ID: 101158397
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 141429 bases
Position: chr21:14849012-14990440
Accession: 101158397
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000045330	KH_1	PF00013.29	1.1e-54	1	3
ENSORLP00000045330	KH_1	PF00013.29	1.1e-54	2	3
ENSORLP00000045330	KH_1	PF00013.29	1.1e-54	3	3
ENSORLP00000033840	KH_1	PF00013.29	1.2e-54	1	3
ENSORLP00000033840	KH_1	PF00013.29	1.2e-54	2	3
ENSORLP00000033840	KH_1	PF00013.29	1.2e-54	3	3
ENSORLP00000045330	KH_2	PF07650.17	1.7e-14	1	1
ENSORLP00000033840	KH_2	PF07650.17	2.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000033933	-	5236	XM_011489554	ENSORLP00000033840	327 (aa)	XP_011487856	UPI0005CC52F6
ENSORLT00000029707	-	5841	XM_023950558	ENSORLP00000045330	321 (aa)	XP_023806326	UPI0002A4BC3E

Gene Model

Click here to download ENSORLG00000022739's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000022739's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000022739	-	97	58.187	ENSORLG00000003061	pcbp4	71	56.818
ENSORLG00000022739	-	97	73.968	ENSORLG00000014385	-	72	74.121
ENSORLG00000022739	-	91	39.062	ENSORLG00000007103	fubp3	62	39.062
ENSORLG00000022739	-	97	97.097	ENSORLG00000000059	pcbp3	100	97.097
ENSORLG00000022739	-	78	52.055	ENSORLG00000004704	hnrpkl	55	52.857
ENSORLG00000022739	-	98	31.544	ENSORLG00000017565	-	63	31.544
ENSORLG00000022739	-	94	58.663	ENSORLG00000009899	-	73	58.663
ENSORLG00000022739	-	97	34.532	ENSORLG00000016532	igf2bp2b	67	34.066
ENSORLG00000022739	-	97	80.000	ENSORLG00000005176	PCBP2	97	80.000
ENSORLG00000022739	-	97	34.507	ENSORLG00000004712	igf2bp3	68	30.337
ENSORLG00000022739	-	69	38.961	ENSORLG00000003540	fubp1	58	39.394
ENSORLG00000022739	-	93	41.892	ENSORLG00000027761	-	61	39.437
ENSORLG00000022739	-	80	52.857	ENSORLG00000005161	hnrnpk	60	52.857
ENSORLG00000022739	-	99	76.852	ENSORLG00000012872	pcbp2	99	76.852
ENSORLG00000022739	-	94	31.690	ENSORLG00000025629	igf2bp1	60	30.822
ENSORLG00000022739	-	76	40.845	ENSORLG00000000350	nova1	52	40.845

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000022739	-	99	98.773	ENSAPOG00000016582	-	99	98.773	Acanthochromis_polyacanthus
ENSORLG00000022739	-	99	92.767	ENSAPOG00000020003	pcbp3	89	92.767	Acanthochromis_polyacanthus
ENSORLG00000022739	-	98	91.592	ENSAMEG00000001697	-	99	87.356	Ailuropoda_melanoleuca
ENSORLG00000022739	-	99	87.966	ENSACIG00000010933	pcbp3	99	87.966	Amphilophus_citrinellus
ENSORLG00000022739	-	100	94.512	ENSACIG00000002739	-	100	94.512	Amphilophus_citrinellus
ENSORLG00000022739	-	95	94.881	ENSAOCG00000007806	-	100	94.881	Amphiprion_ocellaris
ENSORLG00000022739	-	97	97.097	ENSAOCG00000008592	-	98	97.097	Amphiprion_ocellaris
ENSORLG00000022739	-	99	89.744	ENSAPEG00000008011	pcbp3	99	89.744	Amphiprion_percula
ENSORLG00000022739	-	100	97.508	ENSAPEG00000005209	-	100	97.508	Amphiprion_percula
ENSORLG00000022739	-	100	96.885	ENSATEG00000009833	-	100	96.885	Anabas_testudineus
ENSORLG00000022739	-	97	87.988	ENSATEG00000015787	-	100	87.988	Anabas_testudineus
ENSORLG00000022739	-	98	75.543	ENSAPLG00000008951	-	82	75.543	Anas_platyrhynchos
ENSORLG00000022739	-	98	92.988	ENSAPLG00000002975	-	98	92.988	Anas_platyrhynchos
ENSORLG00000022739	-	98	85.714	ENSACAG00000004607	-	99	85.714	Anolis_carolinensis
ENSORLG00000022739	-	99	83.090	ENSACAG00000009819	-	99	83.090	Anolis_carolinensis
ENSORLG00000022739	-	95	96.639	ENSANAG00000030702	-	100	96.639	Aotus_nancymaae
ENSORLG00000022739	-	100	98.754	ENSACLG00000003801	-	100	98.754	Astatotilapia_calliptera
ENSORLG00000022739	-	99	89.459	ENSACLG00000011835	pcbp3	99	89.459	Astatotilapia_calliptera
ENSORLG00000022739	-	99	91.404	ENSAMXG00000003440	pcbp3	99	91.404	Astyanax_mexicanus
ENSORLG00000022739	-	97	92.258	ENSAMXG00000013588	-	100	92.258	Astyanax_mexicanus
ENSORLG00000022739	-	95	68.182	ENSAMXG00000001760	zgc:110045	73	67.674	Astyanax_mexicanus
ENSORLG00000022739	-	90	97.380	ENSCAFG00020019472	-	81	97.380	Canis_lupus_dingo
ENSORLG00000022739	-	98	97.452	ENSCSAG00000007440	-	89	97.452	Chlorocebus_sabaeus
ENSORLG00000022739	-	97	83.183	ENSCPBG00000000733	-	77	80.516	Chrysemys_picta_bellii
ENSORLG00000022739	-	95	97.697	ENSCPBG00000012151	-	99	91.617	Chrysemys_picta_bellii
ENSORLG00000022739	-	100	78.674	ENSCSEG00000016984	-	100	78.674	Cynoglossus_semilaevis
ENSORLG00000022739	-	97	93.548	ENSCSEG00000000822	pcbp3	99	93.548	Cynoglossus_semilaevis
ENSORLG00000022739	-	99	89.459	ENSCVAG00000014482	pcbp3	99	89.459	Cyprinodon_variegatus
ENSORLG00000022739	-	100	98.754	ENSCVAG00000005262	-	100	98.754	Cyprinodon_variegatus
ENSORLG00000022739	-	100	92.151	ENSDARG00000054378	pcbp3	100	92.151	Danio_rerio
ENSORLG00000022739	-	98	83.439	ENSETEG00000015988	-	98	83.439	Echinops_telfairi
ENSORLG00000022739	-	93	69.721	ENSEBUG00000005495	pcbp3	75	69.721	Eptatretus_burgeri
ENSORLG00000022739	-	95	73.214	ENSEBUG00000016192	pcbp3	99	73.606	Eptatretus_burgeri
ENSORLG00000022739	-	98	81.703	ENSEBUG00000007485	-	92	82.192	Eptatretus_burgeri
ENSORLG00000022739	-	99	89.773	ENSELUG00000003521	pcbp3	99	89.773	Esox_lucius
ENSORLG00000022739	-	99	97.546	ENSELUG00000001560	-	90	97.546	Esox_lucius
ENSORLG00000022739	-	98	75.815	ENSFALG00000004411	-	77	75.815	Ficedula_albicollis
ENSORLG00000022739	-	98	96.497	ENSFALG00000003949	-	98	96.497	Ficedula_albicollis
ENSORLG00000022739	-	100	96.573	ENSFHEG00000006539	-	100	96.573	Fundulus_heteroclitus
ENSORLG00000022739	-	98	93.930	ENSFHEG00000016615	pcbp3	96	93.930	Fundulus_heteroclitus
ENSORLG00000022739	-	97	80.896	ENSGMOG00000011992	pcbp3	97	80.896	Gadus_morhua
ENSORLG00000022739	-	95	70.821	ENSGMOG00000008611	-	99	70.821	Gadus_morhua
ENSORLG00000022739	-	98	83.193	ENSGALG00000004394	-	98	89.674	Gallus_gallus
ENSORLG00000022739	-	97	82.738	ENSGALG00000013155	-	99	80.539	Gallus_gallus
ENSORLG00000022739	-	100	84.593	ENSGAFG00000011430	pcbp3	99	84.593	Gambusia_affinis
ENSORLG00000022739	-	99	98.466	ENSGAFG00000010274	-	99	98.466	Gambusia_affinis
ENSORLG00000022739	-	100	91.813	ENSGACG00000002266	-	100	91.813	Gasterosteus_aculeatus
ENSORLG00000022739	-	100	79.670	ENSGACG00000014955	-	100	79.670	Gasterosteus_aculeatus
ENSORLG00000022739	-	91	89.513	ENSGAGG00000000271	-	100	89.513	Gopherus_agassizii
ENSORLG00000022739	-	77	87.368	ENSGAGG00000006956	-	76	87.368	Gopherus_agassizii
ENSORLG00000022739	-	100	98.754	ENSHBUG00000021782	-	100	98.754	Haplochromis_burtoni
ENSORLG00000022739	-	97	93.871	ENSHBUG00000010697	pcbp3	98	93.871	Haplochromis_burtoni
ENSORLG00000022739	-	100	93.769	ENSHCOG00000006067	-	100	93.769	Hippocampus_comes
ENSORLG00000022739	-	99	89.714	ENSHCOG00000017868	pcbp3	99	89.714	Hippocampus_comes
ENSORLG00000022739	-	100	95.950	ENSIPUG00000006238	pcbp3	100	95.950	Ictalurus_punctatus
ENSORLG00000022739	-	99	97.546	ENSKMAG00000018530	-	99	97.546	Kryptolebias_marmoratus
ENSORLG00000022739	-	99	89.744	ENSKMAG00000003046	pcbp3	99	89.744	Kryptolebias_marmoratus
ENSORLG00000022739	-	100	82.515	ENSLBEG00000006542	-	100	82.515	Labrus_bergylta
ENSORLG00000022739	-	99	93.082	ENSLBEG00000006201	pcbp3	98	93.082	Labrus_bergylta
ENSORLG00000022739	-	97	77.465	ENSLACG00000010804	zgc:110045	78	75.202	Latimeria_chalumnae
ENSORLG00000022739	-	97	83.754	ENSLACG00000010386	pcbp3	78	81.351	Latimeria_chalumnae
ENSORLG00000022739	-	95	83.180	ENSLOCG00000005058	zgc:110045	80	83.486	Lepisosteus_oculatus
ENSORLG00000022739	-	98	92.216	ENSLOCG00000009369	pcbp3	99	92.216	Lepisosteus_oculatus
ENSORLG00000022739	-	98	93.610	ENSMAMG00000022336	pcbp3	94	93.610	Mastacembelus_armatus
ENSORLG00000022739	-	100	95.639	ENSMAMG00000011620	-	100	95.639	Mastacembelus_armatus
ENSORLG00000022739	-	99	88.427	ENSMZEG00005014882	-	99	89.021	Maylandia_zebra
ENSORLG00000022739	-	99	87.679	ENSMZEG00005008993	pcbp3	99	87.679	Maylandia_zebra
ENSORLG00000022739	-	94	81.449	ENSMGAG00000001883	-	96	81.268	Meleagris_gallopavo
ENSORLG00000022739	-	98	75.815	ENSMGAG00000006794	-	77	75.815	Meleagris_gallopavo
ENSORLG00000022739	-	100	95.950	ENSMMOG00000005216	-	100	95.950	Mola_mola
ENSORLG00000022739	-	97	93.269	ENSMMOG00000000730	pcbp3	88	93.269	Mola_mola
ENSORLG00000022739	-	71	77.570	ENSMODG00000027884	-	93	77.570	Monodelphis_domestica
ENSORLG00000022739	-	99	87.429	ENSMALG00000000691	pcbp3	99	87.429	Monopterus_albus
ENSORLG00000022739	-	100	84.457	ENSMPUG00000001779	-	92	84.457	Mustela_putorius_furo
ENSORLG00000022739	-	99	87.679	ENSNBRG00000016409	-	99	87.679	Neolamprologus_brichardi
ENSORLG00000022739	-	99	89.021	ENSNBRG00000016714	-	99	89.021	Neolamprologus_brichardi
ENSORLG00000022739	-	95	82.235	ENSOPRG00000003431	-	99	82.235	Ochotona_princeps
ENSORLG00000022739	-	100	98.754	ENSONIG00000004611	-	100	98.754	Oreochromis_niloticus
ENSORLG00000022739	-	97	84.703	ENSONIG00000012122	-	98	84.703	Oreochromis_niloticus
ENSORLG00000022739	-	98	96.497	ENSOCUG00000002696	-	89	96.497	Oryctolagus_cuniculus
ENSORLG00000022739	-	99	95.611	ENSORLG00020012671	pcbp3	99	95.611	Oryzias_latipes_hni
ENSORLG00000022739	-	100	99.694	ENSORLG00020006124	-	100	99.694	Oryzias_latipes_hni
ENSORLG00000022739	-	100	100.000	ENSORLG00015008051	-	100	100.000	Oryzias_latipes_hsok
ENSORLG00000022739	-	99	95.611	ENSORLG00015000429	pcbp3	99	95.611	Oryzias_latipes_hsok
ENSORLG00000022739	-	95	94.483	ENSOMEG00000020811	pcbp3	99	94.483	Oryzias_melastigma
ENSORLG00000022739	-	100	99.377	ENSOMEG00000020162	-	100	99.377	Oryzias_melastigma
ENSORLG00000022739	-	98	83.889	ENSOGAG00000008044	-	99	83.889	Otolemur_garnettii
ENSORLG00000022739	-	99	96.933	ENSPKIG00000019329	pcbp3	99	96.933	Paramormyrops_kingsleyae
ENSORLG00000022739	-	78	84.211	ENSPKIG00000020913	-	82	84.211	Paramormyrops_kingsleyae
ENSORLG00000022739	-	91	81.301	ENSPSIG00000008350	-	72	77.863	Pelodiscus_sinensis
ENSORLG00000022739	-	98	83.686	ENSPSIG00000014970	-	98	84.290	Pelodiscus_sinensis
ENSORLG00000022739	-	99	89.685	ENSPMGG00000022383	pcbp3	99	89.685	Periophthalmus_magnuspinnatus
ENSORLG00000022739	-	91	88.830	ENSPMAG00000004637	-	97	88.830	Petromyzon_marinus
ENSORLG00000022739	-	98	73.585	ENSPMAG00000004551	pcbp3	91	73.585	Petromyzon_marinus
ENSORLG00000022739	-	98	90.504	ENSPCIG00000028092	-	99	90.504	Phascolarctos_cinereus
ENSORLG00000022739	-	100	79.670	ENSPLAG00000011449	pcbp3	99	75.439	Poecilia_latipinna
ENSORLG00000022739	-	99	92.424	ENSPLAG00000004074	-	92	92.424	Poecilia_latipinna
ENSORLG00000022739	-	99	88.952	ENSPMEG00000021239	pcbp3	99	88.952	Poecilia_mexicana
ENSORLG00000022739	-	99	89.244	ENSPMEG00000006653	-	99	89.244	Poecilia_mexicana
ENSORLG00000022739	-	100	96.262	ENSPREG00000020585	-	100	96.262	Poecilia_reticulata
ENSORLG00000022739	-	97	92.308	ENSPREG00000015736	pcbp3	99	92.308	Poecilia_reticulata
ENSORLG00000022739	-	97	94.194	ENSPNYG00000012326	pcbp3	95	94.194	Pundamilia_nyererei
ENSORLG00000022739	-	100	96.262	ENSPNYG00000013205	-	100	96.262	Pundamilia_nyererei
ENSORLG00000022739	-	96	92.857	ENSPNAG00000008541	-	98	92.857	Pygocentrus_nattereri
ENSORLG00000022739	-	100	98.442	ENSPNAG00000015104	pcbp3	100	98.442	Pygocentrus_nattereri
ENSORLG00000022739	-	98	97.134	ENSRNOG00000001245	Pcbp3	98	97.134	Rattus_norvegicus
ENSORLG00000022739	-	100	85.586	ENSRBIG00000028177	-	92	85.586	Rhinopithecus_bieti
ENSORLG00000022739	-	98	91.018	ENSSHAG00000007890	-	99	91.018	Sarcophilus_harrisii
ENSORLG00000022739	-	99	97.546	ENSSFOG00015010205	pcbp3	99	97.546	Scleropages_formosus
ENSORLG00000022739	-	99	89.112	ENSSFOG00015014706	pcbp3	99	89.112	Scleropages_formosus
ENSORLG00000022739	-	94	85.430	ENSSFOG00015007118	-	93	85.430	Scleropages_formosus
ENSORLG00000022739	-	97	94.516	ENSSMAG00000011929	pcbp3	97	94.516	Scophthalmus_maximus
ENSORLG00000022739	-	100	98.442	ENSSMAG00000003135	-	100	98.442	Scophthalmus_maximus
ENSORLG00000022739	-	99	92.401	ENSSDUG00000008502	-	99	92.401	Seriola_dumerili
ENSORLG00000022739	-	97	87.164	ENSSDUG00000011608	pcbp3	99	87.164	Seriola_dumerili
ENSORLG00000022739	-	97	87.164	ENSSLDG00000008518	pcbp3	99	87.164	Seriola_lalandi_dorsalis
ENSORLG00000022739	-	99	98.773	ENSSLDG00000020161	-	99	98.773	Seriola_lalandi_dorsalis
ENSORLG00000022739	-	92	81.443	ENSSPUG00000013214	-	90	84.080	Sphenodon_punctatus
ENSORLG00000022739	-	95	95.222	ENSSPAG00000004190	-	100	95.222	Stegastes_partitus
ENSORLG00000022739	-	99	77.364	ENSSPAG00000023341	-	99	77.364	Stegastes_partitus
ENSORLG00000022739	-	98	88.024	ENSTGUG00000003316	-	99	88.024	Taeniopygia_guttata
ENSORLG00000022739	-	98	90.127	ENSTGUG00000008158	-	99	90.127	Taeniopygia_guttata
ENSORLG00000022739	-	95	99.306	ENSTRUG00000006280	-	92	99.306	Takifugu_rubripes
ENSORLG00000022739	-	99	91.150	ENSTRUG00000013604	pcbp3	99	91.150	Takifugu_rubripes
ENSORLG00000022739	-	98	84.314	ENSTTRG00000015075	-	99	84.314	Tursiops_truncatus
ENSORLG00000022739	-	98	89.521	ENSXETG00000011483	pcbp1	99	89.521	Xenopus_tropicalis
ENSORLG00000022739	-	94	74.576	ENSXETG00000010491	pcbp2	78	74.576	Xenopus_tropicalis
ENSORLG00000022739	-	99	88.952	ENSXCOG00000020481	pcbp3	99	88.952	Xiphophorus_couchianus
ENSORLG00000022739	-	99	98.773	ENSXMAG00000028711	-	99	98.773	Xiphophorus_maculatus
ENSORLG00000022739	-	99	89.744	ENSXMAG00000008175	pcbp3	99	89.744	Xiphophorus_maculatus