EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000025395 (Gene tree)
Gene ID: 101156603
Gene Symbol: -
Alias: -
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 17118 bases
Position: chr16:18746302-18763419
Accession: 101156603
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000040374	MMR_HSR1	PF01926.23	4.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000012550	-	666	-	ENSORLP00000012549	221 (aa)	-	H2M2A9
ENSORLT00000032751	-	4196	XM_004077906	ENSORLP00000040374	200 (aa)	XP_004077954	UPI0002A49564
ENSORLT00000030270	-	3802	-	ENSORLP00000033338	242 (aa)	-	-

Gene Model

Click here to download ENSORLG00000025395's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000025395's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000025395	-	98	37.313	ENSORLG00000001351	-	97	37.313
ENSORLG00000025395	-	77	42.857	ENSORLG00000030642	zgc:101559	69	42.857
ENSORLG00000025395	-	81	32.370	ENSORLG00000026940	rasl11a	68	32.370
ENSORLG00000025395	-	97	39.423	ENSORLG00000029921	-	97	39.423
ENSORLG00000025395	-	96	33.679	ENSORLG00000025519	rras	97	33.679
ENSORLG00000025395	-	87	46.821	ENSORLG00000013938	rab11bb	79	46.821
ENSORLG00000025395	-	90	56.425	ENSORLG00000021846	-	87	56.425
ENSORLG00000025395	-	86	42.775	ENSORLG00000022335	rab42a	79	42.775
ENSORLG00000025395	-	81	35.185	ENSORLG00000024443	zgc:55558	86	35.185
ENSORLG00000025395	-	73	42.568	ENSORLG00000030109	rab33ba	63	42.568
ENSORLG00000025395	-	95	40.104	ENSORLG00000012261	rab5aa	89	40.104
ENSORLG00000025395	-	97	37.561	ENSORLG00000012158	rab25a	95	37.561
ENSORLG00000025395	-	86	45.087	ENSORLG00000001850	RAB39B	81	45.087
ENSORLG00000025395	-	88	53.143	ENSORLG00000010846	rab15	82	53.143
ENSORLG00000025395	-	85	44.186	ENSORLG00000008345	-	81	44.186
ENSORLG00000025395	-	78	35.032	ENSORLG00000003681	rheb	85	35.032
ENSORLG00000025395	-	78	30.435	ENSORLG00000001134	dnajc27	59	30.435
ENSORLG00000025395	-	86	50.000	ENSORLG00000003902	rab12	71	50.000
ENSORLG00000025395	-	84	42.012	ENSORLG00000014099	si:dkey-34d22.5	77	42.012
ENSORLG00000025395	-	94	42.328	ENSORLG00000024558	-	75	45.455
ENSORLG00000025395	-	88	47.727	ENSORLG00000016555	rab3db	83	47.727
ENSORLG00000025395	-	87	46.821	ENSORLG00000018331	RAB11A	80	46.821
ENSORLG00000025395	-	89	46.328	ENSORLG00000029812	rab30	87	46.328
ENSORLG00000025395	-	79	43.030	ENSORLG00000000937	-	77	43.030
ENSORLG00000025395	-	87	37.778	ENSORLG00000027892	RAB29	88	37.778
ENSORLG00000025395	-	85	36.842	ENSORLG00000018119	si:ch73-116o1.2	81	36.842
ENSORLG00000025395	-	99	46.040	ENSORLG00000028885	rab35b	100	46.040
ENSORLG00000025395	-	95	43.229	ENSORLG00000009609	rab18b	93	43.229
ENSORLG00000025395	-	97	43.842	ENSORLG00000016126	rab11al	94	43.842
ENSORLG00000025395	-	61	30.303	ENSORLG00000010647	arfrp1	65	30.303
ENSORLG00000025395	-	94	41.053	ENSORLG00000026197	rab6a	91	41.053
ENSORLG00000025395	-	90	44.751	ENSORLG00000004624	rab18a	88	44.751
ENSORLG00000025395	-	69	30.435	ENSORLG00000010952	arl3	75	30.435
ENSORLG00000025395	-	91	46.154	ENSORLG00000001098	si:dkey-16l2.16	86	46.154
ENSORLG00000025395	-	96	33.854	ENSORLG00000018912	hrasb	98	33.854
ENSORLG00000025395	-	97	38.942	ENSORLG00000007406	rab14	96	38.942
ENSORLG00000025395	-	87	46.821	ENSORLG00000015284	-	57	46.821
ENSORLG00000025395	-	86	54.386	ENSORLG00000024116	RAB15	82	54.386
ENSORLG00000025395	-	87	40.805	ENSORLG00000016135	rab25b	88	40.116
ENSORLG00000025395	-	81	40.994	ENSORLG00000003882	rab5c	89	36.598
ENSORLG00000025395	-	94	39.796	ENSORLG00000030566	rab33a	59	43.293
ENSORLG00000025395	-	89	56.180	ENSORLG00000000602	zgc:171927	84	56.180
ENSORLG00000025395	-	79	40.000	ENSORLG00000004394	rab34a	60	40.000
ENSORLG00000025395	-	84	47.619	ENSORLG00000013432	rab2a	79	47.619
ENSORLG00000025395	-	89	31.285	ENSORLG00000001566	rhebl1	95	31.285
ENSORLG00000025395	-	87	43.103	ENSORLG00000016290	rab6bb	91	42.778
ENSORLG00000025395	-	82	36.585	ENSORLG00000024102	kras	98	34.715
ENSORLG00000025395	-	88	36.723	ENSORLG00000010115	rab23	90	36.508
ENSORLG00000025395	-	96	33.673	ENSORLG00000025098	si:dkey-13a21.4	96	33.673
ENSORLG00000025395	-	88	33.333	ENSORLG00000009874	rabl2	77	33.333
ENSORLG00000025395	-	79	38.125	ENSORLG00000003119	rab34b	59	38.125
ENSORLG00000025395	-	79	44.937	ENSORLG00000027669	RAB41	75	44.937
ENSORLG00000025395	-	98	54.229	ENSORLG00000028104	rab1ab	98	54.229
ENSORLG00000025395	-	92	43.523	ENSORLG00000015307	rab11ba	89	43.523
ENSORLG00000025395	-	75	45.806	ENSORLG00000002071	-	64	45.806
ENSORLG00000025395	-	82	38.095	ENSORLG00000017806	rab9a	83	38.095
ENSORLG00000025395	-	83	38.235	ENSORLG00000006405	rab9b	80	38.235
ENSORLG00000025395	-	87	33.898	ENSORLG00000025819	-	93	33.898
ENSORLG00000025395	-	88	38.547	ENSORLG00000029090	-	87	38.547
ENSORLG00000025395	-	95	36.224	ENSORLG00000006628	-	93	36.224

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000025395	-	100	92.500	ENSAPOG00000001040	-	100	92.500	Acanthochromis_polyacanthus
ENSORLG00000025395	-	100	65.174	ENSACIG00000003157	-	100	65.174	Amphilophus_citrinellus
ENSORLG00000025395	-	100	92.500	ENSAOCG00000015908	-	100	92.500	Amphiprion_ocellaris
ENSORLG00000025395	-	100	92.500	ENSAPEG00000004121	-	100	92.500	Amphiprion_percula
ENSORLG00000025395	-	100	90.000	ENSATEG00000023662	-	100	90.000	Anabas_testudineus
ENSORLG00000025395	-	100	91.000	ENSACLG00000019643	-	100	91.000	Astatotilapia_calliptera
ENSORLG00000025395	-	100	88.000	ENSCVAG00000022649	-	100	88.000	Cyprinodon_variegatus
ENSORLG00000025395	-	86	72.093	ENSDARG00000103934	megf8	99	72.093	Danio_rerio
ENSORLG00000025395	-	100	87.500	ENSGAFG00000014787	-	100	87.500	Gambusia_affinis
ENSORLG00000025395	-	100	91.000	ENSHBUG00000003728	-	100	91.000	Haplochromis_burtoni
ENSORLG00000025395	-	100	91.000	ENSMZEG00005015817	-	100	91.000	Maylandia_zebra
ENSORLG00000025395	-	100	91.000	ENSMMOG00000003924	-	100	91.000	Mola_mola
ENSORLG00000025395	-	100	90.500	ENSMALG00000020807	-	100	90.500	Monopterus_albus
ENSORLG00000025395	-	54	87.963	ENSOPRG00000014416	-	100	87.963	Ochotona_princeps
ENSORLG00000025395	-	100	99.500	ENSORLG00020009535	-	100	99.500	Oryzias_latipes_hni
ENSORLG00000025395	-	100	99.500	ENSORLG00015015518	-	100	99.500	Oryzias_latipes_hsok
ENSORLG00000025395	-	100	85.572	ENSPKIG00000014528	-	100	85.572	Paramormyrops_kingsleyae
ENSORLG00000025395	-	100	88.000	ENSPFOG00000014418	-	100	88.000	Poecilia_formosa
ENSORLG00000025395	-	100	88.000	ENSPLAG00000003181	-	100	88.000	Poecilia_latipinna
ENSORLG00000025395	-	100	88.000	ENSPMEG00000008020	-	100	88.000	Poecilia_mexicana
ENSORLG00000025395	-	100	88.000	ENSPMEG00000022988	-	100	88.000	Poecilia_mexicana
ENSORLG00000025395	-	100	90.000	ENSPNYG00000004681	-	100	90.000	Pundamilia_nyererei
ENSORLG00000025395	-	100	89.000	ENSSFOG00015021754	rab13	100	89.000	Scleropages_formosus
ENSORLG00000025395	-	100	91.000	ENSSMAG00000016376	-	100	91.000	Scophthalmus_maximus
ENSORLG00000025395	-	100	65.049	ENSSMAG00000002569	-	100	65.049	Scophthalmus_maximus
ENSORLG00000025395	-	100	92.500	ENSSDUG00000006307	-	100	92.500	Seriola_dumerili
ENSORLG00000025395	-	100	92.500	ENSSLDG00000015823	-	100	92.500	Seriola_lalandi_dorsalis
ENSORLG00000025395	-	100	93.000	ENSSPAG00000022440	-	100	93.000	Stegastes_partitus
ENSORLG00000025395	-	100	89.500	ENSTNIG00000018319	-	100	89.500	Tetraodon_nigroviridis
ENSORLG00000025395	-	100	88.000	ENSXMAG00000016094	-	100	88.000	Xiphophorus_maculatus