EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSORLG00000025900 (Gene tree)
Gene ID
101175071
Gene Symbol
lsm3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Oryzias_latipes
Status
putative
Strand
Plus strand
Length
4074 bases
Position
chr5:18334916-18338989
Accession
101175071
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00000042855LSMPF01423.223.9e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00000037990-1043XM_004068900ENSORLP00000042855102 (aa)XP_004068948UPI0002A4AF3A
Gene Model
Click here to download ENSORLG00000025900's gene model file
Pathways
Pathway IDPathway NameSource
ola03018RNA degradationKEGG
ola03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000025900's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSORLG00000025900lsm37732.927ENSORLG00000026725snrpd26932.927
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00000025900lsm310093.137ENSG00000170860LSM310093.137Homo_sapiens
ENSORLG00000025900lsm310098.039ENSAPOG00000018947lsm310098.039Acanthochromis_polyacanthus
ENSORLG00000025900lsm310093.137ENSAMEG00000009405LSM310093.137Ailuropoda_melanoleuca
ENSORLG00000025900lsm310098.039ENSACIG00000004574lsm37198.039Amphilophus_citrinellus
ENSORLG00000025900lsm310098.039ENSAOCG00000007658lsm310098.039Amphiprion_ocellaris
ENSORLG00000025900lsm310098.039ENSAPEG00000018621lsm310098.039Amphiprion_percula
ENSORLG00000025900lsm310098.039ENSATEG00000005153lsm310098.039Anabas_testudineus
ENSORLG00000025900lsm39395.789ENSAPLG00000014499LSM310095.789Anas_platyrhynchos
ENSORLG00000025900lsm310094.118ENSACAG00000013503LSM310094.118Anolis_carolinensis
ENSORLG00000025900lsm310093.137ENSANAG00000034627LSM310093.137Aotus_nancymaae
ENSORLG00000025900lsm310090.196ENSANAG00000002903-10090.196Aotus_nancymaae
ENSORLG00000025900lsm39598.969ENSACLG00000001726-9498.969Astatotilapia_calliptera
ENSORLG00000025900lsm310096.078ENSAMXG00000041214lsm310096.078Astyanax_mexicanus
ENSORLG00000025900lsm39495.833ENSBTAG00000007363LSM310095.833Bos_taurus
ENSORLG00000025900lsm310069.608WBGene00003077lsm-310069.608Caenorhabditis_elegans
ENSORLG00000025900lsm310091.176ENSCAFG00000001760LSM310091.176Canis_familiaris
ENSORLG00000025900lsm310090.196ENSCAFG00020026452-10090.196Canis_lupus_dingo
ENSORLG00000025900lsm310091.176ENSCAFG00020021584-10091.176Canis_lupus_dingo
ENSORLG00000025900lsm310091.176ENSCAFG00020017266-10091.176Canis_lupus_dingo
ENSORLG00000025900lsm310084.112ENSCAFG00020020950-10084.112Canis_lupus_dingo
ENSORLG00000025900lsm310084.314ENSCAFG00020016680-10084.314Canis_lupus_dingo
ENSORLG00000025900lsm310093.137ENSCHIG00000024650LSM310093.137Capra_hircus
ENSORLG00000025900lsm310094.118ENSTSYG00000005204-10094.118Carlito_syrichta
ENSORLG00000025900lsm39975.248ENSTSYG00000028528-9975.248Carlito_syrichta
ENSORLG00000025900lsm39495.833ENSCAPG00000015760LSM310095.833Cavia_aperea
ENSORLG00000025900lsm310093.137ENSCPOG00000034071LSM310093.137Cavia_porcellus
ENSORLG00000025900lsm310093.137ENSCCAG00000036499-10093.137Cebus_capucinus
ENSORLG00000025900lsm310073.529ENSCCAG00000032763-10073.529Cebus_capucinus
ENSORLG00000025900lsm310093.137ENSCCAG00000019503-10093.137Cebus_capucinus
ENSORLG00000025900lsm39973.267ENSCATG00000031630-9973.267Cercocebus_atys
ENSORLG00000025900lsm310093.137ENSCATG00000039421LSM310093.137Cercocebus_atys
ENSORLG00000025900lsm310093.137ENSCLAG00000015997LSM310093.137Chinchilla_lanigera
ENSORLG00000025900lsm310088.235ENSCSAG00000019525-10088.235Chlorocebus_sabaeus
ENSORLG00000025900lsm310094.118ENSCPBG00000014531LSM310094.118Chrysemys_picta_bellii
ENSORLG00000025900lsm310081.731ENSCSAVG00000009542-10081.731Ciona_savignyi
ENSORLG00000025900lsm310093.137ENSCANG00000033944-10093.137Colobus_angolensis_palliatus
ENSORLG00000025900lsm310091.176ENSCANG00000018782-10091.176Colobus_angolensis_palliatus
ENSORLG00000025900lsm310090.196ENSCANG00000038037-10090.196Colobus_angolensis_palliatus
ENSORLG00000025900lsm310093.137ENSCGRG00001017598Lsm310093.137Cricetulus_griseus_chok1gshd
ENSORLG00000025900lsm310070.874ENSCGRG00001008639-10070.874Cricetulus_griseus_chok1gshd
ENSORLG00000025900lsm39880.000ENSCGRG00001011396-10080.000Cricetulus_griseus_chok1gshd
ENSORLG00000025900lsm39381.053ENSCGRG00000012129-10081.053Cricetulus_griseus_crigri
ENSORLG00000025900lsm310093.137ENSCGRG00000016159Lsm310093.137Cricetulus_griseus_crigri
ENSORLG00000025900lsm310098.039ENSCSEG00000015071lsm37798.039Cynoglossus_semilaevis
ENSORLG00000025900lsm310097.059ENSCVAG00000006933lsm310097.059Cyprinodon_variegatus
ENSORLG00000025900lsm310096.078ENSDARG00000089663lsm310096.078Danio_rerio
ENSORLG00000025900lsm310093.137ENSDNOG00000030808LSM310093.137Dasypus_novemcinctus
ENSORLG00000025900lsm310093.137ENSDORG00000006894-10093.137Dipodomys_ordii
ENSORLG00000025900lsm310073.529ENSDORG00000024490-10073.529Dipodomys_ordii
ENSORLG00000025900lsm310078.641FBgn0051184LSm310078.641Drosophila_melanogaster
ENSORLG00000025900lsm310093.137ENSETEG00000016207LSM310093.137Echinops_telfairi
ENSORLG00000025900lsm310089.216ENSEBUG00000004943lsm310089.216Eptatretus_burgeri
ENSORLG00000025900lsm310093.137ENSEASG00005015443LSM310093.137Equus_asinus_asinus
ENSORLG00000025900lsm310093.137ENSECAG00000007803LSM310093.137Equus_caballus
ENSORLG00000025900lsm310096.078ENSELUG00000018922lsm310096.078Esox_lucius
ENSORLG00000025900lsm310093.137ENSFCAG00000038453LSM310093.137Felis_catus
ENSORLG00000025900lsm310070.588ENSFCAG00000044344-10070.588Felis_catus
ENSORLG00000025900lsm310094.118ENSFALG00000012644LSM310094.118Ficedula_albicollis
ENSORLG00000025900lsm310093.137ENSFDAG00000011470LSM310093.137Fukomys_damarensis
ENSORLG00000025900lsm310098.039ENSFHEG00000000876lsm310098.039Fundulus_heteroclitus
ENSORLG00000025900lsm39396.842ENSGMOG00000011024lsm310096.842Gadus_morhua
ENSORLG00000025900lsm310098.039ENSGAFG00000013965lsm310098.039Gambusia_affinis
ENSORLG00000025900lsm310098.039ENSGACG00000003488lsm310098.039Gasterosteus_aculeatus
ENSORLG00000025900lsm310094.118ENSGAGG00000025707LSM310094.118Gopherus_agassizii
ENSORLG00000025900lsm310093.137ENSGGOG00000010006LSM310093.137Gorilla_gorilla
ENSORLG00000025900lsm310098.039ENSHBUG00000022399lsm310098.039Haplochromis_burtoni
ENSORLG00000025900lsm310073.529ENSHGLG00000015564-10073.529Heterocephalus_glaber_female
ENSORLG00000025900lsm310093.137ENSHGLG00000000651LSM310093.137Heterocephalus_glaber_female
ENSORLG00000025900lsm310073.529ENSHGLG00100010658-10073.529Heterocephalus_glaber_male
ENSORLG00000025900lsm310093.137ENSHGLG00100011343LSM310093.137Heterocephalus_glaber_male
ENSORLG00000025900lsm310099.020ENSHCOG00000013481lsm310099.020Hippocampus_comes
ENSORLG00000025900lsm310096.078ENSIPUG00000009207lsm310096.078Ictalurus_punctatus
ENSORLG00000025900lsm310093.137ENSSTOG00000006842LSM310093.137Ictidomys_tridecemlineatus
ENSORLG00000025900lsm310085.294ENSJJAG00000012797-10085.294Jaculus_jaculus
ENSORLG00000025900lsm310093.137ENSJJAG00000017351Lsm310093.137Jaculus_jaculus
ENSORLG00000025900lsm39871.000ENSJJAG00000018311-9871.000Jaculus_jaculus
ENSORLG00000025900lsm310098.039ENSKMAG00000015182lsm310098.039Kryptolebias_marmoratus
ENSORLG00000025900lsm39597.938ENSLBEG00000021292lsm39997.938Labrus_bergylta
ENSORLG00000025900lsm310094.118ENSLOCG00000013560lsm310094.118Lepisosteus_oculatus
ENSORLG00000025900lsm310092.233ENSLAFG00000023308LSM310092.233Loxodonta_africana
ENSORLG00000025900lsm310093.137ENSMFAG00000003185LSM310093.137Macaca_fascicularis
ENSORLG00000025900lsm310093.137ENSMMUG00000023126LSM310093.137Macaca_mulatta
ENSORLG00000025900lsm39674.490ENSMMUG00000002294-9574.490Macaca_mulatta
ENSORLG00000025900lsm310071.569ENSMMUG00000043596-10071.569Macaca_mulatta
ENSORLG00000025900lsm310093.137ENSMNEG00000043632LSM310093.137Macaca_nemestrina
ENSORLG00000025900lsm39975.248ENSMNEG00000037686-9975.248Macaca_nemestrina
ENSORLG00000025900lsm310093.137ENSMLEG00000036162LSM310093.137Mandrillus_leucophaeus
ENSORLG00000025900lsm310098.039ENSMAMG00000012807lsm310098.039Mastacembelus_armatus
ENSORLG00000025900lsm310098.039ENSMZEG00005016682lsm37398.039Maylandia_zebra
ENSORLG00000025900lsm39495.833ENSMGAG00000007776LSM310095.833Meleagris_gallopavo
ENSORLG00000025900lsm310092.157ENSMICG00000032361-10092.157Microcebus_murinus
ENSORLG00000025900lsm310079.412ENSMICG00000027821-10079.412Microcebus_murinus
ENSORLG00000025900lsm310093.137ENSMOCG00000014269Lsm310093.137Microtus_ochrogaster
ENSORLG00000025900lsm310098.039ENSMMOG00000020715lsm310098.039Mola_mola
ENSORLG00000025900lsm310094.118ENSMODG00000007275LSM310094.118Monodelphis_domestica
ENSORLG00000025900lsm310098.039ENSMALG00000006485lsm310098.039Monopterus_albus
ENSORLG00000025900lsm310093.137ENSMUSG00000034192Lsm310093.137Mus_musculus
ENSORLG00000025900lsm310093.137MGP_PahariEiJ_G0022402Lsm310093.137Mus_pahari
ENSORLG00000025900lsm310093.137MGP_SPRETEiJ_G0029681Lsm310093.137Mus_spretus
ENSORLG00000025900lsm38384.706ENSMPUG00000017256-10084.706Mustela_putorius_furo
ENSORLG00000025900lsm39782.828ENSMPUG00000019120-9782.828Mustela_putorius_furo
ENSORLG00000025900lsm310088.235ENSMLUG00000024700-10088.235Myotis_lucifugus
ENSORLG00000025900lsm310093.137ENSMLUG00000010677LSM310093.137Myotis_lucifugus
ENSORLG00000025900lsm310093.137ENSNGAG00000022450Lsm310093.137Nannospalax_galili
ENSORLG00000025900lsm39977.228ENSNGAG00000010207-9977.228Nannospalax_galili
ENSORLG00000025900lsm310070.588ENSNGAG00000013716-10070.588Nannospalax_galili
ENSORLG00000025900lsm310098.039ENSNBRG00000014318lsm310098.039Neolamprologus_brichardi
ENSORLG00000025900lsm310084.314ENSNLEG00000030229-10084.314Nomascus_leucogenys
ENSORLG00000025900lsm310093.137ENSNLEG00000005079LSM310093.137Nomascus_leucogenys
ENSORLG00000025900lsm310091.176ENSODEG00000019158-10091.176Octodon_degus
ENSORLG00000025900lsm310092.157ENSODEG00000019740-10092.157Octodon_degus
ENSORLG00000025900lsm310093.137ENSODEG00000001726LSM310093.137Octodon_degus
ENSORLG00000025900lsm310086.275ENSODEG00000019403-10086.275Octodon_degus
ENSORLG00000025900lsm310098.039ENSONIG00000000370lsm310098.039Oreochromis_niloticus
ENSORLG00000025900lsm310098.039ENSONIG00000021369-10098.039Oreochromis_niloticus
ENSORLG00000025900lsm310094.118ENSOANG00000012273LSM310094.118Ornithorhynchus_anatinus
ENSORLG00000025900lsm310093.137ENSOCUG00000027653-10093.137Oryctolagus_cuniculus
ENSORLG00000025900lsm310090.196ENSOCUG00000011088-10090.196Oryctolagus_cuniculus
ENSORLG00000025900lsm3100100.000ENSORLG00020007125lsm3100100.000Oryzias_latipes_hni
ENSORLG00000025900lsm3100100.000ENSORLG00015002944lsm3100100.000Oryzias_latipes_hsok
ENSORLG00000025900lsm3100100.000ENSOMEG00000001915lsm3100100.000Oryzias_melastigma
ENSORLG00000025900lsm39693.878ENSOGAG00000028858-10093.878Otolemur_garnettii
ENSORLG00000025900lsm310093.137ENSOGAG00000007659-10093.137Otolemur_garnettii
ENSORLG00000025900lsm310084.314ENSOGAG00000033051-10084.314Otolemur_garnettii
ENSORLG00000025900lsm310092.233ENSOARG00000000600LSM310092.233Ovis_aries
ENSORLG00000025900lsm310093.137ENSPPAG00000034074LSM310093.137Pan_paniscus
ENSORLG00000025900lsm310093.137ENSPPRG00000012912-10093.137Panthera_pardus
ENSORLG00000025900lsm310092.157ENSPPRG00000020953-10092.157Panthera_pardus
ENSORLG00000025900lsm39987.129ENSPPRG00000010610-8987.129Panthera_pardus
ENSORLG00000025900lsm310093.137ENSPTIG00000013072-10093.137Panthera_tigris_altaica
ENSORLG00000025900lsm310093.137ENSPTIG00000003463-10093.137Panthera_tigris_altaica
ENSORLG00000025900lsm310093.137ENSPTRG00000014650LSM310093.137Pan_troglodytes
ENSORLG00000025900lsm310093.137ENSPANG00000009378LSM310093.137Papio_anubis
ENSORLG00000025900lsm310072.549ENSPANG00000032192-10072.549Papio_anubis
ENSORLG00000025900lsm310095.098ENSPKIG00000008037lsm39195.098Paramormyrops_kingsleyae
ENSORLG00000025900lsm310094.118ENSPSIG00000015720LSM310094.118Pelodiscus_sinensis
ENSORLG00000025900lsm39693.878ENSPMGG00000012103lsm39993.878Periophthalmus_magnuspinnatus
ENSORLG00000025900lsm310077.451ENSPEMG00000020213-10077.451Peromyscus_maniculatus_bairdii
ENSORLG00000025900lsm310093.137ENSPEMG00000015797Lsm310093.137Peromyscus_maniculatus_bairdii
ENSORLG00000025900lsm310098.039ENSPFOG00000008372lsm310098.039Poecilia_formosa
ENSORLG00000025900lsm310098.039ENSPLAG00000000563lsm310098.039Poecilia_latipinna
ENSORLG00000025900lsm310098.039ENSPMEG00000022052lsm310098.039Poecilia_mexicana
ENSORLG00000025900lsm310098.039ENSPREG00000022485lsm310098.039Poecilia_reticulata
ENSORLG00000025900lsm310093.137ENSPPYG00000013402LSM310093.137Pongo_abelii
ENSORLG00000025900lsm310093.137ENSPCAG00000017077LSM310093.137Procavia_capensis
ENSORLG00000025900lsm310092.157ENSPCOG00000016217-10092.157Propithecus_coquereli
ENSORLG00000025900lsm39471.875ENSPCOG00000014435-9871.875Propithecus_coquereli
ENSORLG00000025900lsm310093.137ENSPVAG00000016795LSM310093.137Pteropus_vampyrus
ENSORLG00000025900lsm310098.039ENSPNYG00000009552lsm37398.039Pundamilia_nyererei
ENSORLG00000025900lsm310096.078ENSPNAG00000023467lsm310096.078Pygocentrus_nattereri
ENSORLG00000025900lsm310093.137ENSRNOG00000008733Lsm310093.137Rattus_norvegicus
ENSORLG00000025900lsm310077.451ENSRBIG00000043783-10077.451Rhinopithecus_bieti
ENSORLG00000025900lsm310093.137ENSRBIG00000034399LSM310093.137Rhinopithecus_bieti
ENSORLG00000025900lsm310082.353ENSRROG00000044047-10082.353Rhinopithecus_roxellana
ENSORLG00000025900lsm310075.490ENSRROG00000044056-10075.490Rhinopithecus_roxellana
ENSORLG00000025900lsm310078.431ENSRROG00000039868-10078.431Rhinopithecus_roxellana
ENSORLG00000025900lsm310093.137ENSRROG00000033276-10093.137Rhinopithecus_roxellana
ENSORLG00000025900lsm310093.137ENSSBOG00000024310LSM310093.137Saimiri_boliviensis_boliviensis
ENSORLG00000025900lsm310096.078ENSSFOG00015007071lsm310096.078Scleropages_formosus
ENSORLG00000025900lsm310098.039ENSSMAG00000001818lsm310098.039Scophthalmus_maximus
ENSORLG00000025900lsm310098.039ENSSDUG00000006040lsm310098.039Seriola_dumerili
ENSORLG00000025900lsm310098.039ENSSLDG00000006399lsm310098.039Seriola_lalandi_dorsalis
ENSORLG00000025900lsm35796.552ENSSARG00000005275-10096.552Sorex_araneus
ENSORLG00000025900lsm39395.789ENSSPUG00000017047-9995.789Sphenodon_punctatus
ENSORLG00000025900lsm310084.314ENSSPUG00000005394LSM310084.314Sphenodon_punctatus
ENSORLG00000025900lsm310085.294ENSSPAG00000000934lsm310085.294Stegastes_partitus
ENSORLG00000025900lsm310093.137ENSSSCG00000011601LSM310093.137Sus_scrofa
ENSORLG00000025900lsm39570.103ENSSSCG00000023718-9970.103Sus_scrofa
ENSORLG00000025900lsm310094.118ENSTGUG00000008327LSM310094.118Taeniopygia_guttata
ENSORLG00000025900lsm310098.039ENSTRUG00000023175lsm310098.039Takifugu_rubripes
ENSORLG00000025900lsm310098.039ENSTNIG00000005589lsm310098.039Tetraodon_nigroviridis
ENSORLG00000025900lsm310083.333ENSTBEG00000001050-9983.333Tupaia_belangeri
ENSORLG00000025900lsm310093.137ENSTTRG00000011197LSM310093.137Tursiops_truncatus
ENSORLG00000025900lsm310093.137ENSUAMG00000017250-10093.137Ursus_americanus
ENSORLG00000025900lsm310093.137ENSUMAG00000015905LSM310093.137Ursus_maritimus
ENSORLG00000025900lsm39395.789ENSVPAG00000010709LSM310095.789Vicugna_pacos
ENSORLG00000025900lsm310088.235ENSVVUG00000005684-10088.235Vulpes_vulpes
ENSORLG00000025900lsm310090.196ENSVVUG00000029294-10090.196Vulpes_vulpes
ENSORLG00000025900lsm310084.314ENSVVUG00000024228-10084.314Vulpes_vulpes
ENSORLG00000025900lsm310089.216ENSVVUG00000007332-9189.216Vulpes_vulpes
ENSORLG00000025900lsm310088.235ENSVVUG00000006481-10088.235Vulpes_vulpes
ENSORLG00000025900lsm310094.118ENSXETG00000011534lsm310094.118Xenopus_tropicalis
ENSORLG00000025900lsm310098.039ENSXCOG00000017432LSM310098.039Xiphophorus_couchianus
ENSORLG00000025900lsm310098.039ENSXMAG00000009151lsm310098.039Xiphophorus_maculatus

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