EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000023489 (Gene tree)
Gene ID: 101161663
Gene Symbol: sbds
Alias: -
Full Name: SBDS%2C ribosome maturation factor
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 5951 bases
Position: chr13:3591265-3597215
Accession: 101161663
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000036306	SBDS	PF01172.18	5.7e-35	1	1
ENSORLP00000036306	SBDS_C	PF09377.10	3.5e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000031682	-	4367	XM_004075240	ENSORLP00000036306	249 (aa)	XP_004075288	H2L7C9

Gene Model

Click here to download ENSORLG00000023489's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000023489's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000023489	sbds	100	80.321	ENSG00000126524	SBDS	97	84.337	Homo_sapiens
ENSORLG00000023489	sbds	100	91.566	ENSAPOG00000014285	sbds	100	91.566	Acanthochromis_polyacanthus
ENSORLG00000023489	sbds	100	80.321	ENSAMEG00000018167	SBDS	99	80.321	Ailuropoda_melanoleuca
ENSORLG00000023489	sbds	100	92.063	ENSACIG00000007308	sbds	100	92.063	Amphilophus_citrinellus
ENSORLG00000023489	sbds	100	91.968	ENSAOCG00000016770	sbds	100	91.968	Amphiprion_ocellaris
ENSORLG00000023489	sbds	100	91.968	ENSAPEG00000015897	sbds	100	91.968	Amphiprion_percula
ENSORLG00000023489	sbds	100	91.566	ENSATEG00000006901	sbds	100	91.566	Anabas_testudineus
ENSORLG00000023489	sbds	83	79.126	ENSANAG00000037501	-	99	79.126	Aotus_nancymaae
ENSORLG00000023489	sbds	93	76.190	ENSANAG00000024342	-	97	76.190	Aotus_nancymaae
ENSORLG00000023489	sbds	100	93.173	ENSACLG00000018750	sbds	100	93.173	Astatotilapia_calliptera
ENSORLG00000023489	sbds	100	85.944	ENSAMXG00000005361	sbds	99	85.944	Astyanax_mexicanus
ENSORLG00000023489	sbds	100	80.723	ENSBTAG00000004051	SBDS	99	80.723	Bos_taurus
ENSORLG00000023489	sbds	98	59.350	WBGene00021063	sbds-1	97	59.350	Caenorhabditis_elegans
ENSORLG00000023489	sbds	100	80.321	ENSCJAG00000041007	SBDS	99	80.321	Callithrix_jacchus
ENSORLG00000023489	sbds	100	78.884	ENSCAFG00000010797	SBDS	99	78.884	Canis_familiaris
ENSORLG00000023489	sbds	100	80.321	ENSCAFG00020005357	SBDS	99	80.321	Canis_lupus_dingo
ENSORLG00000023489	sbds	100	80.723	ENSCHIG00000026854	SBDS	99	80.723	Capra_hircus
ENSORLG00000023489	sbds	100	80.321	ENSTSYG00000033822	SBDS	99	80.321	Carlito_syrichta
ENSORLG00000023489	sbds	65	79.755	ENSCAPG00000006634	SBDS	99	79.755	Cavia_aperea
ENSORLG00000023489	sbds	100	81.526	ENSCPOG00000036143	SBDS	99	81.526	Cavia_porcellus
ENSORLG00000023489	sbds	100	80.321	ENSCCAG00000020671	SBDS	99	80.321	Cebus_capucinus
ENSORLG00000023489	sbds	100	80.321	ENSCATG00000039026	SBDS	99	80.321	Cercocebus_atys
ENSORLG00000023489	sbds	100	81.928	ENSCLAG00000005721	-	99	81.928	Chinchilla_lanigera
ENSORLG00000023489	sbds	99	56.048	ENSCLAG00000002113	-	99	56.048	Chinchilla_lanigera
ENSORLG00000023489	sbds	100	80.321	ENSCSAG00000018275	SBDS	99	80.321	Chlorocebus_sabaeus
ENSORLG00000023489	sbds	100	75.502	ENSCHOG00000003795	SBDS	99	75.502	Choloepus_hoffmanni
ENSORLG00000023489	sbds	100	84.337	ENSCPBG00000014893	SBDS	99	84.337	Chrysemys_picta_bellii
ENSORLG00000023489	sbds	99	68.145	ENSCSAVG00000011811	-	99	68.145	Ciona_savignyi
ENSORLG00000023489	sbds	100	79.920	ENSCANG00000032368	SBDS	99	79.920	Colobus_angolensis_palliatus
ENSORLG00000023489	sbds	65	79.755	ENSCGRG00001019886	Sbds	99	79.755	Cricetulus_griseus_chok1gshd
ENSORLG00000023489	sbds	83	80.583	ENSCGRG00000009211	Sbds	99	80.583	Cricetulus_griseus_crigri
ENSORLG00000023489	sbds	100	89.558	ENSCSEG00000005798	sbds	100	89.558	Cynoglossus_semilaevis
ENSORLG00000023489	sbds	100	91.165	ENSCVAG00000001053	sbds	100	91.165	Cyprinodon_variegatus
ENSORLG00000023489	sbds	100	83.133	ENSDARG00000027803	sbds	99	83.133	Danio_rerio
ENSORLG00000023489	sbds	100	80.321	ENSDNOG00000041174	SBDS	99	80.321	Dasypus_novemcinctus
ENSORLG00000023489	sbds	100	82.329	ENSDORG00000026218	Sbds	99	82.329	Dipodomys_ordii
ENSORLG00000023489	sbds	91	62.719	FBgn0035714	CG8549	98	61.943	Drosophila_melanogaster
ENSORLG00000023489	sbds	93	60.776	ENSEBUG00000015780	sbds	99	60.776	Eptatretus_burgeri
ENSORLG00000023489	sbds	100	80.321	ENSEASG00005008821	SBDS	99	80.321	Equus_asinus_asinus
ENSORLG00000023489	sbds	100	80.321	ENSECAG00000008202	SBDS	99	80.321	Equus_caballus
ENSORLG00000023489	sbds	84	62.019	ENSEEUG00000004768	SBDS	95	63.452	Erinaceus_europaeus
ENSORLG00000023489	sbds	100	86.345	ENSELUG00000008382	sbds	99	86.345	Esox_lucius
ENSORLG00000023489	sbds	100	80.321	ENSFCAG00000022142	SBDS	99	80.321	Felis_catus
ENSORLG00000023489	sbds	100	84.739	ENSFALG00000013808	SBDS	99	84.739	Ficedula_albicollis
ENSORLG00000023489	sbds	100	81.526	ENSFDAG00000018947	-	99	81.526	Fukomys_damarensis
ENSORLG00000023489	sbds	100	88.353	ENSFHEG00000000708	sbds	100	88.353	Fundulus_heteroclitus
ENSORLG00000023489	sbds	100	87.149	ENSGMOG00000018356	sbds	99	87.149	Gadus_morhua
ENSORLG00000023489	sbds	100	81.526	ENSGALG00000027989	SBDS	99	81.526	Gallus_gallus
ENSORLG00000023489	sbds	92	88.696	ENSGAFG00000014204	sbds	100	88.696	Gambusia_affinis
ENSORLG00000023489	sbds	100	87.952	ENSGACG00000012697	sbds	100	87.952	Gasterosteus_aculeatus
ENSORLG00000023489	sbds	86	83.099	ENSGAGG00000022402	SBDS	99	83.099	Gopherus_agassizii
ENSORLG00000023489	sbds	96	62.500	ENSGGOG00000040023	-	92	62.500	Gorilla_gorilla
ENSORLG00000023489	sbds	100	93.173	ENSHBUG00000002660	sbds	100	93.173	Haplochromis_burtoni
ENSORLG00000023489	sbds	100	79.920	ENSHGLG00000009671	SBDS	99	79.920	Heterocephalus_glaber_female
ENSORLG00000023489	sbds	100	79.920	ENSHGLG00100011332	SBDS	99	79.920	Heterocephalus_glaber_male
ENSORLG00000023489	sbds	100	86.747	ENSHCOG00000018606	sbds	100	86.747	Hippocampus_comes
ENSORLG00000023489	sbds	100	86.747	ENSIPUG00000006536	sbds	99	86.747	Ictalurus_punctatus
ENSORLG00000023489	sbds	99	58.400	ENSJJAG00000003934	-	99	58.400	Jaculus_jaculus
ENSORLG00000023489	sbds	99	78.947	ENSJJAG00000012033	-	99	78.947	Jaculus_jaculus
ENSORLG00000023489	sbds	100	91.968	ENSKMAG00000018542	sbds	100	91.968	Kryptolebias_marmoratus
ENSORLG00000023489	sbds	100	90.763	ENSLBEG00000016687	sbds	100	90.763	Labrus_bergylta
ENSORLG00000023489	sbds	100	71.206	ENSLACG00000018916	SBDS	99	71.206	Latimeria_chalumnae
ENSORLG00000023489	sbds	100	85.141	ENSLOCG00000004073	sbds	99	85.141	Lepisosteus_oculatus
ENSORLG00000023489	sbds	100	80.321	ENSLAFG00000008763	SBDS	99	80.321	Loxodonta_africana
ENSORLG00000023489	sbds	100	80.321	ENSMFAG00000032620	SBDS	99	80.321	Macaca_fascicularis
ENSORLG00000023489	sbds	100	80.321	ENSMMUG00000045653	SBDS	99	80.321	Macaca_mulatta
ENSORLG00000023489	sbds	100	80.321	ENSMNEG00000031523	SBDS	99	80.321	Macaca_nemestrina
ENSORLG00000023489	sbds	100	64.427	ENSMLEG00000036826	SBDS	99	62.451	Mandrillus_leucophaeus
ENSORLG00000023489	sbds	100	92.369	ENSMAMG00000016062	sbds	100	92.369	Mastacembelus_armatus
ENSORLG00000023489	sbds	100	93.173	ENSMZEG00005024385	sbds	100	93.173	Maylandia_zebra
ENSORLG00000023489	sbds	100	81.526	ENSMGAG00000002119	SBDS	99	81.526	Meleagris_gallopavo
ENSORLG00000023489	sbds	100	65.462	ENSMAUG00000022214	-	100	65.462	Mesocricetus_auratus
ENSORLG00000023489	sbds	100	80.723	ENSMICG00000014366	SBDS	99	80.723	Microcebus_murinus
ENSORLG00000023489	sbds	100	81.124	ENSMOCG00000011739	Sbds	99	81.124	Microtus_ochrogaster
ENSORLG00000023489	sbds	100	81.600	ENSMMOG00000005061	sbds	100	81.600	Mola_mola
ENSORLG00000023489	sbds	100	81.928	ENSMODG00000006644	SBDS	99	81.928	Monodelphis_domestica
ENSORLG00000023489	sbds	100	87.550	ENSMALG00000010219	sbds	100	87.550	Monopterus_albus
ENSORLG00000023489	sbds	100	81.928	MGP_CAROLIEiJ_G0027800	Sbds	98	90.476	Mus_caroli
ENSORLG00000023489	sbds	100	82.329	ENSMUSG00000025337	Sbds	98	90.476	Mus_musculus
ENSORLG00000023489	sbds	100	81.928	MGP_PahariEiJ_G0024384	Sbds	98	90.476	Mus_pahari
ENSORLG00000023489	sbds	100	82.329	MGP_SPRETEiJ_G0028798	Sbds	98	90.476	Mus_spretus
ENSORLG00000023489	sbds	67	80.838	ENSMPUG00000016192	SBDS	96	80.838	Mustela_putorius_furo
ENSORLG00000023489	sbds	73	76.243	ENSMLUG00000013575	SBDS	99	76.243	Myotis_lucifugus
ENSORLG00000023489	sbds	100	81.526	ENSNGAG00000012093	Sbds	99	81.526	Nannospalax_galili
ENSORLG00000023489	sbds	100	93.173	ENSNBRG00000017027	sbds	100	93.173	Neolamprologus_brichardi
ENSORLG00000023489	sbds	100	80.321	ENSNLEG00000013288	SBDS	99	80.321	Nomascus_leucogenys
ENSORLG00000023489	sbds	100	82.329	ENSOPRG00000008721	SBDS	99	82.329	Ochotona_princeps
ENSORLG00000023489	sbds	100	62.651	ENSODEG00000000137	-	84	65.462	Octodon_degus
ENSORLG00000023489	sbds	100	73.494	ENSODEG00000019253	-	84	73.494	Octodon_degus
ENSORLG00000023489	sbds	100	62.651	ENSODEG00000001116	-	99	62.651	Octodon_degus
ENSORLG00000023489	sbds	100	92.369	ENSONIG00000005874	sbds	100	92.369	Oreochromis_niloticus
ENSORLG00000023489	sbds	82	79.412	ENSOANG00000007674	-	99	79.412	Ornithorhynchus_anatinus
ENSORLG00000023489	sbds	100	82.329	ENSOCUG00000003170	SBDS	99	82.329	Oryctolagus_cuniculus
ENSORLG00000023489	sbds	100	99.197	ENSORLG00020019282	sbds	100	99.197	Oryzias_latipes_hni
ENSORLG00000023489	sbds	100	99.197	ENSORLG00015008005	sbds	100	99.197	Oryzias_latipes_hsok
ENSORLG00000023489	sbds	100	96.787	ENSOMEG00000022747	sbds	100	96.787	Oryzias_melastigma
ENSORLG00000023489	sbds	100	68.675	ENSOGAG00000015036	-	99	68.675	Otolemur_garnettii
ENSORLG00000023489	sbds	100	81.124	ENSOGAG00000009011	-	99	81.124	Otolemur_garnettii
ENSORLG00000023489	sbds	100	80.723	ENSOARG00000010609	SBDS	99	80.723	Ovis_aries
ENSORLG00000023489	sbds	100	79.518	ENSPPAG00000043889	-	99	79.518	Pan_paniscus
ENSORLG00000023489	sbds	100	80.321	ENSPPRG00000002307	SBDS	99	80.321	Panthera_pardus
ENSORLG00000023489	sbds	100	80.321	ENSPTIG00000021308	SBDS	99	80.321	Panthera_tigris_altaica
ENSORLG00000023489	sbds	87	77.880	ENSPTRG00000048174	-	88	82.234	Pan_troglodytes
ENSORLG00000023489	sbds	100	80.321	ENSPTRG00000019254	SBDS	99	80.321	Pan_troglodytes
ENSORLG00000023489	sbds	100	67.068	ENSPTRG00000047744	-	99	67.068	Pan_troglodytes
ENSORLG00000023489	sbds	100	67.068	ENSPTRG00000050835	-	99	67.068	Pan_troglodytes
ENSORLG00000023489	sbds	100	80.321	ENSPANG00000004078	SBDS	99	80.321	Papio_anubis
ENSORLG00000023489	sbds	100	87.952	ENSPKIG00000006489	sbds	99	87.952	Paramormyrops_kingsleyae
ENSORLG00000023489	sbds	83	82.609	ENSPSIG00000014603	SBDS	99	82.609	Pelodiscus_sinensis
ENSORLG00000023489	sbds	100	91.165	ENSPMGG00000004246	sbds	100	91.165	Periophthalmus_magnuspinnatus
ENSORLG00000023489	sbds	100	81.526	ENSPEMG00000008728	Sbds	99	81.526	Peromyscus_maniculatus_bairdii
ENSORLG00000023489	sbds	100	82.329	ENSPCIG00000029718	SBDS	99	82.329	Phascolarctos_cinereus
ENSORLG00000023489	sbds	100	91.165	ENSPFOG00000015837	sbds	100	91.165	Poecilia_formosa
ENSORLG00000023489	sbds	100	91.566	ENSPLAG00000003641	sbds	100	91.566	Poecilia_latipinna
ENSORLG00000023489	sbds	100	91.165	ENSPMEG00000019483	sbds	100	91.165	Poecilia_mexicana
ENSORLG00000023489	sbds	100	91.165	ENSPREG00000018758	sbds	100	91.165	Poecilia_reticulata
ENSORLG00000023489	sbds	100	80.321	ENSPPYG00000017513	SBDS	99	80.321	Pongo_abelii
ENSORLG00000023489	sbds	100	80.321	ENSPCOG00000021098	SBDS	99	80.321	Propithecus_coquereli
ENSORLG00000023489	sbds	100	80.723	ENSPVAG00000009369	SBDS	99	80.723	Pteropus_vampyrus
ENSORLG00000023489	sbds	100	92.771	ENSPNYG00000022403	sbds	100	92.771	Pundamilia_nyererei
ENSORLG00000023489	sbds	100	87.149	ENSPNAG00000001120	sbds	99	87.149	Pygocentrus_nattereri
ENSORLG00000023489	sbds	100	81.928	ENSRNOG00000000888	Sbds	99	81.928	Rattus_norvegicus
ENSORLG00000023489	sbds	100	80.321	ENSRBIG00000035557	SBDS	99	80.321	Rhinopithecus_bieti
ENSORLG00000023489	sbds	100	80.321	ENSRROG00000040842	-	99	80.321	Rhinopithecus_roxellana
ENSORLG00000023489	sbds	100	65.863	ENSRROG00000041986	-	99	65.863	Rhinopithecus_roxellana
ENSORLG00000023489	sbds	98	42.400	YLR022C	-	96	41.224	Saccharomyces_cerevisiae
ENSORLG00000023489	sbds	93	78.355	ENSSBOG00000022460	SBDS	99	78.355	Saimiri_boliviensis_boliviensis
ENSORLG00000023489	sbds	100	71.888	ENSSHAG00000010263	SBDS	99	71.888	Sarcophilus_harrisii
ENSORLG00000023489	sbds	100	89.558	ENSSFOG00015001108	sbds	99	89.558	Scleropages_formosus
ENSORLG00000023489	sbds	100	89.960	ENSSMAG00000020506	sbds	100	89.960	Scophthalmus_maximus
ENSORLG00000023489	sbds	100	91.566	ENSSDUG00000001528	sbds	100	91.566	Seriola_dumerili
ENSORLG00000023489	sbds	100	91.165	ENSSLDG00000003659	sbds	100	91.165	Seriola_lalandi_dorsalis
ENSORLG00000023489	sbds	61	85.621	ENSSARG00000013132	-	100	85.621	Sorex_araneus
ENSORLG00000023489	sbds	73	86.047	ENSSARG00000001899	-	73	86.047	Sorex_araneus
ENSORLG00000023489	sbds	100	81.526	ENSSPUG00000002699	SBDS	99	81.526	Sphenodon_punctatus
ENSORLG00000023489	sbds	100	91.968	ENSSPAG00000016419	sbds	100	84.800	Stegastes_partitus
ENSORLG00000023489	sbds	100	80.723	ENSSSCG00000007732	SBDS	99	80.723	Sus_scrofa
ENSORLG00000023489	sbds	66	84.756	ENSTGUG00000003426	SBDS	99	84.756	Taeniopygia_guttata
ENSORLG00000023489	sbds	100	90.763	ENSTRUG00000021443	sbds	100	90.763	Takifugu_rubripes
ENSORLG00000023489	sbds	100	90.763	ENSTNIG00000019000	sbds	100	90.763	Tetraodon_nigroviridis
ENSORLG00000023489	sbds	84	68.750	ENSTBEG00000001178	SBDS	94	70.051	Tupaia_belangeri
ENSORLG00000023489	sbds	100	62.651	ENSTTRG00000003921	SBDS	99	62.651	Tursiops_truncatus
ENSORLG00000023489	sbds	100	80.321	ENSUAMG00000001326	SBDS	99	80.321	Ursus_americanus
ENSORLG00000023489	sbds	100	80.321	ENSUMAG00000015353	SBDS	99	80.321	Ursus_maritimus
ENSORLG00000023489	sbds	100	80.321	ENSVVUG00000016478	SBDS	99	80.321	Vulpes_vulpes
ENSORLG00000023489	sbds	100	84.337	ENSXETG00000010093	sbds	99	84.337	Xenopus_tropicalis
ENSORLG00000023489	sbds	100	79.920	ENSXCOG00000010639	sbds	100	79.920	Xiphophorus_couchianus
ENSORLG00000023489	sbds	100	91.566	ENSXMAG00000006065	sbds	100	91.566	Xiphophorus_maculatus