EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSORLG00000027900 (Gene tree)
Gene ID
101157012
Gene Symbol
pabpn1
Alias
-
Full Name
poly(A) binding protein nuclear 1
Gene Type
protein_coding
Species
Oryzias_latipes
Status
putative
Strand
Minus strand
Length
15764 bases
Position
chr20:12330867-12346630
Accession
101157012
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00000007717RRM_1PF00076.222.7e-1711
ENSORLP00000044531RRM_1PF00076.224e-1711
ENSORLP00000039508RRM_1PF00076.224.2e-1711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00000033046-4975XM_023950077ENSORLP00000039508292 (aa)XP_023805845-
ENSORLT00000045500-4951XM_023950076ENSORLP00000044531284 (aa)XP_023805844UPI000CE1D22A
ENSORLT00000007718-1472-ENSORLP00000007717235 (aa)-H2LNT8
Gene Model
Click here to download ENSORLG00000027900's gene model file
Pathways
Pathway IDPathway NameSource
ola03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000027900's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSORLG00000027900pabpn17956.771ENSORLG00000026560PABPN1L7952.727
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00000027900pabpn17981.383ENSG00000258643BCL2L2-PABPN15384.831Homo_sapiens
ENSORLG00000027900pabpn18479.902ENSG00000100836PABPN19282.692Homo_sapiens
ENSORLG00000027900pabpn110097.887ENSAPOG00000016425pabpn110097.887Acanthochromis_polyacanthus
ENSORLG00000027900pabpn17981.383ENSAMEG00000007048BCL2L2-PABPN19981.383Ailuropoda_melanoleuca
ENSORLG00000027900pabpn110096.503ENSACIG00000021744pabpn19898.844Amphilophus_citrinellus
ENSORLG00000027900pabpn19098.113ENSAOCG00000015805pabpn19997.817Amphiprion_ocellaris
ENSORLG00000027900pabpn19098.113ENSAPEG00000009623pabpn19997.817Amphiprion_percula
ENSORLG00000027900pabpn19098.585ENSATEG00000020531pabpn19998.253Anabas_testudineus
ENSORLG00000027900pabpn17186.628ENSACAG00000006185-7379.710Anolis_carolinensis
ENSORLG00000027900pabpn18281.122ENSANAG00000024513-8373.418Aotus_nancymaae
ENSORLG00000027900pabpn110096.167ENSACLG00000016374pabpn110096.167Astatotilapia_calliptera
ENSORLG00000027900pabpn19895.238ENSAMXG00000000452pabpn19997.391Astyanax_mexicanus
ENSORLG00000027900pabpn18281.122ENSBTAG00000006884PABPN18369.636Bos_taurus
ENSORLG00000027900pabpn17385.057ENSBTAG00000050594-7483.333Bos_taurus
ENSORLG00000027900pabpn18080.000ENSBTAG00000053753-7180.000Bos_taurus
ENSORLG00000027900pabpn16158.904WBGene00003904pabp-28654.696Caenorhabditis_elegans
ENSORLG00000027900pabpn16977.108ENSCJAG00000004407-8377.108Callithrix_jacchus
ENSORLG00000027900pabpn19773.593ENSCJAG00000007960-8374.026Callithrix_jacchus
ENSORLG00000027900pabpn18479.902ENSCAFG00000011482PABPN18568.582Canis_familiaris
ENSORLG00000027900pabpn18479.902ENSCAFG00020006651-6482.741Canis_lupus_dingo
ENSORLG00000027900pabpn18479.902ENSCAFG00020007298-6482.741Canis_lupus_dingo
ENSORLG00000027900pabpn18479.902ENSCHIG00000012184PABPN16482.741Capra_hircus
ENSORLG00000027900pabpn17981.383ENSTSYG00000033996BCL2L2-PABPN19378.916Carlito_syrichta
ENSORLG00000027900pabpn15784.444ENSCAPG00000009461-9982.734Cavia_aperea
ENSORLG00000027900pabpn18479.412ENSCPOG00000025574PABPN16782.039Cavia_porcellus
ENSORLG00000027900pabpn19773.593ENSCCAG00000033954BCL2L2-PABPN18374.026Cebus_capucinus
ENSORLG00000027900pabpn19773.593ENSCATG00000038536BCL2L2-PABPN18374.026Cercocebus_atys
ENSORLG00000027900pabpn18359.292ENSCLAG00000012423PABPN15282.734Chinchilla_lanigera
ENSORLG00000027900pabpn18478.431ENSCSAG00000016036PABPN18567.050Chlorocebus_sabaeus
ENSORLG00000027900pabpn18770.192ENSCHOG00000004798BCL2L2-PABPN18770.192Choloepus_hoffmanni
ENSORLG00000027900pabpn16980.723ENSCPBG00000026060-9380.723Chrysemys_picta_bellii
ENSORLG00000027900pabpn17959.223ENSCING00000012468-8464.000Ciona_intestinalis
ENSORLG00000027900pabpn16561.272ENSCSAVG00000002001-8068.889Ciona_savignyi
ENSORLG00000027900pabpn17981.383ENSCANG00000009750BCL2L2-PABPN19378.916Colobus_angolensis_palliatus
ENSORLG00000027900pabpn17871.809ENSCANG00000030980-8364.035Colobus_angolensis_palliatus
ENSORLG00000027900pabpn18479.412ENSCGRG00001019696Pabpn19378.313Cricetulus_griseus_chok1gshd
ENSORLG00000027900pabpn16291.156ENSCGRG00000011102Pabpn19191.156Cricetulus_griseus_crigri
ENSORLG00000027900pabpn19496.380ENSCSEG00000008774pabpn19996.507Cynoglossus_semilaevis
ENSORLG00000027900pabpn110093.878ENSCVAG00000003152pabpn110094.898Cyprinodon_variegatus
ENSORLG00000027900pabpn110095.423ENSDARG00000045373pabpn110096.818Danio_rerio
ENSORLG00000027900pabpn17256.213ENSDARG00000087996pabpn1l8659.184Danio_rerio
ENSORLG00000027900pabpn18479.902ENSDNOG00000023682PABPN16482.741Dasypus_novemcinctus
ENSORLG00000027900pabpn15682.707ENSDORG00000023928-8581.967Dipodomys_ordii
ENSORLG00000027900pabpn18380.100ENSDORG00000028966-6482.234Dipodomys_ordii
ENSORLG00000027900pabpn19059.009FBgn0005648Pabp29759.009Drosophila_melanogaster
ENSORLG00000027900pabpn19371.806ENSEBUG00000002322pabpn19772.489Eptatretus_burgeri
ENSORLG00000027900pabpn18479.902ENSEASG00005011716PABPN16782.524Equus_asinus_asinus
ENSORLG00000027900pabpn18580.000ENSECAG00000011652PABPN16782.828Equus_caballus
ENSORLG00000027900pabpn17882.105ENSEEUG00000012973-6978.818Erinaceus_europaeus
ENSORLG00000027900pabpn19094.009ENSELUG00000022654pabpn19994.017Esox_lucius
ENSORLG00000027900pabpn18479.902ENSFCAG00000031922PABPN16482.741Felis_catus
ENSORLG00000027900pabpn16978.313ENSFDAG00000018381BCL2L2-PABPN19281.818Fukomys_damarensis
ENSORLG00000027900pabpn19096.698ENSFHEG00000007215pabpn19995.633Fundulus_heteroclitus
ENSORLG00000027900pabpn110091.579ENSGMOG00000003922pabpn110094.035Gadus_morhua
ENSORLG00000027900pabpn17483.708ENSGALG00000052930-6082.212Gallus_gallus
ENSORLG00000027900pabpn19894.828ENSGAFG00000017099pabpn19997.835Gambusia_affinis
ENSORLG00000027900pabpn110096.479ENSGACG00000002167pabpn110096.479Gasterosteus_aculeatus
ENSORLG00000027900pabpn18568.932ENSGGOG00000025919-9467.832Gorilla_gorilla
ENSORLG00000027900pabpn18667.980ENSGGOG00000039675-8963.830Gorilla_gorilla
ENSORLG00000027900pabpn19773.593ENSGGOG00000022683-8374.026Gorilla_gorilla
ENSORLG00000027900pabpn19098.585ENSHBUG00000019523pabpn19998.253Haplochromis_burtoni
ENSORLG00000027900pabpn16464.052ENSHGLG00000009842-8764.052Heterocephalus_glaber_female
ENSORLG00000027900pabpn18479.412ENSHGLG00000002927-9291.156Heterocephalus_glaber_female
ENSORLG00000027900pabpn17774.468ENSHGLG00000018588-7074.468Heterocephalus_glaber_female
ENSORLG00000027900pabpn15481.395ENSHGLG00100018935-8874.684Heterocephalus_glaber_male
ENSORLG00000027900pabpn17285.632ENSHGLG00100006673-9291.156Heterocephalus_glaber_male
ENSORLG00000027900pabpn17774.468ENSHGLG00100015565-8765.066Heterocephalus_glaber_male
ENSORLG00000027900pabpn19794.737ENSHCOG00000004655pabpn19997.380Hippocampus_comes
ENSORLG00000027900pabpn19096.698ENSIPUG00000008085PABPN19996.070Ictalurus_punctatus
ENSORLG00000027900pabpn19088.679ENSIPUG00000000180-9888.210Ictalurus_punctatus
ENSORLG00000027900pabpn16978.916ENSSTOG00000029847BCL2L2-PABPN19378.916Ictidomys_tridecemlineatus
ENSORLG00000027900pabpn16978.916ENSJJAG00000023507Gm205219378.916Jaculus_jaculus
ENSORLG00000027900pabpn110097.895ENSKMAG00000018748pabpn110097.895Kryptolebias_marmoratus
ENSORLG00000027900pabpn110097.887ENSLBEG00000027266pabpn110097.887Labrus_bergylta
ENSORLG00000027900pabpn17488.136ENSLACG00000000646pabpn19477.273Latimeria_chalumnae
ENSORLG00000027900pabpn110091.228ENSLOCG00000000796pabpn110091.579Lepisosteus_oculatus
ENSORLG00000027900pabpn17967.539ENSLOCG00000004694pabpn1l9366.337Lepisosteus_oculatus
ENSORLG00000027900pabpn16379.195ENSLAFG00000031227-9879.195Loxodonta_africana
ENSORLG00000027900pabpn15475.000ENSMFAG00000031355-9275.000Macaca_fascicularis
ENSORLG00000027900pabpn17981.383ENSMFAG00000032183BCL2L2-PABPN19378.916Macaca_fascicularis
ENSORLG00000027900pabpn17981.383ENSMMUG00000014747BCL2L2-PABPN19978.621Macaca_mulatta
ENSORLG00000027900pabpn18465.517ENSMMUG00000048382-6965.865Macaca_mulatta
ENSORLG00000027900pabpn17765.946ENSMNEG00000035750-9275.000Macaca_nemestrina
ENSORLG00000027900pabpn19773.593ENSMNEG00000045065BCL2L2-PABPN18374.026Macaca_nemestrina
ENSORLG00000027900pabpn17981.383ENSMLEG00000043862BCL2L2-PABPN19378.916Mandrillus_leucophaeus
ENSORLG00000027900pabpn16566.879ENSMLEG00000034623-9273.485Mandrillus_leucophaeus
ENSORLG00000027900pabpn110096.575ENSMAMG00000007979pabpn110096.575Mastacembelus_armatus
ENSORLG00000027900pabpn110097.887ENSMZEG00005011904pabpn110097.887Maylandia_zebra
ENSORLG00000027900pabpn18479.412ENSMAUG00000007383Gm205216682.234Mesocricetus_auratus
ENSORLG00000027900pabpn19774.026ENSMICG00000010002BCL2L2-PABPN18374.026Microcebus_murinus
ENSORLG00000027900pabpn18478.922ENSMOCG00000018557Gm205219091.156Microtus_ochrogaster
ENSORLG00000027900pabpn110098.239ENSMMOG00000005405pabpn110098.239Mola_mola
ENSORLG00000027900pabpn18378.000ENSMODG00000004535-6782.039Monodelphis_domestica
ENSORLG00000027900pabpn110097.535ENSMALG00000019612pabpn110097.535Monopterus_albus
ENSORLG00000027900pabpn17979.787MGP_CAROLIEiJ_G0019276Gm205215383.146Mus_caroli
ENSORLG00000027900pabpn18478.431MGP_CAROLIEiJ_G0019277Pabpn19090.476Mus_caroli
ENSORLG00000027900pabpn17980.319ENSMUSG00000092232Gm205215383.708Mus_musculus
ENSORLG00000027900pabpn18478.922ENSMUSG00000022194Pabpn19090.476Mus_musculus
ENSORLG00000027900pabpn17980.319MGP_PahariEiJ_G0030294Gm205215383.708Mus_pahari
ENSORLG00000027900pabpn18478.922MGP_PahariEiJ_G0030295Pabpn110095.238Mus_pahari
ENSORLG00000027900pabpn18478.922MGP_SPRETEiJ_G0020166Pabpn19090.476Mus_spretus
ENSORLG00000027900pabpn17980.319MGP_SPRETEiJ_G0020165Gm205215383.708Mus_spretus
ENSORLG00000027900pabpn16384.211ENSMPUG00000006775-9282.692Mustela_putorius_furo
ENSORLG00000027900pabpn17980.319ENSMLUG00000003800-9980.319Myotis_lucifugus
ENSORLG00000027900pabpn17780.749ENSMLUG00000012452-6879.227Myotis_lucifugus
ENSORLG00000027900pabpn18278.571ENSMLUG00000028677-8470.513Myotis_lucifugus
ENSORLG00000027900pabpn17981.383ENSNGAG00000019529Gm205215384.831Nannospalax_galili
ENSORLG00000027900pabpn110098.239ENSNBRG00000023955pabpn110098.239Neolamprologus_brichardi
ENSORLG00000027900pabpn17670.588ENSNLEG00000030598-7770.526Nomascus_leucogenys
ENSORLG00000027900pabpn15961.151ENSNLEG00000035292-9861.151Nomascus_leucogenys
ENSORLG00000027900pabpn18479.902ENSNLEG00000015007-7082.741Nomascus_leucogenys
ENSORLG00000027900pabpn17470.621ENSODEG00000011555-8869.277Octodon_degus
ENSORLG00000027900pabpn18479.412ENSODEG00000002083BCL2L2-PABPN16482.234Octodon_degus
ENSORLG00000027900pabpn18173.096ENSODEG00000003739-8763.821Octodon_degus
ENSORLG00000027900pabpn110098.239ENSONIG00000008112pabpn110098.239Oreochromis_niloticus
ENSORLG00000027900pabpn16180.690ENSOANG00000009218-9980.690Ornithorhynchus_anatinus
ENSORLG00000027900pabpn18479.412ENSOCUG00000016174PABPN17282.234Oryctolagus_cuniculus
ENSORLG00000027900pabpn1100100.000ENSORLG00020004681pabpn1100100.000Oryzias_latipes_hni
ENSORLG00000027900pabpn1100100.000ENSORLG00015000018pabpn1100100.000Oryzias_latipes_hsok
ENSORLG00000027900pabpn110099.296ENSOMEG00000016618pabpn110099.296Oryzias_melastigma
ENSORLG00000027900pabpn18479.902ENSOGAG00000008710PABPN16482.741Otolemur_garnettii
ENSORLG00000027900pabpn17981.383ENSOARG00000019336BCL2L2-PABPN15281.383Ovis_aries
ENSORLG00000027900pabpn16467.949ENSPPAG00000039421-8867.949Pan_paniscus
ENSORLG00000027900pabpn17981.383ENSPPAG00000028984BCL2L2-PABPN19282.692Pan_paniscus
ENSORLG00000027900pabpn18479.902ENSPPRG00000010567PABPN16482.741Panthera_pardus
ENSORLG00000027900pabpn16978.916ENSPTIG00000001063BCL2L2-PABPN19378.916Panthera_tigris_altaica
ENSORLG00000027900pabpn19773.593ENSPTRG00000006167BCL2L28374.026Pan_troglodytes
ENSORLG00000027900pabpn19761.572ENSPTRG00000047273-9158.704Pan_troglodytes
ENSORLG00000027900pabpn18266.837ENSPANG00000023326-9275.758Papio_anubis
ENSORLG00000027900pabpn19773.593ENSPANG00000021100BCL2L2-PABPN18374.026Papio_anubis
ENSORLG00000027900pabpn110089.161ENSPKIG00000018052pabpn19994.783Paramormyrops_kingsleyae
ENSORLG00000027900pabpn110095.070ENSPKIG00000008144-10095.070Paramormyrops_kingsleyae
ENSORLG00000027900pabpn17069.512ENSPKIG00000008340pabpn1l8667.039Paramormyrops_kingsleyae
ENSORLG00000027900pabpn15777.444ENSPSIG00000011959-9477.444Pelodiscus_sinensis
ENSORLG00000027900pabpn110092.606ENSPMGG00000022027pabpn110092.606Periophthalmus_magnuspinnatus
ENSORLG00000027900pabpn18479.412ENSPEMG00000008332Gm205218991.156Peromyscus_maniculatus_bairdii
ENSORLG00000027900pabpn17875.269ENSPMAG00000006212pabpn19766.805Petromyzon_marinus
ENSORLG00000027900pabpn18477.340ENSPCIG00000027751-8567.816Phascolarctos_cinereus
ENSORLG00000027900pabpn110096.599ENSPFOG00000010351pabpn110096.599Poecilia_formosa
ENSORLG00000027900pabpn110097.279ENSPLAG00000022696pabpn110097.279Poecilia_latipinna
ENSORLG00000027900pabpn19095.327ENSPMEG00000020856pabpn19996.537Poecilia_mexicana
ENSORLG00000027900pabpn110096.853ENSPREG00000011278pabpn110096.853Poecilia_reticulata
ENSORLG00000027900pabpn17884.211ENSPPYG00000005663PABPN16983.938Pongo_abelii
ENSORLG00000027900pabpn17869.792ENSPCAG00000005902PABPN16669.744Procavia_capensis
ENSORLG00000027900pabpn19774.026ENSPCOG00000028047BCL2L2-PABPN18374.026Propithecus_coquereli
ENSORLG00000027900pabpn18378.641ENSPVAG00000005270PABPN16878.641Pteropus_vampyrus
ENSORLG00000027900pabpn19098.585ENSPNYG00000013182pabpn19998.253Pundamilia_nyererei
ENSORLG00000027900pabpn110095.423ENSPNAG00000023526pabpn19997.380Pygocentrus_nattereri
ENSORLG00000027900pabpn16769.620ENSPNAG00000021666pabpn1l9362.562Pygocentrus_nattereri
ENSORLG00000027900pabpn18479.412ENSRNOG00000042195Pabpn16582.234Rattus_norvegicus
ENSORLG00000027900pabpn17286.207ENSRBIG00000040762BCL2L2-PABPN15486.207Rhinopithecus_bieti
ENSORLG00000027900pabpn18769.524ENSRBIG00000039547-7667.633Rhinopithecus_bieti
ENSORLG00000027900pabpn17775.401ENSRBIG00000042811-8771.220Rhinopithecus_bieti
ENSORLG00000027900pabpn17286.207ENSRROG00000045535BCL2L2-PABPN19378.916Rhinopithecus_roxellana
ENSORLG00000027900pabpn18669.756ENSRROG00000040409-7667.633Rhinopithecus_roxellana
ENSORLG00000027900pabpn18366.990ENSRROG00000036409-8357.252Rhinopithecus_roxellana
ENSORLG00000027900pabpn17976.119ENSSBOG00000026930BCL2L2-PABPN19282.692Saimiri_boliviensis_boliviensis
ENSORLG00000027900pabpn19660.086ENSSHAG00000007707-9757.511Sarcophilus_harrisii
ENSORLG00000027900pabpn17978.610ENSSHAG00000014841-8680.851Sarcophilus_harrisii
ENSORLG00000027900pabpn110088.772ENSSFOG00015012565pabpn110088.772Scleropages_formosus
ENSORLG00000027900pabpn16073.944ENSSFOG00015015833pabpn1l8466.120Scleropages_formosus
ENSORLG00000027900pabpn19095.755ENSSFOG00015014718pabpn19995.197Scleropages_formosus
ENSORLG00000027900pabpn110097.535ENSSMAG00000020157pabpn110097.535Scophthalmus_maximus
ENSORLG00000027900pabpn110098.630ENSSDUG00000020582pabpn110098.630Seriola_dumerili
ENSORLG00000027900pabpn19098.585ENSSLDG00000007118pabpn19998.253Seriola_lalandi_dorsalis
ENSORLG00000027900pabpn16186.301ENSSPUG00000018308-9380.723Sphenodon_punctatus
ENSORLG00000027900pabpn110097.544ENSSPAG00000021658pabpn110097.544Stegastes_partitus
ENSORLG00000027900pabpn17867.196ENSSSCG00000034805-8454.936Sus_scrofa
ENSORLG00000027900pabpn18479.902ENSSSCG00000002023PABPN16782.524Sus_scrofa
ENSORLG00000027900pabpn110096.479ENSTRUG00000023664pabpn110096.479Takifugu_rubripes
ENSORLG00000027900pabpn18697.525ENSTNIG00000005369pabpn19497.525Tetraodon_nigroviridis
ENSORLG00000027900pabpn18479.902ENSUAMG00000024460PABPN16482.741Ursus_americanus
ENSORLG00000027900pabpn17981.383ENSUMAG00000014288BCL2L2-PABPN15682.162Ursus_maritimus
ENSORLG00000027900pabpn17981.383ENSVVUG00000019912BCL2L2-PABPN17580.208Vulpes_vulpes
ENSORLG00000027900pabpn17786.559ENSXETG00000014597pabpn16884.000Xenopus_tropicalis
ENSORLG00000027900pabpn16581.935ENSXCOG00000005158pabpn19684.884Xiphophorus_couchianus
ENSORLG00000027900pabpn110097.279ENSXMAG00000006196pabpn110097.279Xiphophorus_maculatus

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