EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000022847 (Gene tree)
Gene ID: 105356504
Gene Symbol: cth1
Alias: -
Full Name: mRNA decay activator protein ZFP36L2
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 1185 bases
Position: chr18:29103873-29105057
Accession: 105356504
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000044828	zf-CCCH	PF00642.24	4.2e-28	1	4
ENSORLP00000044828	zf-CCCH	PF00642.24	4.2e-28	2	4
ENSORLP00000044828	zf-CCCH	PF00642.24	4.2e-28	3	4
ENSORLP00000044828	zf-CCCH	PF00642.24	4.2e-28	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000038938	-	1099	XM_023965875	ENSORLP00000044828	297 (aa)	XP_023821643	UPI0009D9C1D2

Gene Model

Click here to download ENSORLG00000022847's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola04114	Oocyte meiosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000022847's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000022847	cth1	89	59.206	ENSAPOG00000012552	cth1	100	58.621	Acanthochromis_polyacanthus
ENSORLG00000022847	cth1	88	60.949	ENSACIG00000016026	cth1	99	57.778	Amphilophus_citrinellus
ENSORLG00000022847	cth1	100	60.256	ENSAOCG00000001644	cth1	100	57.372	Amphiprion_ocellaris
ENSORLG00000022847	cth1	100	60.256	ENSAPEG00000008930	cth1	100	57.372	Amphiprion_percula
ENSORLG00000022847	cth1	99	61.111	ENSATEG00000002281	cth1	97	59.752	Anabas_testudineus
ENSORLG00000022847	cth1	84	58.730	ENSACLG00000015353	cth1	94	58.271	Astatotilapia_calliptera
ENSORLG00000022847	cth1	96	51.887	ENSAMXG00000025717	cth1	99	50.309	Astyanax_mexicanus
ENSORLG00000022847	cth1	100	57.846	ENSCSEG00000014617	cth1	100	59.385	Cynoglossus_semilaevis
ENSORLG00000022847	cth1	100	55.195	ENSCVAG00000001680	cth1	65	55.987	Cyprinodon_variegatus
ENSORLG00000022847	cth1	85	52.857	ENSDARG00000057328	cth1	96	52.229	Danio_rerio
ENSORLG00000022847	cth1	88	51.827	ENSELUG00000012738	cth1	93	49.844	Esox_lucius
ENSORLG00000022847	cth1	100	53.035	ENSFHEG00000022665	cth1	100	53.355	Fundulus_heteroclitus
ENSORLG00000022847	cth1	99	58.033	ENSGMOG00000007360	cth1	100	54.194	Gadus_morhua
ENSORLG00000022847	cth1	100	55.205	ENSGAFG00000019288	cth1	100	54.259	Gambusia_affinis
ENSORLG00000022847	cth1	99	62.583	ENSGACG00000000802	cth1	99	60.133	Gasterosteus_aculeatus
ENSORLG00000022847	cth1	100	57.667	ENSHBUG00000014400	cth1	100	57.000	Haplochromis_burtoni
ENSORLG00000022847	cth1	99	50.167	ENSHCOG00000010276	cth1	99	49.000	Hippocampus_comes
ENSORLG00000022847	cth1	91	55.482	ENSIPUG00000018040	cth1	92	55.150	Ictalurus_punctatus
ENSORLG00000022847	cth1	100	61.716	ENSKMAG00000005944	cth1	100	59.736	Kryptolebias_marmoratus
ENSORLG00000022847	cth1	100	60.815	ENSLBEG00000019253	cth1	100	61.514	Labrus_bergylta
ENSORLG00000022847	cth1	70	52.577	ENSLOCG00000002047	cth1	90	52.577	Lepisosteus_oculatus
ENSORLG00000022847	cth1	88	47.522	ENSMAMG00000001525	cth1	63	55.745	Mastacembelus_armatus
ENSORLG00000022847	cth1	100	57.667	ENSMZEG00005022335	cth1	100	56.667	Maylandia_zebra
ENSORLG00000022847	cth1	94	57.947	ENSMMOG00000020518	cth1	100	57.807	Mola_mola
ENSORLG00000022847	cth1	100	52.139	ENSMALG00000020738	cth1	58	60.000	Monopterus_albus
ENSORLG00000022847	cth1	89	60.150	ENSNBRG00000022789	cth1	88	59.398	Neolamprologus_brichardi
ENSORLG00000022847	cth1	99	58.553	ENSONIG00000021318	cth1	99	58.224	Oreochromis_niloticus
ENSORLG00000022847	cth1	100	98.990	ENSORLG00020011979	cth1	100	98.990	Oryzias_latipes_hni
ENSORLG00000022847	cth1	100	98.990	ENSORLG00015013084	cth1	100	98.990	Oryzias_latipes_hsok
ENSORLG00000022847	cth1	100	68.750	ENSOMEG00000005809	cth1	85	70.957	Oryzias_melastigma
ENSORLG00000022847	cth1	86	51.557	ENSPKIG00000015883	cth1	86	50.865	Paramormyrops_kingsleyae
ENSORLG00000022847	cth1	99	56.667	ENSPMGG00000004275	cth1	96	57.878	Periophthalmus_magnuspinnatus
ENSORLG00000022847	cth1	100	59.236	ENSPFOG00000013583	cth1	94	55.591	Poecilia_formosa
ENSORLG00000022847	cth1	100	58.917	ENSPLAG00000018158	cth1	94	55.272	Poecilia_latipinna
ENSORLG00000022847	cth1	100	58.917	ENSPMEG00000005744	cth1	100	55.911	Poecilia_mexicana
ENSORLG00000022847	cth1	99	57.692	ENSPREG00000004099	cth1	100	55.769	Poecilia_reticulata
ENSORLG00000022847	cth1	91	57.875	ENSPNYG00000016705	cth1	93	57.143	Pundamilia_nyererei
ENSORLG00000022847	cth1	89	55.219	ENSPNAG00000013147	cth1	90	52.189	Pygocentrus_nattereri
ENSORLG00000022847	cth1	91	52.508	ENSSFOG00015017190	cth1	87	50.709	Scleropages_formosus
ENSORLG00000022847	cth1	100	59.259	ENSSMAG00000007977	cth1	100	60.559	Scophthalmus_maximus
ENSORLG00000022847	cth1	100	61.631	ENSSDUG00000004321	cth1	100	62.236	Seriola_dumerili
ENSORLG00000022847	cth1	100	60.241	ENSSLDG00000004516	-	100	62.349	Seriola_lalandi_dorsalis
ENSORLG00000022847	cth1	99	60.423	ENSSLDG00000010023	-	100	62.538	Seriola_lalandi_dorsalis
ENSORLG00000022847	cth1	100	60.241	ENSSLDG00000012760	cth1	100	62.349	Seriola_lalandi_dorsalis
ENSORLG00000022847	cth1	100	57.994	ENSSPAG00000018659	cth1	100	58.491	Stegastes_partitus
ENSORLG00000022847	cth1	100	52.812	ENSTRUG00000012770	cth1	100	54.688	Takifugu_rubripes
ENSORLG00000022847	cth1	100	56.832	ENSTNIG00000000740	cth1	100	55.280	Tetraodon_nigroviridis
ENSORLG00000022847	cth1	82	55.102	ENSXCOG00000003710	cth1	88	52.869	Xiphophorus_couchianus
ENSORLG00000022847	cth1	100	56.190	ENSXMAG00000023885	cth1	100	53.185	Xiphophorus_maculatus