EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000023125 (Gene tree)
Gene ID: 111947722
Gene Symbol: casc3
Alias: -
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 9640 bases
Position: chr8:498727-508366
Accession: 111947722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000043908	Btz	PF09405.10	4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000044979	-	6315	XM_023957200	ENSORLP00000043908	721 (aa)	XP_023812968	UPI000CE1D7E4

Gene Model

Click here to download ENSORLG00000023125's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03013	RNA transport	KEGG
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000023125's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000023125	casc3	100	66.450	ENSAOCG00000016676	casc3	100	66.102	Amphiprion_ocellaris
ENSORLG00000023125	casc3	100	66.928	ENSAPEG00000006787	casc3	100	66.667	Amphiprion_percula
ENSORLG00000023125	casc3	100	66.624	ENSATEG00000017196	casc3	100	64.396	Anabas_testudineus
ENSORLG00000023125	casc3	55	57.368	ENSANAG00000031954	-	86	55.932	Aotus_nancymaae
ENSORLG00000023125	casc3	79	50.654	ENSANAG00000034820	-	60	58.750	Aotus_nancymaae
ENSORLG00000023125	casc3	100	67.834	ENSACLG00000016198	casc3	100	67.137	Astatotilapia_calliptera
ENSORLG00000023125	casc3	81	51.485	ENSCAFG00020018882	CASC3	83	53.355	Canis_lupus_dingo
ENSORLG00000023125	casc3	100	61.209	ENSCSEG00000010047	casc3	78	63.974	Cynoglossus_semilaevis
ENSORLG00000023125	casc3	100	70.950	ENSCVAG00000014935	casc3	100	72.460	Cyprinodon_variegatus
ENSORLG00000023125	casc3	99	55.150	ENSDARG00000029911	casc3	98	55.468	Danio_rerio
ENSORLG00000023125	casc3	99	31.605	ENSEBUG00000010654	casc3	67	38.235	Eptatretus_burgeri
ENSORLG00000023125	casc3	81	52.117	ENSEASG00005002909	CASC3	84	51.875	Equus_asinus_asinus
ENSORLG00000023125	casc3	100	56.250	ENSELUG00000015093	casc3	100	54.859	Esox_lucius
ENSORLG00000023125	casc3	100	70.238	ENSFHEG00000015793	casc3	100	68.742	Fundulus_heteroclitus
ENSORLG00000023125	casc3	98	66.447	ENSGAFG00000017148	casc3	86	67.104	Gambusia_affinis
ENSORLG00000023125	casc3	60	64.667	ENSGAGG00000008432	CASC3	74	67.424	Gopherus_agassizii
ENSORLG00000023125	casc3	100	68.093	ENSHBUG00000013155	casc3	100	67.266	Haplochromis_burtoni
ENSORLG00000023125	casc3	100	62.533	ENSHCOG00000002664	casc3	94	60.820	Hippocampus_comes
ENSORLG00000023125	casc3	99	54.323	ENSIPUG00000002679	casc3	98	54.628	Ictalurus_punctatus
ENSORLG00000023125	casc3	92	65.531	ENSKMAG00000019507	casc3	99	65.395	Kryptolebias_marmoratus
ENSORLG00000023125	casc3	80	67.834	ENSLBEG00000005435	casc3	100	63.041	Labrus_bergylta
ENSORLG00000023125	casc3	80	50.323	ENSLACG00000013200	CASC3	72	51.613	Latimeria_chalumnae
ENSORLG00000023125	casc3	68	68.246	ENSLOCG00000013518	casc3	58	71.287	Lepisosteus_oculatus
ENSORLG00000023125	casc3	99	44.213	ENSMFAG00000041496	CASC3	82	53.481	Macaca_fascicularis
ENSORLG00000023125	casc3	96	65.241	ENSMAMG00000005235	casc3	96	63.770	Mastacembelus_armatus
ENSORLG00000023125	casc3	100	67.834	ENSMZEG00005003815	casc3	100	67.137	Maylandia_zebra
ENSORLG00000023125	casc3	89	44.792	ENSMGAG00000013247	CASC3	50	52.104	Meleagris_gallopavo
ENSORLG00000023125	casc3	100	65.116	ENSMMOG00000014339	casc3	100	64.005	Mola_mola
ENSORLG00000023125	casc3	62	92.784	ENSMALG00000019771	casc3	84	80.488	Monopterus_albus
ENSORLG00000023125	casc3	63	60.563	ENSMEUG00000015662	CASC3	61	62.069	Notamacropus_eugenii
ENSORLG00000023125	casc3	100	66.282	ENSONIG00000009337	casc3	100	66.069	Oreochromis_niloticus
ENSORLG00000023125	casc3	99	66.846	ENSPFOG00000017632	casc3	98	66.802	Poecilia_formosa
ENSORLG00000023125	casc3	100	68.182	ENSPLAG00000005268	casc3	100	68.442	Poecilia_latipinna
ENSORLG00000023125	casc3	79	68.926	ENSPREG00000011856	casc3	91	69.752	Poecilia_reticulata
ENSORLG00000023125	casc3	100	67.964	ENSPNYG00000011962	casc3	100	67.266	Pundamilia_nyererei
ENSORLG00000023125	casc3	71	52.063	ENSRNOG00000009716	Casc3	82	53.448	Rattus_norvegicus
ENSORLG00000023125	casc3	100	63.990	ENSSMAG00000016096	casc3	78	67.308	Scophthalmus_maximus
ENSORLG00000023125	casc3	100	65.330	ENSSDUG00000016893	casc3	95	65.977	Seriola_dumerili
ENSORLG00000023125	casc3	78	74.834	ENSSLDG00000020308	casc3	99	71.304	Seriola_lalandi_dorsalis
ENSORLG00000023125	casc3	50	63.889	ENSSARG00000010378	CASC3	60	65.574	Sorex_araneus
ENSORLG00000023125	casc3	100	65.674	ENSSPAG00000023008	casc3	100	65.415	Stegastes_partitus
ENSORLG00000023125	casc3	59	54.167	ENSTGUG00000002300	CASC3	59	50.162	Taeniopygia_guttata
ENSORLG00000023125	casc3	96	65.235	ENSTRUG00000000673	casc3	95	63.662	Takifugu_rubripes
ENSORLG00000023125	casc3	100	61.282	ENSTNIG00000003208	casc3	100	61.694	Tetraodon_nigroviridis
ENSORLG00000023125	casc3	82	51.803	ENSUAMG00000015116	CASC3	83	53.205	Ursus_americanus
ENSORLG00000023125	casc3	64	55.495	ENSUMAG00000017697	CASC3	86	60.265	Ursus_maritimus
ENSORLG00000023125	casc3	100	66.581	ENSXMAG00000013937	casc3	100	68.903	Xiphophorus_maculatus