EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000022798 (Gene tree)
Gene ID: 101173062
Gene Symbol: cpsf4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 8800 bases
Position: chr8:19277020-19285819
Accession: 101173062
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000017236	zf-CCCH	PF00642.24	4.2e-22	1	2
ENSORLP00000017236	zf-CCCH	PF00642.24	4.2e-22	2	2
ENSORLP00000036677	zf-CCCH	PF00642.24	4.2e-22	1	2
ENSORLP00000036677	zf-CCCH	PF00642.24	4.2e-22	2	2
ENSORLP00000036677	zf-CCHC	PF00098.23	4.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000028262	-	4427	XM_004071784	ENSORLP00000036677	265 (aa)	XP_004071832	UPI0000EA0FB9
ENSORLT00000017237	-	1604	-	ENSORLP00000017236	266 (aa)	-	H2MF66

Gene Model

Click here to download ENSORLG00000022798's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000022798's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000022798	cpsf4	100	83.271	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSORLG00000022798	cpsf4	67	84.746	ENSAPOG00000004921	cpsf4	100	84.746	Acanthochromis_polyacanthus
ENSORLG00000022798	cpsf4	100	83.271	ENSAMEG00000006252	CPSF4	100	83.271	Ailuropoda_melanoleuca
ENSORLG00000022798	cpsf4	100	84.151	ENSACIG00000009248	cpsf4	100	85.283	Amphilophus_citrinellus
ENSORLG00000022798	cpsf4	100	92.830	ENSAOCG00000019616	cpsf4	100	92.830	Amphiprion_ocellaris
ENSORLG00000022798	cpsf4	100	92.830	ENSAPEG00000011679	cpsf4	100	92.830	Amphiprion_percula
ENSORLG00000022798	cpsf4	100	91.011	ENSATEG00000007010	cpsf4	100	91.011	Anabas_testudineus
ENSORLG00000022798	cpsf4	100	81.784	ENSACAG00000012941	CPSF4	89	81.784	Anolis_carolinensis
ENSORLG00000022798	cpsf4	100	83.271	ENSANAG00000021360	CPSF4	100	83.271	Aotus_nancymaae
ENSORLG00000022798	cpsf4	100	92.453	ENSACLG00000010374	cpsf4	100	92.453	Astatotilapia_calliptera
ENSORLG00000022798	cpsf4	100	84.074	ENSAMXG00000031647	cpsf4	100	84.058	Astyanax_mexicanus
ENSORLG00000022798	cpsf4	100	79.623	ENSBTAG00000002090	CPSF4	100	79.623	Bos_taurus
ENSORLG00000022798	cpsf4	100	83.271	ENSCJAG00000015826	CPSF4	100	83.271	Callithrix_jacchus
ENSORLG00000022798	cpsf4	100	83.271	ENSCAFG00000015036	CPSF4	99	87.879	Canis_familiaris
ENSORLG00000022798	cpsf4	100	78.810	ENSCAFG00020014462	CPSF4	100	78.810	Canis_lupus_dingo
ENSORLG00000022798	cpsf4	100	82.900	ENSCHIG00000014313	CPSF4	100	82.900	Capra_hircus
ENSORLG00000022798	cpsf4	100	80.755	ENSTSYG00000005712	-	100	80.755	Carlito_syrichta
ENSORLG00000022798	cpsf4	100	73.308	ENSTSYG00000014604	-	100	73.308	Carlito_syrichta
ENSORLG00000022798	cpsf4	89	74.262	ENSTSYG00000008195	-	99	74.390	Carlito_syrichta
ENSORLG00000022798	cpsf4	82	82.273	ENSCAPG00000013881	CPSF4	88	81.532	Cavia_aperea
ENSORLG00000022798	cpsf4	100	80.377	ENSCPOG00000001783	CPSF4	100	80.377	Cavia_porcellus
ENSORLG00000022798	cpsf4	100	83.271	ENSCCAG00000028291	CPSF4	100	83.271	Cebus_capucinus
ENSORLG00000022798	cpsf4	100	83.271	ENSCATG00000038440	CPSF4	100	83.271	Cercocebus_atys
ENSORLG00000022798	cpsf4	100	83.271	ENSCLAG00000007050	CPSF4	100	83.271	Chinchilla_lanigera
ENSORLG00000022798	cpsf4	100	83.271	ENSCSAG00000017795	CPSF4	100	83.271	Chlorocebus_sabaeus
ENSORLG00000022798	cpsf4	80	82.407	ENSCPBG00000020869	CPSF4	100	82.407	Chrysemys_picta_bellii
ENSORLG00000022798	cpsf4	62	79.394	ENSCPBG00000010269	-	99	79.394	Chrysemys_picta_bellii
ENSORLG00000022798	cpsf4	97	56.641	ENSCING00000021080	-	97	56.641	Ciona_intestinalis
ENSORLG00000022798	cpsf4	96	54.417	ENSCSAVG00000011469	-	97	54.417	Ciona_savignyi
ENSORLG00000022798	cpsf4	100	83.271	ENSCANG00000019384	CPSF4	100	83.271	Colobus_angolensis_palliatus
ENSORLG00000022798	cpsf4	100	80.377	ENSCGRG00001024184	Cpsf4	100	80.377	Cricetulus_griseus_chok1gshd
ENSORLG00000022798	cpsf4	100	83.271	ENSCGRG00000013892	Cpsf4	100	83.271	Cricetulus_griseus_crigri
ENSORLG00000022798	cpsf4	100	89.811	ENSCSEG00000019055	cpsf4	100	89.811	Cynoglossus_semilaevis
ENSORLG00000022798	cpsf4	100	91.698	ENSCVAG00000016528	cpsf4	100	91.698	Cyprinodon_variegatus
ENSORLG00000022798	cpsf4	100	84.133	ENSDARG00000020217	cpsf4	100	84.133	Danio_rerio
ENSORLG00000022798	cpsf4	100	83.271	ENSDNOG00000006344	CPSF4	100	83.271	Dasypus_novemcinctus
ENSORLG00000022798	cpsf4	80	82.488	ENSDORG00000000742	Cpsf4	100	82.488	Dipodomys_ordii
ENSORLG00000022798	cpsf4	100	53.846	FBgn0015621	Clp	99	53.846	Drosophila_melanogaster
ENSORLG00000022798	cpsf4	71	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSORLG00000022798	cpsf4	99	64.259	ENSEBUG00000012552	cpsf4	98	64.259	Eptatretus_burgeri
ENSORLG00000022798	cpsf4	100	80.377	ENSEASG00005002487	CPSF4	100	80.377	Equus_asinus_asinus
ENSORLG00000022798	cpsf4	100	83.271	ENSECAG00000007525	CPSF4	100	83.271	Equus_caballus
ENSORLG00000022798	cpsf4	63	92.537	ENSEEUG00000002158	CPSF4	73	92.537	Erinaceus_europaeus
ENSORLG00000022798	cpsf4	100	84.191	ENSELUG00000011481	cpsf4	100	84.559	Esox_lucius
ENSORLG00000022798	cpsf4	100	83.271	ENSFCAG00000015070	CPSF4	100	83.271	Felis_catus
ENSORLG00000022798	cpsf4	62	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSORLG00000022798	cpsf4	100	79.623	ENSFALG00000013799	CPSF4	100	79.623	Ficedula_albicollis
ENSORLG00000022798	cpsf4	90	81.893	ENSFDAG00000014092	CPSF4	100	81.893	Fukomys_damarensis
ENSORLG00000022798	cpsf4	100	91.698	ENSFHEG00000010880	cpsf4	100	91.698	Fundulus_heteroclitus
ENSORLG00000022798	cpsf4	100	81.618	ENSGMOG00000002330	cpsf4	100	81.618	Gadus_morhua
ENSORLG00000022798	cpsf4	100	80.000	ENSGALG00000004714	CPSF4	100	80.000	Gallus_gallus
ENSORLG00000022798	cpsf4	99	35.714	ENSGALG00000004441	-	98	35.714	Gallus_gallus
ENSORLG00000022798	cpsf4	100	91.698	ENSGAFG00000010580	cpsf4	100	91.698	Gambusia_affinis
ENSORLG00000022798	cpsf4	100	85.075	ENSGACG00000007792	cpsf4	100	85.075	Gasterosteus_aculeatus
ENSORLG00000022798	cpsf4	69	75.824	ENSGAGG00000020579	-	100	75.824	Gopherus_agassizii
ENSORLG00000022798	cpsf4	100	82.900	ENSGAGG00000021835	CPSF4	100	82.900	Gopherus_agassizii
ENSORLG00000022798	cpsf4	100	83.271	ENSGGOG00000015131	CPSF4	100	83.271	Gorilla_gorilla
ENSORLG00000022798	cpsf4	100	92.453	ENSHBUG00000013699	cpsf4	100	92.453	Haplochromis_burtoni
ENSORLG00000022798	cpsf4	100	82.288	ENSHGLG00000017150	CPSF4	100	82.288	Heterocephalus_glaber_female
ENSORLG00000022798	cpsf4	67	64.407	ENSHGLG00100017302	-	93	62.944	Heterocephalus_glaber_male
ENSORLG00000022798	cpsf4	87	79.237	ENSHGLG00100009215	-	100	79.237	Heterocephalus_glaber_male
ENSORLG00000022798	cpsf4	100	87.218	ENSHCOG00000004397	cpsf4	100	87.218	Hippocampus_comes
ENSORLG00000022798	cpsf4	100	84.871	ENSIPUG00000017147	cpsf4	100	84.871	Ictalurus_punctatus
ENSORLG00000022798	cpsf4	100	83.271	ENSSTOG00000001688	CPSF4	100	83.271	Ictidomys_tridecemlineatus
ENSORLG00000022798	cpsf4	100	83.271	ENSJJAG00000019426	Cpsf4	100	83.271	Jaculus_jaculus
ENSORLG00000022798	cpsf4	100	91.321	ENSKMAG00000015642	cpsf4	100	91.321	Kryptolebias_marmoratus
ENSORLG00000022798	cpsf4	100	83.333	ENSLACG00000010938	CPSF4	100	83.333	Latimeria_chalumnae
ENSORLG00000022798	cpsf4	100	60.150	ENSLACG00000018470	-	100	60.150	Latimeria_chalumnae
ENSORLG00000022798	cpsf4	100	82.900	ENSLOCG00000004814	cpsf4	100	82.900	Lepisosteus_oculatus
ENSORLG00000022798	cpsf4	100	82.900	ENSLAFG00000000159	CPSF4	100	82.900	Loxodonta_africana
ENSORLG00000022798	cpsf4	100	83.271	ENSMFAG00000001462	CPSF4	100	83.271	Macaca_fascicularis
ENSORLG00000022798	cpsf4	100	83.271	ENSMMUG00000019191	CPSF4	100	83.271	Macaca_mulatta
ENSORLG00000022798	cpsf4	100	83.271	ENSMNEG00000032306	CPSF4	100	83.271	Macaca_nemestrina
ENSORLG00000022798	cpsf4	100	83.271	ENSMLEG00000034721	CPSF4	100	83.271	Mandrillus_leucophaeus
ENSORLG00000022798	cpsf4	100	90.977	ENSMAMG00000006244	cpsf4	100	90.977	Mastacembelus_armatus
ENSORLG00000022798	cpsf4	100	92.453	ENSMZEG00005007515	cpsf4	100	92.453	Maylandia_zebra
ENSORLG00000022798	cpsf4	87	77.922	ENSMGAG00000004235	CPSF4	100	77.922	Meleagris_gallopavo
ENSORLG00000022798	cpsf4	100	83.271	ENSMAUG00000021253	Cpsf4	100	83.271	Mesocricetus_auratus
ENSORLG00000022798	cpsf4	100	83.271	ENSMICG00000017429	CPSF4	100	83.271	Microcebus_murinus
ENSORLG00000022798	cpsf4	100	83.271	ENSMOCG00000014901	Cpsf4	100	83.271	Microtus_ochrogaster
ENSORLG00000022798	cpsf4	100	90.602	ENSMMOG00000001813	cpsf4	100	90.602	Mola_mola
ENSORLG00000022798	cpsf4	100	84.387	ENSMODG00000001367	CPSF4	100	84.387	Monodelphis_domestica
ENSORLG00000022798	cpsf4	100	90.602	ENSMALG00000012611	cpsf4	100	90.602	Monopterus_albus
ENSORLG00000022798	cpsf4	100	83.271	MGP_CAROLIEiJ_G0028012	Cpsf4	100	83.271	Mus_caroli
ENSORLG00000022798	cpsf4	100	83.271	ENSMUSG00000029625	Cpsf4	100	83.271	Mus_musculus
ENSORLG00000022798	cpsf4	100	83.271	MGP_PahariEiJ_G0024581	Cpsf4	100	83.271	Mus_pahari
ENSORLG00000022798	cpsf4	100	83.271	MGP_SPRETEiJ_G0029013	Cpsf4	100	83.271	Mus_spretus
ENSORLG00000022798	cpsf4	100	83.271	ENSMPUG00000016508	CPSF4	100	83.271	Mustela_putorius_furo
ENSORLG00000022798	cpsf4	87	79.221	ENSMLUG00000010980	CPSF4	100	77.922	Myotis_lucifugus
ENSORLG00000022798	cpsf4	100	83.271	ENSNGAG00000001567	Cpsf4	100	83.271	Nannospalax_galili
ENSORLG00000022798	cpsf4	91	91.701	ENSNBRG00000003943	cpsf4	98	91.701	Neolamprologus_brichardi
ENSORLG00000022798	cpsf4	100	81.955	ENSNLEG00000011074	CPSF4	100	81.955	Nomascus_leucogenys
ENSORLG00000022798	cpsf4	100	84.387	ENSMEUG00000006955	CPSF4	100	84.387	Notamacropus_eugenii
ENSORLG00000022798	cpsf4	100	82.900	ENSOPRG00000013663	CPSF4	100	82.900	Ochotona_princeps
ENSORLG00000022798	cpsf4	98	68.966	ENSODEG00000018283	-	91	68.966	Octodon_degus
ENSORLG00000022798	cpsf4	100	63.235	ENSODEG00000009779	-	100	63.235	Octodon_degus
ENSORLG00000022798	cpsf4	100	83.271	ENSODEG00000011181	-	100	83.271	Octodon_degus
ENSORLG00000022798	cpsf4	100	92.075	ENSONIG00000008495	cpsf4	100	92.075	Oreochromis_niloticus
ENSORLG00000022798	cpsf4	100	52.878	ENSOANG00000009568	-	100	52.878	Ornithorhynchus_anatinus
ENSORLG00000022798	cpsf4	87	82.051	ENSOANG00000007729	CPSF4	100	82.051	Ornithorhynchus_anatinus
ENSORLG00000022798	cpsf4	100	82.900	ENSOCUG00000002437	CPSF4	70	82.900	Oryctolagus_cuniculus
ENSORLG00000022798	cpsf4	100	100.000	ENSORLG00020008548	cpsf4	100	100.000	Oryzias_latipes_hni
ENSORLG00000022798	cpsf4	100	99.623	ENSORLG00015019575	cpsf4	100	99.623	Oryzias_latipes_hsok
ENSORLG00000022798	cpsf4	100	97.358	ENSOMEG00000005176	cpsf4	100	97.358	Oryzias_melastigma
ENSORLG00000022798	cpsf4	100	83.271	ENSOGAG00000010884	CPSF4	100	83.271	Otolemur_garnettii
ENSORLG00000022798	cpsf4	100	72.894	ENSOARG00000018668	CPSF4	100	72.894	Ovis_aries
ENSORLG00000022798	cpsf4	100	83.271	ENSPPAG00000043355	CPSF4	100	83.271	Pan_paniscus
ENSORLG00000022798	cpsf4	100	83.271	ENSPPRG00000003134	CPSF4	100	83.271	Panthera_pardus
ENSORLG00000022798	cpsf4	90	82.645	ENSPTIG00000005604	CPSF4	90	82.645	Panthera_tigris_altaica
ENSORLG00000022798	cpsf4	100	83.271	ENSPTRG00000019453	CPSF4	100	83.271	Pan_troglodytes
ENSORLG00000022798	cpsf4	100	83.271	ENSPANG00000023123	CPSF4	100	83.271	Papio_anubis
ENSORLG00000022798	cpsf4	100	82.482	ENSPKIG00000014278	cpsf4	100	82.482	Paramormyrops_kingsleyae
ENSORLG00000022798	cpsf4	81	57.944	ENSPSIG00000018198	-	100	57.944	Pelodiscus_sinensis
ENSORLG00000022798	cpsf4	80	81.944	ENSPSIG00000011229	CPSF4	100	81.944	Pelodiscus_sinensis
ENSORLG00000022798	cpsf4	100	79.245	ENSPMGG00000017735	cpsf4	100	79.245	Periophthalmus_magnuspinnatus
ENSORLG00000022798	cpsf4	100	83.271	ENSPEMG00000004508	Cpsf4	100	83.271	Peromyscus_maniculatus_bairdii
ENSORLG00000022798	cpsf4	100	84.387	ENSPCIG00000024776	CPSF4	100	84.387	Phascolarctos_cinereus
ENSORLG00000022798	cpsf4	100	91.698	ENSPFOG00000014912	cpsf4	100	91.698	Poecilia_formosa
ENSORLG00000022798	cpsf4	100	84.151	ENSPLAG00000009599	cpsf4	100	84.151	Poecilia_latipinna
ENSORLG00000022798	cpsf4	100	91.698	ENSPMEG00000009790	cpsf4	100	91.698	Poecilia_mexicana
ENSORLG00000022798	cpsf4	100	90.943	ENSPREG00000018166	cpsf4	100	90.943	Poecilia_reticulata
ENSORLG00000022798	cpsf4	87	81.624	ENSPPYG00000017378	CPSF4	100	81.624	Pongo_abelii
ENSORLG00000022798	cpsf4	100	82.900	ENSPCAG00000001892	CPSF4	100	82.900	Procavia_capensis
ENSORLG00000022798	cpsf4	100	83.271	ENSPCOG00000012771	CPSF4	100	83.271	Propithecus_coquereli
ENSORLG00000022798	cpsf4	100	78.439	ENSPVAG00000007531	CPSF4	100	78.439	Pteropus_vampyrus
ENSORLG00000022798	cpsf4	100	92.453	ENSPNYG00000018559	cpsf4	100	92.453	Pundamilia_nyererei
ENSORLG00000022798	cpsf4	100	85.185	ENSPNAG00000003736	cpsf4	100	85.185	Pygocentrus_nattereri
ENSORLG00000022798	cpsf4	100	81.132	ENSRNOG00000000985	Cpsf4	100	80.000	Rattus_norvegicus
ENSORLG00000022798	cpsf4	87	82.051	ENSRBIG00000033886	CPSF4	100	82.051	Rhinopithecus_bieti
ENSORLG00000022798	cpsf4	100	80.377	ENSRROG00000040431	CPSF4	100	80.377	Rhinopithecus_roxellana
ENSORLG00000022798	cpsf4	100	83.271	ENSSBOG00000020493	CPSF4	100	83.271	Saimiri_boliviensis_boliviensis
ENSORLG00000022798	cpsf4	100	84.387	ENSSHAG00000011533	CPSF4	100	84.387	Sarcophilus_harrisii
ENSORLG00000022798	cpsf4	100	82.246	ENSSFOG00015007883	cpsf4	100	82.246	Scleropages_formosus
ENSORLG00000022798	cpsf4	100	82.707	ENSSMAG00000006374	cpsf4	100	82.707	Scophthalmus_maximus
ENSORLG00000022798	cpsf4	100	91.353	ENSSDUG00000018887	cpsf4	100	91.353	Seriola_dumerili
ENSORLG00000022798	cpsf4	100	91.353	ENSSLDG00000019078	cpsf4	100	91.353	Seriola_lalandi_dorsalis
ENSORLG00000022798	cpsf4	87	82.051	ENSSARG00000012416	CPSF4	100	82.051	Sorex_araneus
ENSORLG00000022798	cpsf4	96	60.630	ENSSPUG00000014803	-	97	60.630	Sphenodon_punctatus
ENSORLG00000022798	cpsf4	100	82.963	ENSSPUG00000003549	CPSF4	100	82.963	Sphenodon_punctatus
ENSORLG00000022798	cpsf4	100	85.283	ENSSPAG00000006174	cpsf4	100	85.283	Stegastes_partitus
ENSORLG00000022798	cpsf4	100	80.377	ENSSSCG00000026896	CPSF4	100	80.377	Sus_scrofa
ENSORLG00000022798	cpsf4	100	78.652	ENSTGUG00000007552	CPSF4	100	78.652	Taeniopygia_guttata
ENSORLG00000022798	cpsf4	100	87.970	ENSTRUG00000024220	cpsf4	100	87.970	Takifugu_rubripes
ENSORLG00000022798	cpsf4	100	88.302	ENSTNIG00000006265	cpsf4	100	89.057	Tetraodon_nigroviridis
ENSORLG00000022798	cpsf4	87	73.077	ENSTBEG00000011406	CPSF4	100	73.077	Tupaia_belangeri
ENSORLG00000022798	cpsf4	100	72.862	ENSTTRG00000003007	CPSF4	100	72.862	Tursiops_truncatus
ENSORLG00000022798	cpsf4	91	79.835	ENSUAMG00000008051	CPSF4	85	78.601	Ursus_americanus
ENSORLG00000022798	cpsf4	100	81.132	ENSUMAG00000009474	CPSF4	100	80.000	Ursus_maritimus
ENSORLG00000022798	cpsf4	100	78.113	ENSVVUG00000008824	CPSF4	100	80.377	Vulpes_vulpes
ENSORLG00000022798	cpsf4	100	78.853	ENSXETG00000009892	cpsf4	100	78.853	Xenopus_tropicalis
ENSORLG00000022798	cpsf4	99	58.993	ENSXETG00000004641	cpsf4l	99	58.993	Xenopus_tropicalis
ENSORLG00000022798	cpsf4	100	92.075	ENSXCOG00000016040	cpsf4	100	92.075	Xiphophorus_couchianus
ENSORLG00000022798	cpsf4	100	91.698	ENSXMAG00000024670	cpsf4	100	91.698	Xiphophorus_maculatus