EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000026844 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: -
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 14811 bases
Position: chr17:5893930-5908740
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000038990	ResIII	PF04851.15	4.7e-13	1	1
ENSORLP00000036743	ResIII	PF04851.15	1.8e-10	1	1
ENSORLP00000038990	DEAD	PF00270.29	1.6e-27	1	1
ENSORLP00000036743	DEAD	PF00270.29	8.7e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000043275	-	927	-	ENSORLP00000038990	308 (aa)	-	-
ENSORLT00000031240	-	2355	-	ENSORLP00000036743	785 (aa)	-	-

Gene Model

Click here to download ENSORLG00000026844's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000026844's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000026844	hfm1	95	31.306	ENSORLG00000012286	snrnp200	69	31.306
ENSORLG00000026844	hfm1	88	35.192	ENSORLG00000004221	ascc3	61	35.192

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000026844	hfm1	99	66.052	ENSG00000162669	HFM1	57	66.052	Homo_sapiens
ENSORLG00000026844	hfm1	100	82.995	ENSAPOG00000005304	hfm1	91	82.995	Acanthochromis_polyacanthus
ENSORLG00000026844	hfm1	99	65.517	ENSAMEG00000000432	HFM1	56	65.517	Ailuropoda_melanoleuca
ENSORLG00000026844	hfm1	99	81.034	ENSACIG00000021553	hfm1	75	81.034	Amphilophus_citrinellus
ENSORLG00000026844	hfm1	100	84.331	ENSAOCG00000022839	hfm1	96	81.061	Amphiprion_ocellaris
ENSORLG00000026844	hfm1	100	83.969	ENSAPEG00000014316	hfm1	96	81.519	Amphiprion_percula
ENSORLG00000026844	hfm1	99	81.897	ENSATEG00000019181	hfm1	67	81.053	Anabas_testudineus
ENSORLG00000026844	hfm1	99	64.619	ENSAPLG00000013639	HFM1	57	64.619	Anas_platyrhynchos
ENSORLG00000026844	hfm1	99	65.314	ENSANAG00000029513	HFM1	58	65.314	Aotus_nancymaae
ENSORLG00000026844	hfm1	99	82.420	ENSACLG00000009033	hfm1	94	82.420	Astatotilapia_calliptera
ENSORLG00000026844	hfm1	99	71.798	ENSAMXG00000006108	hfm1	56	71.798	Astyanax_mexicanus
ENSORLG00000026844	hfm1	99	65.191	ENSBTAG00000020856	HFM1	56	65.191	Bos_taurus
ENSORLG00000026844	hfm1	99	65.560	ENSCJAG00000001843	HFM1	57	65.560	Callithrix_jacchus
ENSORLG00000026844	hfm1	99	65.025	ENSCAFG00000020187	HFM1	56	65.025	Canis_familiaris
ENSORLG00000026844	hfm1	99	66.216	ENSTSYG00000014250	HFM1	57	66.216	Carlito_syrichta
ENSORLG00000026844	hfm1	99	64.901	ENSCPOG00000007421	HFM1	58	64.901	Cavia_porcellus
ENSORLG00000026844	hfm1	99	65.437	ENSCCAG00000033206	HFM1	57	65.437	Cebus_capucinus
ENSORLG00000026844	hfm1	99	65.806	ENSCATG00000030987	HFM1	57	65.806	Cercocebus_atys
ENSORLG00000026844	hfm1	99	66.332	ENSCLAG00000005173	HFM1	54	66.332	Chinchilla_lanigera
ENSORLG00000026844	hfm1	85	52.587	ENSCSAVG00000005094	-	100	52.587	Ciona_savignyi
ENSORLG00000026844	hfm1	97	61.315	ENSCGRG00001016995	Hfm1	56	61.315	Cricetulus_griseus_chok1gshd
ENSORLG00000026844	hfm1	99	63.592	ENSCGRG00000017181	Hfm1	57	63.592	Cricetulus_griseus_crigri
ENSORLG00000026844	hfm1	99	78.272	ENSCSEG00000017659	hfm1	75	78.272	Cynoglossus_semilaevis
ENSORLG00000026844	hfm1	87	79.014	ENSCVAG00000005075	hfm1	86	79.014	Cyprinodon_variegatus
ENSORLG00000026844	hfm1	99	71.734	ENSDARG00000104288	hfm1	73	71.734	Danio_rerio
ENSORLG00000026844	hfm1	99	64.648	ENSDNOG00000004776	HFM1	54	64.648	Dasypus_novemcinctus
ENSORLG00000026844	hfm1	99	63.373	ENSDORG00000014661	Hfm1	57	63.373	Dipodomys_ordii
ENSORLG00000026844	hfm1	65	61.765	ENSEBUG00000006133	-	89	62.441	Eptatretus_burgeri
ENSORLG00000026844	hfm1	98	64.956	ENSEASG00005015424	HFM1	80	64.956	Equus_asinus_asinus
ENSORLG00000026844	hfm1	99	65.191	ENSECAG00000024039	HFM1	55	65.191	Equus_caballus
ENSORLG00000026844	hfm1	99	77.834	ENSELUG00000018944	hfm1	90	77.834	Esox_lucius
ENSORLG00000026844	hfm1	99	65.560	ENSFCAG00000029116	HFM1	56	65.560	Felis_catus
ENSORLG00000026844	hfm1	99	65.356	ENSFALG00000001781	HFM1	57	65.356	Ficedula_albicollis
ENSORLG00000026844	hfm1	99	65.105	ENSFDAG00000020816	HFM1	55	65.105	Fukomys_damarensis
ENSORLG00000026844	hfm1	99	71.147	ENSGMOG00000017436	hfm1	84	71.147	Gadus_morhua
ENSORLG00000026844	hfm1	100	82.719	ENSGAFG00000018093	hfm1	91	82.719	Gambusia_affinis
ENSORLG00000026844	hfm1	99	77.160	ENSGACG00000015686	hfm1	83	77.160	Gasterosteus_aculeatus
ENSORLG00000026844	hfm1	63	72.081	ENSGAGG00000025197	-	60	72.081	Gopherus_agassizii
ENSORLG00000026844	hfm1	99	66.052	ENSGGOG00000038524	HFM1	57	66.052	Gorilla_gorilla
ENSORLG00000026844	hfm1	99	80.172	ENSHBUG00000007309	hfm1	77	80.074	Haplochromis_burtoni
ENSORLG00000026844	hfm1	99	79.771	ENSHCOG00000019632	hfm1	97	79.771	Hippocampus_comes
ENSORLG00000026844	hfm1	100	74.140	ENSIPUG00000017020	hfm1	89	74.140	Ictalurus_punctatus
ENSORLG00000026844	hfm1	99	64.084	ENSJJAG00000017198	Hfm1	58	64.084	Jaculus_jaculus
ENSORLG00000026844	hfm1	100	81.127	ENSKMAG00000002282	hfm1	84	81.127	Kryptolebias_marmoratus
ENSORLG00000026844	hfm1	99	82.398	ENSLBEG00000006759	hfm1	93	82.398	Labrus_bergylta
ENSORLG00000026844	hfm1	99	66.422	ENSLACG00000010698	HFM1	77	66.545	Latimeria_chalumnae
ENSORLG00000026844	hfm1	99	71.007	ENSLOCG00000004931	hfm1	75	71.007	Lepisosteus_oculatus
ENSORLG00000026844	hfm1	82	65.919	ENSLAFG00000015903	-	90	65.919	Loxodonta_africana
ENSORLG00000026844	hfm1	99	63.210	ENSMFAG00000003649	HFM1	56	63.210	Macaca_fascicularis
ENSORLG00000026844	hfm1	99	65.929	ENSMMUG00000006819	HFM1	57	65.929	Macaca_mulatta
ENSORLG00000026844	hfm1	94	51.923	ENSMNEG00000039833	-	67	51.923	Macaca_nemestrina
ENSORLG00000026844	hfm1	94	51.592	ENSMLEG00000027571	-	67	51.592	Mandrillus_leucophaeus
ENSORLG00000026844	hfm1	99	83.079	ENSMAMG00000004623	hfm1	96	83.079	Mastacembelus_armatus
ENSORLG00000026844	hfm1	99	82.420	ENSMZEG00005004679	hfm1	94	82.420	Maylandia_zebra
ENSORLG00000026844	hfm1	92	62.948	ENSMGAG00000008437	HFM1	93	62.948	Meleagris_gallopavo
ENSORLG00000026844	hfm1	99	63.793	ENSMAUG00000018858	Hfm1	57	63.793	Mesocricetus_auratus
ENSORLG00000026844	hfm1	99	65.111	ENSMICG00000037935	HFM1	57	65.111	Microcebus_murinus
ENSORLG00000026844	hfm1	99	64.039	ENSMOCG00000014812	Hfm1	57	64.039	Microtus_ochrogaster
ENSORLG00000026844	hfm1	100	83.312	ENSMMOG00000006148	hfm1	90	83.312	Mola_mola
ENSORLG00000026844	hfm1	99	83.969	ENSMALG00000002401	hfm1	92	83.969	Monopterus_albus
ENSORLG00000026844	hfm1	91	70.085	MGP_CAROLIEiJ_G0027496	Hfm1	52	70.085	Mus_caroli
ENSORLG00000026844	hfm1	99	63.916	ENSMUSG00000043410	Hfm1	57	63.916	Mus_musculus
ENSORLG00000026844	hfm1	99	63.793	MGP_PahariEiJ_G0017268	Hfm1	57	63.793	Mus_pahari
ENSORLG00000026844	hfm1	99	64.409	MGP_SPRETEiJ_G0028495	Hfm1	57	64.409	Mus_spretus
ENSORLG00000026844	hfm1	99	64.945	ENSMPUG00000004594	HFM1	55	64.945	Mustela_putorius_furo
ENSORLG00000026844	hfm1	99	64.699	ENSMLUG00000010200	HFM1	56	64.699	Myotis_lucifugus
ENSORLG00000026844	hfm1	99	82.675	ENSNBRG00000002910	hfm1	96	82.675	Neolamprologus_brichardi
ENSORLG00000026844	hfm1	99	64.663	ENSNLEG00000010285	HFM1	57	64.663	Nomascus_leucogenys
ENSORLG00000026844	hfm1	99	60.640	ENSOPRG00000013916	HFM1	57	60.640	Ochotona_princeps
ENSORLG00000026844	hfm1	99	80.911	ENSONIG00000010590	hfm1	78	80.911	Oreochromis_niloticus
ENSORLG00000026844	hfm1	100	84.729	ENSORLG00020002951	hfm1	64	84.729	Oryzias_latipes_hni
ENSORLG00000026844	hfm1	100	91.759	ENSOMEG00000016474	hfm1	57	91.759	Oryzias_melastigma
ENSORLG00000026844	hfm1	99	65.233	ENSOGAG00000032369	HFM1	66	65.233	Otolemur_garnettii
ENSORLG00000026844	hfm1	99	65.191	ENSOARG00000015812	HFM1	57	65.191	Ovis_aries
ENSORLG00000026844	hfm1	99	66.298	ENSPPAG00000024582	HFM1	61	66.298	Pan_paniscus
ENSORLG00000026844	hfm1	99	65.560	ENSPPRG00000003270	HFM1	56	65.560	Panthera_pardus
ENSORLG00000026844	hfm1	99	65.560	ENSPTIG00000018881	HFM1	56	65.560	Panthera_tigris_altaica
ENSORLG00000026844	hfm1	99	66.052	ENSPTRG00000000948	HFM1	57	66.052	Pan_troglodytes
ENSORLG00000026844	hfm1	99	65.683	ENSPANG00000009838	HFM1	57	65.683	Papio_anubis
ENSORLG00000026844	hfm1	99	73.214	ENSPKIG00000003810	hfm1	94	73.214	Paramormyrops_kingsleyae
ENSORLG00000026844	hfm1	99	77.834	ENSPMGG00000011059	hfm1	98	77.834	Periophthalmus_magnuspinnatus
ENSORLG00000026844	hfm1	99	64.039	ENSPEMG00000022852	Hfm1	57	64.039	Peromyscus_maniculatus_bairdii
ENSORLG00000026844	hfm1	99	65.521	ENSPCIG00000014233	HFM1	55	65.521	Phascolarctos_cinereus
ENSORLG00000026844	hfm1	99	80.049	ENSPFOG00000017194	hfm1	78	80.049	Poecilia_formosa
ENSORLG00000026844	hfm1	100	79.828	ENSPLAG00000000571	hfm1	74	79.828	Poecilia_latipinna
ENSORLG00000026844	hfm1	100	80.074	ENSPMEG00000019475	hfm1	75	80.074	Poecilia_mexicana
ENSORLG00000026844	hfm1	100	82.803	ENSPREG00000007803	hfm1	91	82.803	Poecilia_reticulata
ENSORLG00000026844	hfm1	99	65.806	ENSPPYG00000001163	HFM1	57	65.806	Pongo_abelii
ENSORLG00000026844	hfm1	99	60.148	ENSPVAG00000009713	HFM1	58	60.148	Pteropus_vampyrus
ENSORLG00000026844	hfm1	99	82.188	ENSPNYG00000001795	hfm1	94	82.188	Pundamilia_nyererei
ENSORLG00000026844	hfm1	99	75.000	ENSPNAG00000010865	hfm1	81	75.000	Pygocentrus_nattereri
ENSORLG00000026844	hfm1	99	64.409	ENSRNOG00000023299	Hfm1	57	64.409	Rattus_norvegicus
ENSORLG00000026844	hfm1	99	65.929	ENSRROG00000045569	HFM1	57	65.929	Rhinopithecus_roxellana
ENSORLG00000026844	hfm1	99	65.683	ENSSBOG00000027456	HFM1	58	65.683	Saimiri_boliviensis_boliviensis
ENSORLG00000026844	hfm1	72	65.878	ENSSHAG00000014616	-	67	65.878	Sarcophilus_harrisii
ENSORLG00000026844	hfm1	99	72.044	ENSSFOG00015020129	hfm1	54	72.044	Scleropages_formosus
ENSORLG00000026844	hfm1	99	80.882	ENSSMAG00000006907	hfm1	80	80.882	Scophthalmus_maximus
ENSORLG00000026844	hfm1	99	83.822	ENSSDUG00000011424	hfm1	91	83.822	Seriola_dumerili
ENSORLG00000026844	hfm1	99	83.715	ENSSLDG00000016386	hfm1	90	83.715	Seriola_lalandi_dorsalis
ENSORLG00000026844	hfm1	64	71.212	ENSSPUG00000003380	-	52	71.212	Sphenodon_punctatus
ENSORLG00000026844	hfm1	100	84.351	ENSSPAG00000001023	hfm1	92	84.351	Stegastes_partitus
ENSORLG00000026844	hfm1	99	65.683	ENSSSCG00000006912	HFM1	59	65.683	Sus_scrofa
ENSORLG00000026844	hfm1	99	65.233	ENSTGUG00000006172	HFM1	85	65.233	Taeniopygia_guttata
ENSORLG00000026844	hfm1	65	79.899	ENSTNIG00000006962	hfm1	95	80.562	Tetraodon_nigroviridis
ENSORLG00000026844	hfm1	99	65.068	ENSTTRG00000013933	HFM1	57	65.068	Tursiops_truncatus
ENSORLG00000026844	hfm1	99	62.362	ENSVPAG00000011331	HFM1	57	62.362	Vicugna_pacos
ENSORLG00000026844	hfm1	98	64.787	ENSVVUG00000020760	HFM1	80	64.787	Vulpes_vulpes
ENSORLG00000026844	hfm1	100	83.185	ENSXMAG00000004178	hfm1	90	83.185	Xiphophorus_maculatus