EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000026560 (Gene tree)
Gene ID: 101170990
Gene Symbol: PABPN1L
Alias: -
Full Name: poly(A) binding protein nuclear 1 like%2C cytoplasmic
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 5966 bases
Position: chr3:17431737-17437702
Accession: 101170990
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000032976	RRM_1	PF00076.22	4.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000037234	PABPN1L-201	3266	XM_004067052	ENSORLP00000032976	259 (aa)	XP_004067100	UPI0002A48AF7

Gene Model

Click here to download ENSORLG00000026560's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000026560's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000026560	PABPN1L	79	52.727	ENSORLG00000027900	pabpn1	79	56.771

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000026560	PABPN1L	75	52.475	ENSG00000205022	PABPN1L	70	52.475	Homo_sapiens
ENSORLG00000026560	PABPN1L	91	85.000	ENSAPOG00000000685	PABPN1L	78	85.417	Acanthochromis_polyacanthus
ENSORLG00000026560	PABPN1L	91	84.681	ENSACIG00000021400	PABPN1L	98	84.681	Amphilophus_citrinellus
ENSORLG00000026560	PABPN1L	100	83.270	ENSAOCG00000019844	PABPN1L	100	83.270	Amphiprion_ocellaris
ENSORLG00000026560	PABPN1L	100	82.890	ENSAPEG00000019534	PABPN1L	100	82.890	Amphiprion_percula
ENSORLG00000026560	PABPN1L	91	84.874	ENSATEG00000011646	PABPN1L	95	84.874	Anabas_testudineus
ENSORLG00000026560	PABPN1L	73	54.255	ENSACAG00000013250	PABPN1L	92	54.255	Anolis_carolinensis
ENSORLG00000026560	PABPN1L	72	51.042	ENSANAG00000038178	PABPN1L	73	49.275	Aotus_nancymaae
ENSORLG00000026560	PABPN1L	100	82.061	ENSACLG00000025147	PABPN1L	100	82.824	Astatotilapia_calliptera
ENSORLG00000026560	PABPN1L	54	70.213	ENSAMXG00000010873	PABPN1L	92	53.361	Astyanax_mexicanus
ENSORLG00000026560	PABPN1L	62	47.826	ENSBTAG00000023752	-	60	47.826	Bos_taurus
ENSORLG00000026560	PABPN1L	71	52.308	ENSCJAG00000045284	PABPN1L	67	54.645	Callithrix_jacchus
ENSORLG00000026560	PABPN1L	63	46.707	ENSCHIG00000013987	PABPN1L	62	46.707	Capra_hircus
ENSORLG00000026560	PABPN1L	57	51.299	ENSCAPG00000007240	PABPN1L	67	50.267	Cavia_aperea
ENSORLG00000026560	PABPN1L	62	49.405	ENSCPOG00000025951	PABPN1L	76	46.635	Cavia_porcellus
ENSORLG00000026560	PABPN1L	75	50.754	ENSCCAG00000027631	PABPN1L	70	50.754	Cebus_capucinus
ENSORLG00000026560	PABPN1L	71	51.980	ENSCATG00000031060	PABPN1L	73	52.736	Cercocebus_atys
ENSORLG00000026560	PABPN1L	58	53.846	ENSCLAG00000000704	PABPN1L	74	48.000	Chinchilla_lanigera
ENSORLG00000026560	PABPN1L	71	49.083	ENSCSAG00000002881	PABPN1L	75	49.083	Chlorocebus_sabaeus
ENSORLG00000026560	PABPN1L	57	64.430	ENSCPBG00000023441	PABPN1L	55	59.538	Chrysemys_picta_bellii
ENSORLG00000026560	PABPN1L	71	49.751	ENSCANG00000039336	PABPN1L	73	49.505	Colobus_angolensis_palliatus
ENSORLG00000026560	PABPN1L	71	48.500	ENSCGRG00001013211	Pabpn1l	73	48.500	Cricetulus_griseus_chok1gshd
ENSORLG00000026560	PABPN1L	71	48.500	ENSCGRG00000015868	Pabpn1l	73	48.500	Cricetulus_griseus_crigri
ENSORLG00000026560	PABPN1L	100	77.692	ENSCSEG00000001142	pabpn1l	100	77.692	Cynoglossus_semilaevis
ENSORLG00000026560	PABPN1L	100	81.369	ENSCVAG00000015547	PABPN1L	100	84.030	Cyprinodon_variegatus
ENSORLG00000026560	PABPN1L	62	52.874	ENSDNOG00000034677	PABPN1L	64	54.651	Dasypus_novemcinctus
ENSORLG00000026560	PABPN1L	71	51.295	ENSEASG00005000777	PABPN1L	72	51.295	Equus_asinus_asinus
ENSORLG00000026560	PABPN1L	71	52.332	ENSECAG00000000378	PABPN1L	72	52.332	Equus_caballus
ENSORLG00000026560	PABPN1L	50	60.305	ENSEEUG00000004747	PABPN1L	53	60.305	Erinaceus_europaeus
ENSORLG00000026560	PABPN1L	96	63.600	ENSELUG00000018385	PABPN1L	96	67.460	Esox_lucius
ENSORLG00000026560	PABPN1L	62	53.254	ENSFCAG00000010465	PABPN1L	73	49.751	Felis_catus
ENSORLG00000026560	PABPN1L	60	61.538	ENSFALG00000003319	PABPN1L	65	61.538	Ficedula_albicollis
ENSORLG00000026560	PABPN1L	58	55.128	ENSFDAG00000021067	PABPN1L	62	52.976	Fukomys_damarensis
ENSORLG00000026560	PABPN1L	100	82.824	ENSFHEG00000018295	PABPN1L	100	82.824	Fundulus_heteroclitus
ENSORLG00000026560	PABPN1L	100	72.180	ENSGMOG00000001475	PABPN1L	100	74.436	Gadus_morhua
ENSORLG00000026560	PABPN1L	61	55.882	ENSGALG00000006242	PABPN1L	95	55.882	Gallus_gallus
ENSORLG00000026560	PABPN1L	100	80.608	ENSGAFG00000012565	PABPN1L	100	83.270	Gambusia_affinis
ENSORLG00000026560	PABPN1L	100	77.154	ENSGACG00000015428	PABPN1L	100	77.154	Gasterosteus_aculeatus
ENSORLG00000026560	PABPN1L	59	64.052	ENSGAGG00000010613	PABPN1L	52	64.052	Gopherus_agassizii
ENSORLG00000026560	PABPN1L	71	53.000	ENSGGOG00000012670	PABPN1L	73	52.736	Gorilla_gorilla
ENSORLG00000026560	PABPN1L	100	83.206	ENSHBUG00000002388	PABPN1L	100	83.206	Haplochromis_burtoni
ENSORLG00000026560	PABPN1L	63	50.588	ENSHGLG00000014207	PABPN1L	66	50.588	Heterocephalus_glaber_female
ENSORLG00000026560	PABPN1L	63	50.588	ENSHGLG00100005230	PABPN1L	66	50.588	Heterocephalus_glaber_male
ENSORLG00000026560	PABPN1L	100	79.851	ENSHCOG00000004151	PABPN1L	99	79.851	Hippocampus_comes
ENSORLG00000026560	PABPN1L	66	67.251	ENSIPUG00000023583	PABPN1L	87	69.186	Ictalurus_punctatus
ENSORLG00000026560	PABPN1L	71	51.042	ENSSTOG00000020814	PABPN1L	57	57.325	Ictidomys_tridecemlineatus
ENSORLG00000026560	PABPN1L	73	49.215	ENSJJAG00000006433	Pabpn1l	69	49.215	Jaculus_jaculus
ENSORLG00000026560	PABPN1L	82	85.116	ENSKMAG00000001112	PABPN1L	100	84.956	Kryptolebias_marmoratus
ENSORLG00000026560	PABPN1L	100	79.245	ENSLBEG00000011647	PABPN1L	97	83.396	Labrus_bergylta
ENSORLG00000026560	PABPN1L	66	49.730	ENSLAFG00000025902	-	74	49.730	Loxodonta_africana
ENSORLG00000026560	PABPN1L	71	51.980	ENSMFAG00000002924	PABPN1L	73	52.736	Macaca_fascicularis
ENSORLG00000026560	PABPN1L	71	51.741	ENSMMUG00000012438	PABPN1L	73	52.500	Macaca_mulatta
ENSORLG00000026560	PABPN1L	71	52.239	ENSMNEG00000044808	PABPN1L	73	52.736	Macaca_nemestrina
ENSORLG00000026560	PABPN1L	71	51.741	ENSMLEG00000032667	PABPN1L	73	52.239	Mandrillus_leucophaeus
ENSORLG00000026560	PABPN1L	100	82.061	ENSMZEG00005002186	PABPN1L	100	82.824	Maylandia_zebra
ENSORLG00000026560	PABPN1L	73	46.667	ENSMAUG00000014032	Pabpn1l	72	46.667	Mesocricetus_auratus
ENSORLG00000026560	PABPN1L	74	49.246	ENSMICG00000028179	PABPN1L	70	50.000	Microcebus_murinus
ENSORLG00000026560	PABPN1L	63	49.425	ENSMOCG00000007955	Pabpn1l	64	49.425	Microtus_ochrogaster
ENSORLG00000026560	PABPN1L	80	81.731	ENSMMOG00000017714	PABPN1L	90	81.731	Mola_mola
ENSORLG00000026560	PABPN1L	66	50.276	ENSMODG00000003873	-	74	46.305	Monodelphis_domestica
ENSORLG00000026560	PABPN1L	100	81.298	ENSMALG00000016926	PABPN1L	100	81.298	Monopterus_albus
ENSORLG00000026560	PABPN1L	71	49.231	MGP_CAROLIEiJ_G0031670	Pabpn1l	71	49.231	Mus_caroli
ENSORLG00000026560	PABPN1L	76	48.325	ENSMUSG00000069867	Pabpn1l	75	48.325	Mus_musculus
ENSORLG00000026560	PABPN1L	71	51.282	MGP_PahariEiJ_G0023268	Pabpn1l	71	51.282	Mus_pahari
ENSORLG00000026560	PABPN1L	76	47.847	MGP_SPRETEiJ_G0032788	Pabpn1l	75	47.847	Mus_spretus
ENSORLG00000026560	PABPN1L	69	39.791	ENSMLUG00000003228	PABPN1L	65	39.791	Myotis_lucifugus
ENSORLG00000026560	PABPN1L	71	49.254	ENSNGAG00000023992	Pabpn1l	74	49.254	Nannospalax_galili
ENSORLG00000026560	PABPN1L	90	86.076	ENSNBRG00000017078	PABPN1L	100	86.076	Neolamprologus_brichardi
ENSORLG00000026560	PABPN1L	59	55.346	ENSOPRG00000005597	PABPN1L	63	53.216	Ochotona_princeps
ENSORLG00000026560	PABPN1L	65	52.023	ENSODEG00000004649	PABPN1L	63	52.023	Octodon_degus
ENSORLG00000026560	PABPN1L	73	51.852	ENSOANG00000013901	PABPN1L	74	51.813	Ornithorhynchus_anatinus
ENSORLG00000026560	PABPN1L	100	99.614	ENSORLG00020015068	PABPN1L	100	99.614	Oryzias_latipes_hni
ENSORLG00000026560	PABPN1L	100	100.000	ENSORLG00015000397	PABPN1L	100	100.000	Oryzias_latipes_hsok
ENSORLG00000026560	PABPN1L	100	93.077	ENSOMEG00000017896	PABPN1L	72	93.077	Oryzias_melastigma
ENSORLG00000026560	PABPN1L	69	54.211	ENSOGAG00000000433	PABPN1L	73	50.971	Otolemur_garnettii
ENSORLG00000026560	PABPN1L	57	53.704	ENSOARG00000013682	PABPN1L	64	48.969	Ovis_aries
ENSORLG00000026560	PABPN1L	71	51.244	ENSPPAG00000028866	PABPN1L	72	51.244	Pan_paniscus
ENSORLG00000026560	PABPN1L	66	51.366	ENSPPRG00000015106	PABPN1L	78	48.372	Panthera_pardus
ENSORLG00000026560	PABPN1L	66	53.409	ENSPTIG00000015606	PABPN1L	69	53.409	Panthera_tigris_altaica
ENSORLG00000026560	PABPN1L	71	51.244	ENSPTRG00000031120	PABPN1L	72	51.244	Pan_troglodytes
ENSORLG00000026560	PABPN1L	70	53.968	ENSPANG00000026039	PABPN1L	66	53.968	Papio_anubis
ENSORLG00000026560	PABPN1L	59	63.522	ENSPSIG00000003404	PABPN1L	82	63.522	Pelodiscus_sinensis
ENSORLG00000026560	PABPN1L	81	80.189	ENSPMGG00000013927	PABPN1L	100	79.556	Periophthalmus_magnuspinnatus
ENSORLG00000026560	PABPN1L	56	55.556	ENSPEMG00000016624	Pabpn1l	57	55.556	Peromyscus_maniculatus_bairdii
ENSORLG00000026560	PABPN1L	51	61.364	ENSPCIG00000007038	-	91	61.364	Phascolarctos_cinereus
ENSORLG00000026560	PABPN1L	100	80.989	ENSPFOG00000007001	PABPN1L	100	83.650	Poecilia_formosa
ENSORLG00000026560	PABPN1L	100	80.989	ENSPLAG00000018431	PABPN1L	100	83.650	Poecilia_latipinna
ENSORLG00000026560	PABPN1L	69	78.804	ENSPMEG00000000169	-	91	78.804	Poecilia_mexicana
ENSORLG00000026560	PABPN1L	100	80.989	ENSPMEG00000009108	PABPN1L	100	83.650	Poecilia_mexicana
ENSORLG00000026560	PABPN1L	82	85.185	ENSPREG00000022533	PABPN1L	100	84.848	Poecilia_reticulata
ENSORLG00000026560	PABPN1L	71	51.000	ENSPPYG00000007655	PABPN1L	72	50.746	Pongo_abelii
ENSORLG00000026560	PABPN1L	68	51.648	ENSPCOG00000024077	PABPN1L	64	51.648	Propithecus_coquereli
ENSORLG00000026560	PABPN1L	65	53.107	ENSPVAG00000002716	PABPN1L	63	53.107	Pteropus_vampyrus
ENSORLG00000026560	PABPN1L	100	82.061	ENSPNYG00000004803	PABPN1L	100	82.824	Pundamilia_nyererei
ENSORLG00000026560	PABPN1L	68	50.265	ENSRNOG00000029558	Pabpn1l	70	51.323	Rattus_norvegicus
ENSORLG00000026560	PABPN1L	71	51.485	ENSRBIG00000030740	PABPN1L	73	51.485	Rhinopithecus_bieti
ENSORLG00000026560	PABPN1L	71	50.990	ENSRROG00000035483	-	73	51.741	Rhinopithecus_roxellana
ENSORLG00000026560	PABPN1L	75	51.980	ENSRROG00000032240	-	73	50.476	Rhinopithecus_roxellana
ENSORLG00000026560	PABPN1L	71	51.741	ENSSBOG00000018410	PABPN1L	72	51.741	Saimiri_boliviensis_boliviensis
ENSORLG00000026560	PABPN1L	63	50.857	ENSSHAG00000010001	-	60	50.857	Sarcophilus_harrisii
ENSORLG00000026560	PABPN1L	100	77.612	ENSSMAG00000021348	PABPN1L	100	79.478	Scophthalmus_maximus
ENSORLG00000026560	PABPN1L	100	83.270	ENSSDUG00000006986	PABPN1L	100	83.270	Seriola_dumerili
ENSORLG00000026560	PABPN1L	100	83.270	ENSSLDG00000021845	PABPN1L	100	83.270	Seriola_lalandi_dorsalis
ENSORLG00000026560	PABPN1L	53	52.143	ENSSARG00000005178	-	62	52.143	Sorex_araneus
ENSORLG00000026560	PABPN1L	62	59.627	ENSSPUG00000007031	PABPN1L	72	59.877	Sphenodon_punctatus
ENSORLG00000026560	PABPN1L	100	83.270	ENSSPAG00000017978	PABPN1L	100	83.650	Stegastes_partitus
ENSORLG00000026560	PABPN1L	75	44.776	ENSSSCG00000036367	PABPN1L	73	50.254	Sus_scrofa
ENSORLG00000026560	PABPN1L	100	73.664	ENSTRUG00000024725	PABPN1L	100	73.664	Takifugu_rubripes
ENSORLG00000026560	PABPN1L	74	86.458	ENSTNIG00000009416	PABPN1L	100	86.458	Tetraodon_nigroviridis
ENSORLG00000026560	PABPN1L	64	52.571	ENSTTRG00000004691	PABPN1L	68	51.852	Tursiops_truncatus
ENSORLG00000026560	PABPN1L	56	54.717	ENSXETG00000011258	pabpn1l	86	53.158	Xenopus_tropicalis
ENSORLG00000026560	PABPN1L	79	84.804	ENSXCOG00000003254	PABPN1L	100	84.416	Xiphophorus_couchianus
ENSORLG00000026560	PABPN1L	81	82.381	ENSXMAG00000029090	PABPN1L	100	82.063	Xiphophorus_maculatus