EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000023538 (Gene tree)
Gene ID: 101166044
Gene Symbol: shq1
Alias: -
Full Name: SHQ1%2C H/ACA ribonucleoprotein assembly factor
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 40831 bases
Position: chr5:21854353-21895183
Accession: 101166044
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000030395	SHQ1	PF04925.15	9.4e-65	1	1
ENSORLP00000030929	SHQ1	PF04925.15	9.4e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000042142	-	5606	-	ENSORLP00000030395	548 (aa)	-	UPI000CE23CD8
ENSORLT00000041339	-	5188	XM_023955092	ENSORLP00000030929	548 (aa)	XP_023810860	UPI000CE23CD8

Gene Model

Click here to download ENSORLG00000023538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000023538's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000023538	shq1	80	58.744	ENSG00000144736	SHQ1	96	68.750	Homo_sapiens
ENSORLG00000023538	shq1	98	65.500	ENSAPOG00000000397	shq1	97	66.497	Acanthochromis_polyacanthus
ENSORLG00000023538	shq1	78	58.124	ENSAMEG00000015140	SHQ1	71	59.611	Ailuropoda_melanoleuca
ENSORLG00000023538	shq1	99	64.657	ENSACIG00000021249	shq1	99	65.829	Amphilophus_citrinellus
ENSORLG00000023538	shq1	99	64.250	ENSAOCG00000023311	shq1	99	64.745	Amphiprion_ocellaris
ENSORLG00000023538	shq1	99	64.950	ENSAPEG00000021686	shq1	99	65.282	Amphiprion_percula
ENSORLG00000023538	shq1	92	69.030	ENSATEG00000008475	shq1	89	69.030	Anabas_testudineus
ENSORLG00000023538	shq1	80	56.376	ENSAPLG00000013926	SHQ1	85	57.968	Anas_platyrhynchos
ENSORLG00000023538	shq1	77	58.140	ENSACAG00000014809	SHQ1	64	59.122	Anolis_carolinensis
ENSORLG00000023538	shq1	84	40.987	ENSANAG00000030500	-	72	42.317	Aotus_nancymaae
ENSORLG00000023538	shq1	85	55.285	ENSANAG00000029241	SHQ1	75	58.796	Aotus_nancymaae
ENSORLG00000023538	shq1	99	64.322	ENSACLG00000023077	shq1	99	62.141	Astatotilapia_calliptera
ENSORLG00000023538	shq1	77	62.353	ENSAMXG00000043822	shq1	74	63.059	Astyanax_mexicanus
ENSORLG00000023538	shq1	80	59.193	ENSBTAG00000005436	SHQ1	74	59.954	Bos_taurus
ENSORLG00000023538	shq1	77	30.137	WBGene00021655	Y48A5A.1	91	30.508	Caenorhabditis_elegans
ENSORLG00000023538	shq1	80	57.848	ENSCJAG00000015131	SHQ1	74	58.565	Callithrix_jacchus
ENSORLG00000023538	shq1	82	57.205	ENSCAFG00000006434	SHQ1	74	59.259	Canis_familiaris
ENSORLG00000023538	shq1	82	57.424	ENSCAFG00020016743	SHQ1	74	59.491	Canis_lupus_dingo
ENSORLG00000023538	shq1	80	58.613	ENSCHIG00000012271	SHQ1	68	60.185	Capra_hircus
ENSORLG00000023538	shq1	74	56.311	ENSTSYG00000014439	SHQ1	75	56.744	Carlito_syrichta
ENSORLG00000023538	shq1	87	46.185	ENSCAPG00000009343	SHQ1	61	63.158	Cavia_aperea
ENSORLG00000023538	shq1	80	58.427	ENSCPOG00000011443	SHQ1	74	59.491	Cavia_porcellus
ENSORLG00000023538	shq1	83	43.226	ENSCCAG00000036087	-	73	44.550	Cebus_capucinus
ENSORLG00000023538	shq1	80	50.000	ENSCCAG00000027080	SHQ1	73	50.463	Cebus_capucinus
ENSORLG00000023538	shq1	80	59.417	ENSCATG00000041238	SHQ1	74	59.954	Cercocebus_atys
ENSORLG00000023538	shq1	80	58.166	ENSCLAG00000004206	SHQ1	75	60.277	Chinchilla_lanigera
ENSORLG00000023538	shq1	58	58.589	ENSCSAG00000011514	SHQ1	70	58.309	Chlorocebus_sabaeus
ENSORLG00000023538	shq1	51	66.667	ENSCHOG00000003273	-	84	66.667	Choloepus_hoffmanni
ENSORLG00000023538	shq1	80	59.375	ENSCPBG00000006441	SHQ1	70	60.046	Chrysemys_picta_bellii
ENSORLG00000023538	shq1	71	40.863	ENSCING00000008013	-	85	40.863	Ciona_intestinalis
ENSORLG00000023538	shq1	71	40.256	ENSCSAVG00000002332	-	97	39.720	Ciona_savignyi
ENSORLG00000023538	shq1	80	59.865	ENSCANG00000039295	SHQ1	75	60.417	Colobus_angolensis_palliatus
ENSORLG00000023538	shq1	78	60.321	ENSCGRG00001012583	Shq1	76	60.185	Cricetulus_griseus_chok1gshd
ENSORLG00000023538	shq1	78	60.321	ENSCGRG00000009849	Shq1	76	60.185	Cricetulus_griseus_crigri
ENSORLG00000023538	shq1	75	75.854	ENSCSEG00000007829	shq1	88	66.300	Cynoglossus_semilaevis
ENSORLG00000023538	shq1	97	66.549	ENSCVAG00000020049	shq1	97	67.782	Cyprinodon_variegatus
ENSORLG00000023538	shq1	78	67.209	ENSDARG00000058522	shq1	72	67.529	Danio_rerio
ENSORLG00000023538	shq1	78	59.174	ENSDNOG00000033937	SHQ1	75	59.491	Dasypus_novemcinctus
ENSORLG00000023538	shq1	80	51.345	ENSETEG00000005766	SHQ1	75	51.852	Echinops_telfairi
ENSORLG00000023538	shq1	65	47.425	ENSEBUG00000005445	shq1	73	49.689	Eptatretus_burgeri
ENSORLG00000023538	shq1	80	57.942	ENSEASG00005002237	SHQ1	87	54.455	Equus_asinus_asinus
ENSORLG00000023538	shq1	80	58.389	ENSECAG00000015673	SHQ1	85	55.090	Equus_caballus
ENSORLG00000023538	shq1	80	59.865	ENSEEUG00000010568	SHQ1	75	60.417	Erinaceus_europaeus
ENSORLG00000023538	shq1	74	71.990	ENSELUG00000003476	shq1	81	68.158	Esox_lucius
ENSORLG00000023538	shq1	74	59.277	ENSFCAG00000012781	SHQ1	75	59.259	Felis_catus
ENSORLG00000023538	shq1	75	61.337	ENSFALG00000013428	SHQ1	70	61.432	Ficedula_albicollis
ENSORLG00000023538	shq1	80	58.520	ENSFDAG00000005595	SHQ1	66	59.491	Fukomys_damarensis
ENSORLG00000023538	shq1	96	67.800	ENSFHEG00000017552	shq1	99	66.263	Fundulus_heteroclitus
ENSORLG00000023538	shq1	71	74.227	ENSGMOG00000007350	shq1	100	74.227	Gadus_morhua
ENSORLG00000023538	shq1	80	59.101	ENSGALG00000007798	SHQ1	70	59.954	Gallus_gallus
ENSORLG00000023538	shq1	71	77.577	ENSGACG00000011797	shq1	100	77.577	Gasterosteus_aculeatus
ENSORLG00000023538	shq1	80	58.520	ENSGGOG00000034818	SHQ1	74	59.259	Gorilla_gorilla
ENSORLG00000023538	shq1	99	64.430	ENSHBUG00000010857	shq1	99	65.101	Haplochromis_burtoni
ENSORLG00000023538	shq1	74	58.554	ENSHGLG00000003637	SHQ1	67	58.891	Heterocephalus_glaber_female
ENSORLG00000023538	shq1	74	58.554	ENSHGLG00100011957	SHQ1	67	58.891	Heterocephalus_glaber_male
ENSORLG00000023538	shq1	95	65.054	ENSHCOG00000010799	shq1	95	64.695	Hippocampus_comes
ENSORLG00000023538	shq1	78	65.972	ENSIPUG00000001247	shq1	74	66.276	Ictalurus_punctatus
ENSORLG00000023538	shq1	79	57.466	ENSSTOG00000010043	SHQ1	79	57.870	Ictidomys_tridecemlineatus
ENSORLG00000023538	shq1	78	59.039	ENSJJAG00000017611	Shq1	76	59.122	Jaculus_jaculus
ENSORLG00000023538	shq1	92	70.802	ENSKMAG00000004457	shq1	95	68.829	Kryptolebias_marmoratus
ENSORLG00000023538	shq1	78	62.329	ENSLACG00000014243	SHQ1	65	62.500	Latimeria_chalumnae
ENSORLG00000023538	shq1	79	67.338	ENSLOCG00000009970	shq1	75	67.277	Lepisosteus_oculatus
ENSORLG00000023538	shq1	80	42.022	ENSMFAG00000037396	-	72	42.191	Macaca_fascicularis
ENSORLG00000023538	shq1	80	59.193	ENSMFAG00000039148	SHQ1	74	59.954	Macaca_fascicularis
ENSORLG00000023538	shq1	65	58.856	ENSMMUG00000009571	SHQ1	69	58.854	Macaca_mulatta
ENSORLG00000023538	shq1	80	42.022	ENSMMUG00000021761	-	72	42.191	Macaca_mulatta
ENSORLG00000023538	shq1	80	59.193	ENSMNEG00000032667	SHQ1	74	59.954	Macaca_nemestrina
ENSORLG00000023538	shq1	74	59.759	ENSMLEG00000038493	SHQ1	74	59.491	Mandrillus_leucophaeus
ENSORLG00000023538	shq1	99	62.662	ENSMAMG00000023432	shq1	95	62.500	Mastacembelus_armatus
ENSORLG00000023538	shq1	99	64.597	ENSMZEG00005008649	shq1	99	65.268	Maylandia_zebra
ENSORLG00000023538	shq1	80	59.193	ENSMGAG00000009640	SHQ1	71	60.046	Meleagris_gallopavo
ENSORLG00000023538	shq1	78	60.092	ENSMAUG00000022030	Shq1	76	59.954	Mesocricetus_auratus
ENSORLG00000023538	shq1	82	55.437	ENSMICG00000009224	SHQ1	74	57.870	Microcebus_murinus
ENSORLG00000023538	shq1	80	58.202	ENSMOCG00000017836	Shq1	76	59.028	Microtus_ochrogaster
ENSORLG00000023538	shq1	93	65.619	ENSMMOG00000010569	shq1	92	65.804	Mola_mola
ENSORLG00000023538	shq1	78	57.078	ENSMODG00000003926	SHQ1	78	57.143	Monodelphis_domestica
ENSORLG00000023538	shq1	97	66.372	ENSMALG00000008870	shq1	94	66.726	Monopterus_albus
ENSORLG00000023538	shq1	81	57.743	MGP_CAROLIEiJ_G0028689	Shq1	76	59.954	Mus_caroli
ENSORLG00000023538	shq1	78	59.725	ENSMUSG00000035378	Shq1	76	60.417	Mus_musculus
ENSORLG00000023538	shq1	80	58.482	MGP_PahariEiJ_G0022440	Shq1	76	60.185	Mus_pahari
ENSORLG00000023538	shq1	83	57.511	MGP_SPRETEiJ_G0029717	Shq1	76	60.417	Mus_spretus
ENSORLG00000023538	shq1	82	57.424	ENSMPUG00000017006	SHQ1	73	58.796	Mustela_putorius_furo
ENSORLG00000023538	shq1	86	49.038	ENSMLUG00000013539	SHQ1	73	56.995	Myotis_lucifugus
ENSORLG00000023538	shq1	92	47.582	ENSNGAG00000023317	Shq1	75	52.482	Nannospalax_galili
ENSORLG00000023538	shq1	82	60.990	ENSNBRG00000024004	shq1	98	61.980	Neolamprologus_brichardi
ENSORLG00000023538	shq1	85	55.870	ENSNLEG00000002731	SHQ1	74	59.491	Nomascus_leucogenys
ENSORLG00000023538	shq1	68	55.556	ENSMEUG00000009350	-	70	55.556	Notamacropus_eugenii
ENSORLG00000023538	shq1	80	57.753	ENSODEG00000009192	SHQ1	79	58.796	Octodon_degus
ENSORLG00000023538	shq1	99	64.489	ENSONIG00000020264	shq1	99	65.327	Oreochromis_niloticus
ENSORLG00000023538	shq1	74	59.615	ENSOCUG00000016695	SHQ1	74	60.046	Oryctolagus_cuniculus
ENSORLG00000023538	shq1	100	96.926	ENSORLG00020003697	shq1	100	96.926	Oryzias_latipes_hni
ENSORLG00000023538	shq1	100	96.898	ENSORLG00015021040	shq1	100	96.898	Oryzias_latipes_hsok
ENSORLG00000023538	shq1	99	88.829	ENSOMEG00000001225	shq1	100	87.568	Oryzias_melastigma
ENSORLG00000023538	shq1	84	55.509	ENSOGAG00000003898	SHQ1	76	58.716	Otolemur_garnettii
ENSORLG00000023538	shq1	80	58.444	ENSOARG00000009547	SHQ1	75	59.174	Ovis_aries
ENSORLG00000023538	shq1	85	41.463	ENSPPAG00000043263	-	72	42.791	Pan_paniscus
ENSORLG00000023538	shq1	80	58.969	ENSPPAG00000027714	SHQ1	74	59.722	Pan_paniscus
ENSORLG00000023538	shq1	74	59.277	ENSPPRG00000004769	SHQ1	75	59.259	Panthera_pardus
ENSORLG00000023538	shq1	74	56.098	ENSPTIG00000011478	SHQ1	74	56.206	Panthera_tigris_altaica
ENSORLG00000023538	shq1	85	41.176	ENSPTRG00000048303	-	72	42.459	Pan_troglodytes
ENSORLG00000023538	shq1	80	58.969	ENSPTRG00000015106	SHQ1	74	59.722	Pan_troglodytes
ENSORLG00000023538	shq1	80	58.296	ENSPANG00000002881	SHQ1	74	59.954	Papio_anubis
ENSORLG00000023538	shq1	77	68.409	ENSPKIG00000021517	shq1	72	68.382	Paramormyrops_kingsleyae
ENSORLG00000023538	shq1	80	58.036	ENSPSIG00000005536	SHQ1	71	58.891	Pelodiscus_sinensis
ENSORLG00000023538	shq1	97	58.947	ENSPMGG00000008838	shq1	97	59.123	Periophthalmus_magnuspinnatus
ENSORLG00000023538	shq1	71	59.799	ENSPEMG00000000251	Shq1	76	59.028	Peromyscus_maniculatus_bairdii
ENSORLG00000023538	shq1	79	56.009	ENSPMAG00000005372	shq1	94	57.933	Petromyzon_marinus
ENSORLG00000023538	shq1	94	69.129	ENSPFOG00000003118	shq1	97	70.455	Poecilia_formosa
ENSORLG00000023538	shq1	79	66.667	ENSPMEG00000011076	shq1	98	67.865	Poecilia_mexicana
ENSORLG00000023538	shq1	86	68.058	ENSPREG00000000591	shq1	92	68.476	Poecilia_reticulata
ENSORLG00000023538	shq1	80	58.969	ENSPPYG00000013717	SHQ1	74	59.908	Pongo_abelii
ENSORLG00000023538	shq1	75	59.330	ENSPCAG00000009035	SHQ1	75	59.491	Procavia_capensis
ENSORLG00000023538	shq1	80	56.473	ENSPCOG00000008415	SHQ1	74	58.756	Propithecus_coquereli
ENSORLG00000023538	shq1	74	57.692	ENSPVAG00000017392	SHQ1	75	59.353	Pteropus_vampyrus
ENSORLG00000023538	shq1	99	64.322	ENSPNYG00000003878	shq1	99	65.159	Pundamilia_nyererei
ENSORLG00000023538	shq1	77	67.916	ENSPNAG00000026840	shq1	70	68.618	Pygocentrus_nattereri
ENSORLG00000023538	shq1	80	58.072	ENSRNOG00000005433	Shq1	71	59.954	Rattus_norvegicus
ENSORLG00000023538	shq1	74	58.435	ENSRBIG00000026280	SHQ1	74	58.451	Rhinopithecus_bieti
ENSORLG00000023538	shq1	74	61.205	ENSRROG00000034126	SHQ1	75	60.880	Rhinopithecus_roxellana
ENSORLG00000023538	shq1	80	52.242	ENSSBOG00000021038	SHQ1	73	52.778	Saimiri_boliviensis_boliviensis
ENSORLG00000023538	shq1	78	58.542	ENSSHAG00000015077	SHQ1	77	58.447	Sarcophilus_harrisii
ENSORLG00000023538	shq1	80	70.387	ENSSFOG00015016241	shq1	74	71.921	Scleropages_formosus
ENSORLG00000023538	shq1	92	70.412	ENSSMAG00000016151	shq1	88	70.037	Scophthalmus_maximus
ENSORLG00000023538	shq1	99	64.803	ENSSDUG00000011986	shq1	99	65.625	Seriola_dumerili
ENSORLG00000023538	shq1	99	65.066	ENSSLDG00000013908	shq1	99	65.728	Seriola_lalandi_dorsalis
ENSORLG00000023538	shq1	61	56.891	ENSSARG00000007119	SHQ1	60	56.891	Sorex_araneus
ENSORLG00000023538	shq1	64	56.267	ENSSPUG00000011526	-	61	57.187	Sphenodon_punctatus
ENSORLG00000023538	shq1	83	55.010	ENSSSCG00000011518	SHQ1	74	60.046	Sus_scrofa
ENSORLG00000023538	shq1	74	61.005	ENSTGUG00000009933	SHQ1	75	60.690	Taeniopygia_guttata
ENSORLG00000023538	shq1	97	61.391	ENSTRUG00000009446	shq1	97	61.606	Takifugu_rubripes
ENSORLG00000023538	shq1	74	70.433	ENSTNIG00000007354	shq1	94	70.413	Tetraodon_nigroviridis
ENSORLG00000023538	shq1	58	68.085	ENSTBEG00000011295	SHQ1	52	68.085	Tupaia_belangeri
ENSORLG00000023538	shq1	79	58.239	ENSTTRG00000005320	SHQ1	75	58.565	Tursiops_truncatus
ENSORLG00000023538	shq1	82	55.902	ENSUMAG00000024031	SHQ1	74	58.865	Ursus_maritimus
ENSORLG00000023538	shq1	55	58.654	ENSVPAG00000004880	SHQ1	72	52.344	Vicugna_pacos
ENSORLG00000023538	shq1	82	57.205	ENSVVUG00000013906	SHQ1	74	59.259	Vulpes_vulpes
ENSORLG00000023538	shq1	80	57.823	ENSXETG00000032215	shq1	67	58.637	Xenopus_tropicalis