EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000027054 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 6199 bases
Position: chr9:4901872-4908070
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000042991	zf-C2H2	PF00096.26	4.4e-32	1	6
ENSORLP00000042991	zf-C2H2	PF00096.26	4.4e-32	2	6
ENSORLP00000042991	zf-C2H2	PF00096.26	4.4e-32	3	6
ENSORLP00000042991	zf-C2H2	PF00096.26	4.4e-32	4	6
ENSORLP00000042991	zf-C2H2	PF00096.26	4.4e-32	5	6
ENSORLP00000042991	zf-C2H2	PF00096.26	4.4e-32	6	6
ENSORLP00000042991	zf-met	PF12874.7	2.7e-07	1	2
ENSORLP00000042991	zf-met	PF12874.7	2.7e-07	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000043648	-	4994	-	ENSORLP00000042991	841 (aa)	-	UPI0005CC06F2

Gene Model

Click here to download ENSORLG00000027054's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000027054's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000027054	-	63	47.030	ENSORLG00000029027	-	81	49.282

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000027054	-	51	54.422	MGP_CAROLIEiJ_G0029322	Zfp235	68	54.422	Mus_caroli
ENSORLG00000027054	-	51	54.422	ENSMUSG00000047603	Zfp235	61	54.422	Mus_musculus
ENSORLG00000027054	-	52	53.741	MGP_PahariEiJ_G0021173	Zfp235	61	53.741	Mus_pahari
ENSORLG00000027054	-	51	54.422	MGP_SPRETEiJ_G0030416	Zfp235	61	54.422	Mus_spretus
ENSORLG00000027054	-	100	97.503	ENSORLG00020000181	-	100	97.503	Oryzias_latipes_hni
ENSORLG00000027054	-	100	94.893	ENSORLG00015017539	-	100	95.131	Oryzias_latipes_hsok
ENSORLG00000027054	-	99	71.548	ENSOMEG00000013771	-	99	71.412	Oryzias_melastigma