EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000027725 (Gene tree)
Gene ID: -
Gene Symbol: lsm5
Alias: -
Full Name: LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 5036 bases
Position: chr20:23644224-23649259
Accession: 101173342
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000031894	LSM	PF01423.22	2.1e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000029554	-	4247	XM_004081191	ENSORLP00000031894	156 (aa)	XP_004081239	-

Gene Model

Click here to download ENSORLG00000027725's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000027725's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000027725	lsm5	58	93.407	ENSG00000106355	LSM5	100	95.161	Homo_sapiens
ENSORLG00000027725	lsm5	53	97.561	ENSAPOG00000011743	LSM5	100	98.387	Acanthochromis_polyacanthus
ENSORLG00000027725	lsm5	58	97.802	ENSAPOG00000020779	LSM5	100	98.824	Acanthochromis_polyacanthus
ENSORLG00000027725	lsm5	58	93.407	ENSAMEG00000006700	LSM5	100	93.407	Ailuropoda_melanoleuca
ENSORLG00000027725	lsm5	55	59.302	ENSACIG00000019185	lsm5	96	59.302	Amphilophus_citrinellus
ENSORLG00000027725	lsm5	58	97.802	ENSAOCG00000001636	lsm5	100	97.802	Amphiprion_ocellaris
ENSORLG00000027725	lsm5	58	97.802	ENSAPEG00000008151	lsm5	100	97.802	Amphiprion_percula
ENSORLG00000027725	lsm5	53	96.341	ENSATEG00000020470	lsm5	100	60.440	Anabas_testudineus
ENSORLG00000027725	lsm5	58	72.527	ENSANAG00000037758	-	100	72.527	Aotus_nancymaae
ENSORLG00000027725	lsm5	58	93.407	ENSANAG00000034409	-	100	93.407	Aotus_nancymaae
ENSORLG00000027725	lsm5	58	90.000	ENSANAG00000024192	-	94	90.000	Aotus_nancymaae
ENSORLG00000027725	lsm5	55	97.674	ENSACLG00000012891	lsm5	98	97.674	Astatotilapia_calliptera
ENSORLG00000027725	lsm5	58	81.915	ENSAMXG00000035543	lsm5	100	81.915	Astyanax_mexicanus
ENSORLG00000027725	lsm5	58	93.407	ENSBTAG00000002332	LSM5	100	93.407	Bos_taurus
ENSORLG00000027725	lsm5	58	71.429	WBGene00003079	lsm-5	100	71.429	Caenorhabditis_elegans
ENSORLG00000027725	lsm5	65	87.255	ENSCJAG00000047379	LSM5	81	84.615	Callithrix_jacchus
ENSORLG00000027725	lsm5	58	81.111	ENSCJAG00000005678	-	100	81.111	Callithrix_jacchus
ENSORLG00000027725	lsm5	58	92.308	ENSCAFG00000019261	-	100	92.308	Canis_familiaris
ENSORLG00000027725	lsm5	58	93.407	ENSCAFG00020004946	LSM5	100	93.407	Canis_lupus_dingo
ENSORLG00000027725	lsm5	58	91.209	ENSCHIG00000004079	-	100	91.209	Capra_hircus
ENSORLG00000027725	lsm5	58	93.407	ENSCHIG00000024539	LSM5	100	93.407	Capra_hircus
ENSORLG00000027725	lsm5	58	93.407	ENSTSYG00000006449	-	100	93.407	Carlito_syrichta
ENSORLG00000027725	lsm5	58	68.132	ENSTSYG00000036637	-	100	68.132	Carlito_syrichta
ENSORLG00000027725	lsm5	58	75.824	ENSTSYG00000026530	-	91	75.824	Carlito_syrichta
ENSORLG00000027725	lsm5	58	81.319	ENSTSYG00000028728	-	100	81.319	Carlito_syrichta
ENSORLG00000027725	lsm5	58	93.407	ENSCPOG00000036386	LSM5	100	93.407	Cavia_porcellus
ENSORLG00000027725	lsm5	58	93.407	ENSCCAG00000037808	-	100	93.407	Cebus_capucinus
ENSORLG00000027725	lsm5	58	63.736	ENSCCAG00000037334	-	100	63.736	Cebus_capucinus
ENSORLG00000027725	lsm5	58	91.209	ENSCCAG00000032123	-	100	91.209	Cebus_capucinus
ENSORLG00000027725	lsm5	58	92.308	ENSCCAG00000000821	-	100	92.308	Cebus_capucinus
ENSORLG00000027725	lsm5	58	74.725	ENSCCAG00000032792	-	100	74.725	Cebus_capucinus
ENSORLG00000027725	lsm5	58	93.407	ENSCATG00000040218	LSM5	100	95.161	Cercocebus_atys
ENSORLG00000027725	lsm5	58	82.222	ENSCATG00000014790	-	95	90.909	Cercocebus_atys
ENSORLG00000027725	lsm5	58	79.121	ENSCLAG00000005062	-	90	79.121	Chinchilla_lanigera
ENSORLG00000027725	lsm5	58	93.407	ENSCLAG00000000202	LSM5	100	93.407	Chinchilla_lanigera
ENSORLG00000027725	lsm5	58	93.407	ENSCPBG00000013685	LSM5	100	93.407	Chrysemys_picta_bellii
ENSORLG00000027725	lsm5	55	84.884	ENSCING00000020625	-	97	84.884	Ciona_intestinalis
ENSORLG00000027725	lsm5	55	84.884	ENSCSAVG00000001439	-	98	84.884	Ciona_savignyi
ENSORLG00000027725	lsm5	58	93.407	ENSCANG00000039909	LSM5	100	95.161	Colobus_angolensis_palliatus
ENSORLG00000027725	lsm5	58	93.407	ENSCGRG00001015461	Lsm5	100	93.407	Cricetulus_griseus_chok1gshd
ENSORLG00000027725	lsm5	58	60.440	ENSCSEG00000015286	lsm5	100	60.440	Cynoglossus_semilaevis
ENSORLG00000027725	lsm5	58	96.703	ENSCVAG00000004262	lsm5	100	96.703	Cyprinodon_variegatus
ENSORLG00000027725	lsm5	58	94.505	ENSDARG00000071573	lsm5	100	96.774	Danio_rerio
ENSORLG00000027725	lsm5	56	83.908	ENSDNOG00000049495	-	96	83.908	Dasypus_novemcinctus
ENSORLG00000027725	lsm5	58	93.407	ENSDNOG00000034958	LSM5	100	93.407	Dasypus_novemcinctus
ENSORLG00000027725	lsm5	58	93.407	ENSDORG00000009422	Lsm5	100	93.407	Dipodomys_ordii
ENSORLG00000027725	lsm5	55	80.233	FBgn0035675	CG6610	95	80.233	Drosophila_melanogaster
ENSORLG00000027725	lsm5	58	71.111	ENSETEG00000001469	-	99	71.111	Echinops_telfairi
ENSORLG00000027725	lsm5	57	74.157	ENSETEG00000010651	-	99	74.157	Echinops_telfairi
ENSORLG00000027725	lsm5	57	62.921	ENSETEG00000000777	-	99	62.921	Echinops_telfairi
ENSORLG00000027725	lsm5	58	93.407	ENSETEG00000018068	LSM5	100	93.407	Echinops_telfairi
ENSORLG00000027725	lsm5	58	93.407	ENSEBUG00000008540	lsm5	100	93.407	Eptatretus_burgeri
ENSORLG00000027725	lsm5	58	93.407	ENSEASG00005003500	LSM5	100	93.407	Equus_asinus_asinus
ENSORLG00000027725	lsm5	58	79.121	ENSECAG00000018445	LSM5	100	79.121	Equus_caballus
ENSORLG00000027725	lsm5	58	95.604	ENSELUG00000007792	lsm5	100	95.604	Esox_lucius
ENSORLG00000027725	lsm5	58	93.407	ENSFCAG00000000230	LSM5	100	93.407	Felis_catus
ENSORLG00000027725	lsm5	58	93.407	ENSFDAG00000008767	LSM5	100	93.407	Fukomys_damarensis
ENSORLG00000027725	lsm5	53	67.073	ENSFDAG00000008685	-	97	67.073	Fukomys_damarensis
ENSORLG00000027725	lsm5	58	96.667	ENSGMOG00000018235	lsm5	100	96.667	Gadus_morhua
ENSORLG00000027725	lsm5	58	93.407	ENSGALG00000041625	LSM5	100	93.407	Gallus_gallus
ENSORLG00000027725	lsm5	58	96.703	ENSGACG00000005528	lsm5	100	96.703	Gasterosteus_aculeatus
ENSORLG00000027725	lsm5	58	93.407	ENSGAGG00000015593	LSM5	100	93.407	Gopherus_agassizii
ENSORLG00000027725	lsm5	58	93.407	ENSGGOG00000043469	LSM5	100	93.407	Gorilla_gorilla
ENSORLG00000027725	lsm5	55	97.674	ENSHBUG00000013773	lsm5	98	97.674	Haplochromis_burtoni
ENSORLG00000027725	lsm5	58	93.407	ENSHGLG00000011765	LSM5	100	93.407	Heterocephalus_glaber_female
ENSORLG00000027725	lsm5	58	90.110	ENSHGLG00100015610	LSM5	100	90.110	Heterocephalus_glaber_male
ENSORLG00000027725	lsm5	58	59.341	ENSHCOG00000008288	lsm5	100	59.341	Hippocampus_comes
ENSORLG00000027725	lsm5	58	94.505	ENSIPUG00000021095	LSM5	100	94.505	Ictalurus_punctatus
ENSORLG00000027725	lsm5	54	79.070	ENSSTOG00000033886	-	97	79.070	Ictidomys_tridecemlineatus
ENSORLG00000027725	lsm5	58	93.407	ENSSTOG00000012662	LSM5	100	93.407	Ictidomys_tridecemlineatus
ENSORLG00000027725	lsm5	51	87.342	ENSJJAG00000004475	-	100	87.342	Jaculus_jaculus
ENSORLG00000027725	lsm5	58	68.132	ENSJJAG00000016144	-	92	68.132	Jaculus_jaculus
ENSORLG00000027725	lsm5	58	91.209	ENSJJAG00000012145	-	100	91.209	Jaculus_jaculus
ENSORLG00000027725	lsm5	58	96.703	ENSKMAG00000021861	lsm5	100	96.703	Kryptolebias_marmoratus
ENSORLG00000027725	lsm5	54	94.048	ENSLBEG00000009235	LSM5	66	94.048	Labrus_bergylta
ENSORLG00000027725	lsm5	58	95.604	ENSLACG00000022448	LSM5	100	95.604	Latimeria_chalumnae
ENSORLG00000027725	lsm5	58	94.505	ENSLOCG00000012903	lsm5	100	94.505	Lepisosteus_oculatus
ENSORLG00000027725	lsm5	58	93.407	ENSLAFG00000029579	LSM5	100	93.407	Loxodonta_africana
ENSORLG00000027725	lsm5	58	68.132	ENSLAFG00000027938	-	100	68.132	Loxodonta_africana
ENSORLG00000027725	lsm5	58	91.209	ENSMFAG00000030152	-	100	91.209	Macaca_fascicularis
ENSORLG00000027725	lsm5	58	93.407	ENSMFAG00000038508	LSM5	100	93.407	Macaca_fascicularis
ENSORLG00000027725	lsm5	58	91.209	ENSMMUG00000030131	-	100	91.209	Macaca_mulatta
ENSORLG00000027725	lsm5	58	83.333	ENSMMUG00000039822	-	100	83.333	Macaca_mulatta
ENSORLG00000027725	lsm5	58	93.407	ENSMNEG00000015331	LSM5	100	95.161	Macaca_nemestrina
ENSORLG00000027725	lsm5	58	91.209	ENSMNEG00000037935	-	100	91.209	Macaca_nemestrina
ENSORLG00000027725	lsm5	57	82.022	ENSMLEG00000034037	-	100	82.022	Mandrillus_leucophaeus
ENSORLG00000027725	lsm5	58	93.407	ENSMLEG00000024945	LSM5	100	93.407	Mandrillus_leucophaeus
ENSORLG00000027725	lsm5	58	91.209	ENSMAMG00000012869	lsm5	100	91.209	Mastacembelus_armatus
ENSORLG00000027725	lsm5	55	97.674	ENSMZEG00005019554	lsm5	98	97.674	Maylandia_zebra
ENSORLG00000027725	lsm5	58	93.407	ENSMGAG00000012117	LSM5	100	93.407	Meleagris_gallopavo
ENSORLG00000027725	lsm5	58	92.308	ENSMAUG00000008132	-	100	92.308	Mesocricetus_auratus
ENSORLG00000027725	lsm5	58	93.407	ENSMAUG00000012222	Lsm5	100	93.407	Mesocricetus_auratus
ENSORLG00000027725	lsm5	58	72.222	ENSMICG00000033928	-	96	72.222	Microcebus_murinus
ENSORLG00000027725	lsm5	58	93.407	ENSMICG00000005353	LSM5	100	93.407	Microcebus_murinus
ENSORLG00000027725	lsm5	58	93.407	ENSMOCG00000012018	Lsm5	100	93.407	Microtus_ochrogaster
ENSORLG00000027725	lsm5	58	93.407	MGP_CAROLIEiJ_G0028421	Lsm5	100	93.407	Mus_caroli
ENSORLG00000027725	lsm5	58	93.407	ENSMUSG00000091625	Lsm5	100	93.407	Mus_musculus
ENSORLG00000027725	lsm5	58	93.407	MGP_PahariEiJ_G0022171	Lsm5	100	93.407	Mus_pahari
ENSORLG00000027725	lsm5	58	93.407	MGP_SPRETEiJ_G0029423	Lsm5	100	93.407	Mus_spretus
ENSORLG00000027725	lsm5	65	88.235	ENSMPUG00000005458	-	50	88.235	Mustela_putorius_furo
ENSORLG00000027725	lsm5	58	93.407	ENSMLUG00000017028	LSM5	100	93.407	Myotis_lucifugus
ENSORLG00000027725	lsm5	58	93.407	ENSNGAG00000024142	Lsm5	100	93.407	Nannospalax_galili
ENSORLG00000027725	lsm5	58	73.333	ENSNGAG00000022569	-	96	73.333	Nannospalax_galili
ENSORLG00000027725	lsm5	58	81.720	ENSNGAG00000017707	-	100	81.720	Nannospalax_galili
ENSORLG00000027725	lsm5	58	93.407	ENSNLEG00000015268	LSM5	100	93.407	Nomascus_leucogenys
ENSORLG00000027725	lsm5	58	93.407	ENSODEG00000008258	-	100	93.407	Octodon_degus
ENSORLG00000027725	lsm5	58	93.407	ENSODEG00000019072	-	100	93.407	Octodon_degus
ENSORLG00000027725	lsm5	58	93.407	ENSOCUG00000029043	LSM5	100	93.407	Oryctolagus_cuniculus
ENSORLG00000027725	lsm5	56	95.402	ENSORLG00020003019	lsm5	86	95.402	Oryzias_latipes_hni
ENSORLG00000027725	lsm5	58	100.000	ENSORLG00015003338	lsm5	100	100.000	Oryzias_latipes_hsok
ENSORLG00000027725	lsm5	58	98.901	ENSOMEG00000001078	lsm5	100	98.901	Oryzias_melastigma
ENSORLG00000027725	lsm5	58	93.407	ENSOGAG00000013892	LSM5	100	93.407	Otolemur_garnettii
ENSORLG00000027725	lsm5	58	93.407	ENSOARG00000006944	LSM5	100	93.407	Ovis_aries
ENSORLG00000027725	lsm5	58	93.407	ENSPPAG00000003697	-	100	93.407	Pan_paniscus
ENSORLG00000027725	lsm5	58	93.407	ENSPPRG00000002550	LSM5	100	93.407	Panthera_pardus
ENSORLG00000027725	lsm5	58	93.407	ENSPTIG00000015604	LSM5	100	93.407	Panthera_tigris_altaica
ENSORLG00000027725	lsm5	58	76.923	ENSPTRG00000049488	-	100	79.121	Pan_troglodytes
ENSORLG00000027725	lsm5	58	93.407	ENSPTRG00000019057	LSM5	100	93.407	Pan_troglodytes
ENSORLG00000027725	lsm5	58	90.110	ENSPANG00000033477	-	100	90.110	Papio_anubis
ENSORLG00000027725	lsm5	58	83.333	ENSPANG00000032538	-	100	83.333	Papio_anubis
ENSORLG00000027725	lsm5	58	93.407	ENSPANG00000032179	-	100	93.407	Papio_anubis
ENSORLG00000027725	lsm5	58	96.703	ENSPKIG00000011910	lsm5	100	96.703	Paramormyrops_kingsleyae
ENSORLG00000027725	lsm5	58	65.934	ENSPEMG00000022375	-	100	65.934	Peromyscus_maniculatus_bairdii
ENSORLG00000027725	lsm5	58	96.703	ENSPFOG00000001433	lsm5	100	96.703	Poecilia_formosa
ENSORLG00000027725	lsm5	58	96.703	ENSPLAG00000009665	lsm5	100	96.703	Poecilia_latipinna
ENSORLG00000027725	lsm5	58	96.703	ENSPMEG00000022265	lsm5	100	96.703	Poecilia_mexicana
ENSORLG00000027725	lsm5	58	90.110	ENSPPYG00000017661	LSM5	100	90.110	Pongo_abelii
ENSORLG00000027725	lsm5	52	95.062	ENSPCAG00000013740	LSM5	100	95.062	Procavia_capensis
ENSORLG00000027725	lsm5	58	93.407	ENSPVAG00000009786	LSM5	100	93.407	Pteropus_vampyrus
ENSORLG00000027725	lsm5	55	97.674	ENSPNYG00000022236	lsm5	98	97.674	Pundamilia_nyererei
ENSORLG00000027725	lsm5	58	94.505	ENSPNAG00000001887	lsm5	100	94.505	Pygocentrus_nattereri
ENSORLG00000027725	lsm5	58	93.407	ENSRNOG00000042126	Lsm5	100	93.407	Rattus_norvegicus
ENSORLG00000027725	lsm5	58	90.217	ENSRNOG00000027305	AABR07065089.1	100	90.217	Rattus_norvegicus
ENSORLG00000027725	lsm5	58	93.407	ENSRBIG00000027803	-	100	95.161	Rhinopithecus_bieti
ENSORLG00000027725	lsm5	58	93.407	ENSRBIG00000030714	-	100	93.407	Rhinopithecus_bieti
ENSORLG00000027725	lsm5	58	92.308	ENSRBIG00000024431	-	100	92.308	Rhinopithecus_bieti
ENSORLG00000027725	lsm5	58	93.407	ENSRBIG00000030340	-	100	93.407	Rhinopithecus_bieti
ENSORLG00000027725	lsm5	58	93.407	ENSRROG00000042782	-	100	95.161	Rhinopithecus_roxellana
ENSORLG00000027725	lsm5	58	93.407	ENSRROG00000004655	-	100	93.407	Rhinopithecus_roxellana
ENSORLG00000027725	lsm5	58	93.407	ENSRROG00000023884	-	100	93.407	Rhinopithecus_roxellana
ENSORLG00000027725	lsm5	58	71.429	ENSSBOG00000034794	-	100	71.429	Saimiri_boliviensis_boliviensis
ENSORLG00000027725	lsm5	58	91.209	ENSSBOG00000019124	-	100	91.209	Saimiri_boliviensis_boliviensis
ENSORLG00000027725	lsm5	58	93.407	ENSSBOG00000012312	LSM5	100	93.407	Saimiri_boliviensis_boliviensis
ENSORLG00000027725	lsm5	58	96.703	ENSSFOG00015010099	lsm5	100	96.703	Scleropages_formosus
ENSORLG00000027725	lsm5	58	60.440	ENSSMAG00000007895	lsm5	100	60.440	Scophthalmus_maximus
ENSORLG00000027725	lsm5	58	97.802	ENSSLDG00000025242	lsm5	100	97.802	Seriola_lalandi_dorsalis
ENSORLG00000027725	lsm5	58	64.835	ENSSARG00000003330	LSM5	100	64.835	Sorex_araneus
ENSORLG00000027725	lsm5	58	91.209	ENSSPUG00000002690	LSM5	100	93.548	Sphenodon_punctatus
ENSORLG00000027725	lsm5	58	61.538	ENSSPAG00000005435	lsm5	100	61.538	Stegastes_partitus
ENSORLG00000027725	lsm5	58	93.407	ENSSSCG00000026064	-	100	93.407	Sus_scrofa
ENSORLG00000027725	lsm5	58	92.308	ENSTGUG00000017539	LSM5	100	92.308	Taeniopygia_guttata
ENSORLG00000027725	lsm5	53	87.500	ENSTRUG00000017749	lsm5	66	87.500	Takifugu_rubripes
ENSORLG00000027725	lsm5	58	94.505	ENSTNIG00000008695	lsm5	100	94.505	Tetraodon_nigroviridis
ENSORLG00000027725	lsm5	58	93.407	ENSTBEG00000004876	LSM5	100	93.407	Tupaia_belangeri
ENSORLG00000027725	lsm5	58	93.407	ENSTTRG00000004237	LSM5	100	93.407	Tursiops_truncatus
ENSORLG00000027725	lsm5	58	93.333	ENSUMAG00000002625	LSM5	65	93.333	Ursus_maritimus
ENSORLG00000027725	lsm5	58	93.407	ENSVPAG00000009985	LSM5	100	93.407	Vicugna_pacos
ENSORLG00000027725	lsm5	58	93.407	ENSVVUG00000021311	LSM5	100	93.407	Vulpes_vulpes
ENSORLG00000027725	lsm5	53	93.902	ENSXETG00000026465	lsm5	100	93.902	Xenopus_tropicalis
ENSORLG00000027725	lsm5	58	96.703	ENSXMAG00000029988	lsm5	100	96.703	Xiphophorus_maculatus