EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000023951 (Gene tree)
Gene ID: 101175386
Gene Symbol: lsm7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 3316 bases
Position: chr4:8272503-8275818
Accession: 101175386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000027417	LSM	PF01423.22	1.1e-20	1	1
ENSORLP00000043390	LSM	PF01423.22	1.7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000039555	-	1589	-	ENSORLP00000043390	124 (aa)	-	-
ENSORLT00000040655	-	1290	XM_004067712	ENSORLP00000027417	103 (aa)	XP_004067760	UPI0002A4B1A0

Gene Model

Click here to download ENSORLG00000023951's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03018	RNA degradation	KEGG
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000023951's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000023951	lsm7	69	38.028	ENSORLG00000025456	snrpg	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000023951	lsm7	100	95.146	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSORLG00000023951	lsm7	91	100.000	ENSAPOG00000015573	lsm7	81	100.000	Acanthochromis_polyacanthus
ENSORLG00000023951	lsm7	100	92.233	ENSAMEG00000005484	LSM7	100	94.175	Ailuropoda_melanoleuca
ENSORLG00000023951	lsm7	95	98.980	ENSACIG00000006498	lsm7	78	98.980	Amphilophus_citrinellus
ENSORLG00000023951	lsm7	99	99.020	ENSAOCG00000001077	lsm7	93	99.020	Amphiprion_ocellaris
ENSORLG00000023951	lsm7	100	100.000	ENSAPEG00000000694	lsm7	100	100.000	Amphiprion_percula
ENSORLG00000023951	lsm7	100	98.058	ENSAPEG00000024447	lsm7	93	99.020	Amphiprion_percula
ENSORLG00000023951	lsm7	100	100.000	ENSATEG00000008557	lsm7	100	100.000	Anabas_testudineus
ENSORLG00000023951	lsm7	100	86.408	ENSANAG00000022222	-	100	86.408	Aotus_nancymaae
ENSORLG00000023951	lsm7	100	95.146	ENSANAG00000037196	-	100	95.146	Aotus_nancymaae
ENSORLG00000023951	lsm7	100	99.029	ENSACLG00000021021	lsm7	100	99.029	Astatotilapia_calliptera
ENSORLG00000023951	lsm7	100	98.058	ENSAMXG00000037622	lsm7	100	98.058	Astyanax_mexicanus
ENSORLG00000023951	lsm7	100	95.146	ENSBTAG00000004521	LSM7	100	95.146	Bos_taurus
ENSORLG00000023951	lsm7	97	58.000	WBGene00003081	lsm-7	97	57.426	Caenorhabditis_elegans
ENSORLG00000023951	lsm7	69	77.465	ENSCJAG00000039713	-	87	77.465	Callithrix_jacchus
ENSORLG00000023951	lsm7	98	94.059	ENSCAFG00000019409	LSM7	99	94.118	Canis_familiaris
ENSORLG00000023951	lsm7	98	94.059	ENSCAFG00020018168	LSM7	74	95.000	Canis_lupus_dingo
ENSORLG00000023951	lsm7	100	93.204	ENSCHIG00000023663	LSM7	100	95.146	Capra_hircus
ENSORLG00000023951	lsm7	69	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSORLG00000023951	lsm7	100	95.146	ENSCPOG00000014025	LSM7	100	95.146	Cavia_porcellus
ENSORLG00000023951	lsm7	98	95.050	ENSCCAG00000035456	LSM7	99	95.050	Cebus_capucinus
ENSORLG00000023951	lsm7	100	95.146	ENSCATG00000023543	LSM7	100	95.146	Cercocebus_atys
ENSORLG00000023951	lsm7	100	95.146	ENSCLAG00000011635	LSM7	100	95.146	Chinchilla_lanigera
ENSORLG00000023951	lsm7	100	95.146	ENSCSAG00000011599	LSM7	100	95.146	Chlorocebus_sabaeus
ENSORLG00000023951	lsm7	70	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSORLG00000023951	lsm7	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSORLG00000023951	lsm7	100	95.146	ENSCANG00000035525	LSM7	100	95.146	Colobus_angolensis_palliatus
ENSORLG00000023951	lsm7	87	84.444	ENSCGRG00001016005	-	92	84.444	Cricetulus_griseus_chok1gshd
ENSORLG00000023951	lsm7	100	94.175	ENSCGRG00001000807	-	100	94.175	Cricetulus_griseus_chok1gshd
ENSORLG00000023951	lsm7	98	94.059	ENSCGRG00000014355	-	98	94.118	Cricetulus_griseus_crigri
ENSORLG00000023951	lsm7	87	84.444	ENSCGRG00000006821	-	92	84.444	Cricetulus_griseus_crigri
ENSORLG00000023951	lsm7	98	100.000	ENSCSEG00000014900	lsm7	86	100.000	Cynoglossus_semilaevis
ENSORLG00000023951	lsm7	98	99.010	ENSCVAG00000021091	lsm7	94	99.010	Cyprinodon_variegatus
ENSORLG00000023951	lsm7	100	97.087	ENSDARG00000058328	lsm7	100	97.087	Danio_rerio
ENSORLG00000023951	lsm7	99	93.137	ENSDORG00000024460	Lsm7	100	93.137	Dipodomys_ordii
ENSORLG00000023951	lsm7	94	73.469	FBgn0261068	LSm7	89	73.469	Drosophila_melanogaster
ENSORLG00000023951	lsm7	98	92.079	ENSETEG00000012788	LSM7	100	92.157	Echinops_telfairi
ENSORLG00000023951	lsm7	100	83.495	ENSEBUG00000016992	lsm7	99	83.495	Eptatretus_burgeri
ENSORLG00000023951	lsm7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSORLG00000023951	lsm7	100	91.262	ENSECAG00000001440	LSM7	66	91.262	Equus_caballus
ENSORLG00000023951	lsm7	100	94.175	ENSFCAG00000003445	LSM7	100	94.175	Felis_catus
ENSORLG00000023951	lsm7	98	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSORLG00000023951	lsm7	93	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSORLG00000023951	lsm7	98	99.010	ENSFHEG00000006349	lsm7	90	99.010	Fundulus_heteroclitus
ENSORLG00000023951	lsm7	100	96.117	ENSGMOG00000013320	lsm7	100	98.058	Gadus_morhua
ENSORLG00000023951	lsm7	100	99.029	ENSGAFG00000013902	lsm7	100	99.029	Gambusia_affinis
ENSORLG00000023951	lsm7	100	97.087	ENSGACG00000010390	lsm7	100	98.058	Gasterosteus_aculeatus
ENSORLG00000023951	lsm7	100	95.146	ENSGGOG00000010172	LSM7	100	95.146	Gorilla_gorilla
ENSORLG00000023951	lsm7	100	99.029	ENSHBUG00000004616	lsm7	100	99.029	Haplochromis_burtoni
ENSORLG00000023951	lsm7	100	95.146	ENSHGLG00000010587	LSM7	100	95.146	Heterocephalus_glaber_female
ENSORLG00000023951	lsm7	100	95.146	ENSHGLG00100000852	LSM7	100	95.146	Heterocephalus_glaber_male
ENSORLG00000023951	lsm7	98	99.010	ENSHCOG00000020252	lsm7	100	99.010	Hippocampus_comes
ENSORLG00000023951	lsm7	100	96.117	ENSIPUG00000024724	lsm7	100	96.117	Ictalurus_punctatus
ENSORLG00000023951	lsm7	98	95.050	ENSSTOG00000028372	LSM7	99	95.050	Ictidomys_tridecemlineatus
ENSORLG00000023951	lsm7	97	95.000	ENSJJAG00000001936	Lsm7	97	95.000	Jaculus_jaculus
ENSORLG00000023951	lsm7	100	99.029	ENSKMAG00000022151	lsm7	100	99.029	Kryptolebias_marmoratus
ENSORLG00000023951	lsm7	100	99.029	ENSLBEG00000005203	lsm7	100	99.029	Labrus_bergylta
ENSORLG00000023951	lsm7	90	95.699	ENSLACG00000015700	LSM7	100	95.146	Latimeria_chalumnae
ENSORLG00000023951	lsm7	98	97.030	ENSLOCG00000004356	lsm7	100	96.117	Lepisosteus_oculatus
ENSORLG00000023951	lsm7	98	95.050	ENSLAFG00000029302	LSM7	99	95.098	Loxodonta_africana
ENSORLG00000023951	lsm7	100	95.146	ENSMFAG00000044572	LSM7	100	95.146	Macaca_fascicularis
ENSORLG00000023951	lsm7	100	95.146	ENSMMUG00000000452	LSM7	100	95.146	Macaca_mulatta
ENSORLG00000023951	lsm7	100	95.146	ENSMNEG00000004393	LSM7	100	95.146	Macaca_nemestrina
ENSORLG00000023951	lsm7	100	95.146	ENSMLEG00000030852	LSM7	100	95.146	Mandrillus_leucophaeus
ENSORLG00000023951	lsm7	100	99.029	ENSMAMG00000005410	lsm7	100	99.029	Mastacembelus_armatus
ENSORLG00000023951	lsm7	100	99.029	ENSMZEG00005028055	lsm7	100	99.029	Maylandia_zebra
ENSORLG00000023951	lsm7	100	97.087	ENSMGAG00000000750	LSM7	89	97.087	Meleagris_gallopavo
ENSORLG00000023951	lsm7	100	94.175	ENSMAUG00000009276	Lsm7	100	94.175	Mesocricetus_auratus
ENSORLG00000023951	lsm7	100	95.146	ENSMICG00000028619	-	100	95.146	Microcebus_murinus
ENSORLG00000023951	lsm7	100	94.175	ENSMICG00000009988	-	100	94.175	Microcebus_murinus
ENSORLG00000023951	lsm7	100	94.175	ENSMOCG00000016925	Lsm7	100	94.175	Microtus_ochrogaster
ENSORLG00000023951	lsm7	100	100.000	ENSMMOG00000019645	lsm7	98	100.000	Mola_mola
ENSORLG00000023951	lsm7	100	96.117	ENSMODG00000004722	LSM7	100	96.117	Monodelphis_domestica
ENSORLG00000023951	lsm7	100	99.029	ENSMALG00000014511	lsm7	79	99.029	Monopterus_albus
ENSORLG00000023951	lsm7	99	94.118	MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	Mus_caroli
ENSORLG00000023951	lsm7	99	94.118	ENSMUSG00000035215	Lsm7	99	94.118	Mus_musculus
ENSORLG00000023951	lsm7	99	94.118	MGP_PahariEiJ_G0031020	Lsm7	99	94.118	Mus_pahari
ENSORLG00000023951	lsm7	99	94.118	MGP_SPRETEiJ_G0016425	Lsm7	99	94.118	Mus_spretus
ENSORLG00000023951	lsm7	100	92.233	ENSMLUG00000013097	-	100	94.175	Myotis_lucifugus
ENSORLG00000023951	lsm7	99	89.216	ENSMLUG00000024002	-	94	89.216	Myotis_lucifugus
ENSORLG00000023951	lsm7	100	93.204	ENSNGAG00000021637	Lsm7	100	93.204	Nannospalax_galili
ENSORLG00000023951	lsm7	98	99.010	ENSNBRG00000015770	lsm7	91	97.143	Neolamprologus_brichardi
ENSORLG00000023951	lsm7	100	97.087	ENSNBRG00000001237	-	93	88.793	Neolamprologus_brichardi
ENSORLG00000023951	lsm7	100	95.146	ENSNLEG00000002265	LSM7	100	95.146	Nomascus_leucogenys
ENSORLG00000023951	lsm7	100	95.146	ENSODEG00000013590	-	100	95.146	Octodon_degus
ENSORLG00000023951	lsm7	100	88.350	ENSODEG00000018769	-	100	88.350	Octodon_degus
ENSORLG00000023951	lsm7	100	75.728	ENSODEG00000008190	-	100	75.728	Octodon_degus
ENSORLG00000023951	lsm7	100	99.029	ENSONIG00000001801	lsm7	100	90.517	Oreochromis_niloticus
ENSORLG00000023951	lsm7	100	100.000	ENSORLG00020022226	lsm7	100	100.000	Oryzias_latipes_hni
ENSORLG00000023951	lsm7	100	98.058	ENSORLG00015020044	lsm7	99	96.296	Oryzias_latipes_hsok
ENSORLG00000023951	lsm7	100	100.000	ENSOMEG00000012806	lsm7	100	100.000	Oryzias_melastigma
ENSORLG00000023951	lsm7	100	83.495	ENSOGAG00000024373	-	100	83.495	Otolemur_garnettii
ENSORLG00000023951	lsm7	98	93.069	ENSOGAG00000000144	-	100	93.137	Otolemur_garnettii
ENSORLG00000023951	lsm7	100	93.204	ENSOARG00000014013	LSM7	100	95.146	Ovis_aries
ENSORLG00000023951	lsm7	100	95.146	ENSPPAG00000026500	LSM7	100	95.146	Pan_paniscus
ENSORLG00000023951	lsm7	100	94.175	ENSPPRG00000008624	LSM7	100	94.175	Panthera_pardus
ENSORLG00000023951	lsm7	98	94.059	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSORLG00000023951	lsm7	100	95.146	ENSPTRG00000010233	LSM7	100	95.146	Pan_troglodytes
ENSORLG00000023951	lsm7	100	95.146	ENSPANG00000020668	LSM7	100	95.146	Papio_anubis
ENSORLG00000023951	lsm7	100	98.058	ENSPKIG00000011325	lsm7	100	98.058	Paramormyrops_kingsleyae
ENSORLG00000023951	lsm7	98	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSORLG00000023951	lsm7	100	100.000	ENSPMGG00000006498	lsm7	100	100.000	Periophthalmus_magnuspinnatus
ENSORLG00000023951	lsm7	100	96.117	ENSPCIG00000030454	LSM7	100	96.117	Phascolarctos_cinereus
ENSORLG00000023951	lsm7	100	96.117	ENSPFOG00000012467	lsm7	91	98.058	Poecilia_formosa
ENSORLG00000023951	lsm7	100	96.117	ENSPLAG00000000252	lsm7	94	98.020	Poecilia_latipinna
ENSORLG00000023951	lsm7	100	96.117	ENSPMEG00000000587	lsm7	94	98.020	Poecilia_mexicana
ENSORLG00000023951	lsm7	78	77.778	ENSPREG00000016718	lsm7	65	77.778	Poecilia_reticulata
ENSORLG00000023951	lsm7	71	94.521	ENSPPYG00000009348	-	81	65.574	Pongo_abelii
ENSORLG00000023951	lsm7	100	95.146	ENSPCOG00000017177	LSM7	100	95.146	Propithecus_coquereli
ENSORLG00000023951	lsm7	100	99.029	ENSPNYG00000006938	lsm7	100	99.029	Pundamilia_nyererei
ENSORLG00000023951	lsm7	100	98.058	ENSPNAG00000010141	lsm7	100	98.058	Pygocentrus_nattereri
ENSORLG00000023951	lsm7	99	95.098	ENSRNOG00000019552	Lsm7	99	95.098	Rattus_norvegicus
ENSORLG00000023951	lsm7	100	95.146	ENSRBIG00000035978	LSM7	100	95.146	Rhinopithecus_bieti
ENSORLG00000023951	lsm7	100	95.146	ENSRROG00000034044	LSM7	100	95.146	Rhinopithecus_roxellana
ENSORLG00000023951	lsm7	83	48.315	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSORLG00000023951	lsm7	100	95.146	ENSSBOG00000034899	LSM7	100	95.146	Saimiri_boliviensis_boliviensis
ENSORLG00000023951	lsm7	100	96.117	ENSSFOG00015006728	lsm7	100	96.117	Scleropages_formosus
ENSORLG00000023951	lsm7	100	98.058	ENSSMAG00000004195	lsm7	95	98.077	Scophthalmus_maximus
ENSORLG00000023951	lsm7	100	100.000	ENSSDUG00000001863	lsm7	100	100.000	Seriola_dumerili
ENSORLG00000023951	lsm7	100	100.000	ENSSLDG00000016339	lsm7	100	100.000	Seriola_lalandi_dorsalis
ENSORLG00000023951	lsm7	100	100.000	ENSSPAG00000015221	lsm7	100	100.000	Stegastes_partitus
ENSORLG00000023951	lsm7	98	95.050	ENSSSCG00000013463	LSM7	99	95.050	Sus_scrofa
ENSORLG00000023951	lsm7	98	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSORLG00000023951	lsm7	100	98.058	ENSTRUG00000022913	lsm7	100	98.058	Takifugu_rubripes
ENSORLG00000023951	lsm7	100	98.058	ENSTNIG00000015525	lsm7	100	98.058	Tetraodon_nigroviridis
ENSORLG00000023951	lsm7	68	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSORLG00000023951	lsm7	100	92.233	ENSUAMG00000000912	LSM7	88	92.381	Ursus_americanus
ENSORLG00000023951	lsm7	98	94.059	ENSUMAG00000006556	LSM7	79	94.059	Ursus_maritimus
ENSORLG00000023951	lsm7	69	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSORLG00000023951	lsm7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSORLG00000023951	lsm7	99	98.039	ENSXCOG00000002572	lsm7	100	98.039	Xiphophorus_couchianus
ENSORLG00000023951	lsm7	100	99.029	ENSXMAG00000018630	lsm7	100	99.029	Xiphophorus_maculatus