EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000028798 (Gene tree)
Gene ID: 101158922
Gene Symbol: rbm17
Alias: -
Full Name: RNA binding motif protein 17
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 15950 bases
Position: chr23:3088344-3104293
Accession: 101158922
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000011750	RRM_1	PF00076.22	4e-05	1	1
ENSORLP00000041109	RRM_1	PF00076.22	4.5e-05	1	1
ENSORLP00000011750	G-patch	PF01585.23	4.6e-13	1	1
ENSORLP00000041109	G-patch	PF01585.23	5.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000039089	-	3801	XM_023952355	ENSORLP00000041109	419 (aa)	XP_023808123	UPI000CE1976A
ENSORLT00000011751	-	1185	-	ENSORLP00000011750	394 (aa)	-	H2M027

Gene Model

Click here to download ENSORLG00000028798's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000028798's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000028798	rbm17	100	80.344	ENSG00000134453	RBM17	100	79.717	Homo_sapiens
ENSORLG00000028798	rbm17	99	93.765	ENSAPOG00000007101	rbm17	99	93.765	Acanthochromis_polyacanthus
ENSORLG00000028798	rbm17	100	80.590	ENSAMEG00000002107	RBM17	100	79.953	Ailuropoda_melanoleuca
ENSORLG00000028798	rbm17	100	90.864	ENSACIG00000006251	rbm17	100	90.617	Amphilophus_citrinellus
ENSORLG00000028798	rbm17	100	93.824	ENSAOCG00000014892	rbm17	100	93.824	Amphiprion_ocellaris
ENSORLG00000028798	rbm17	100	93.824	ENSAPEG00000022779	rbm17	100	93.824	Amphiprion_percula
ENSORLG00000028798	rbm17	100	92.399	ENSATEG00000004406	rbm17	100	92.399	Anabas_testudineus
ENSORLG00000028798	rbm17	100	80.882	ENSAPLG00000004190	RBM17	100	80.471	Anas_platyrhynchos
ENSORLG00000028798	rbm17	90	77.635	ENSACAG00000005418	RBM17	99	77.635	Anolis_carolinensis
ENSORLG00000028798	rbm17	100	71.960	ENSANAG00000019330	-	95	87.931	Aotus_nancymaae
ENSORLG00000028798	rbm17	100	80.835	ENSANAG00000030127	RBM17	100	87.097	Aotus_nancymaae
ENSORLG00000028798	rbm17	100	92.191	ENSACLG00000003928	rbm17	100	92.191	Astatotilapia_calliptera
ENSORLG00000028798	rbm17	100	81.797	ENSAMXG00000005853	rbm17	100	83.688	Astyanax_mexicanus
ENSORLG00000028798	rbm17	100	80.590	ENSBTAG00000021951	RBM17	100	79.953	Bos_taurus
ENSORLG00000028798	rbm17	100	79.361	ENSBTAG00000011094	-	100	78.774	Bos_taurus
ENSORLG00000028798	rbm17	75	33.436	WBGene00010233	F58B3.7	97	31.250	Caenorhabditis_elegans
ENSORLG00000028798	rbm17	100	80.835	ENSCJAG00000020573	RBM17	100	80.605	Callithrix_jacchus
ENSORLG00000028798	rbm17	100	80.590	ENSCAFG00000005206	RBM17	100	79.953	Canis_familiaris
ENSORLG00000028798	rbm17	100	80.353	ENSCAFG00020005420	RBM17	100	80.353	Canis_lupus_dingo
ENSORLG00000028798	rbm17	100	80.590	ENSCHIG00000023204	-	100	80.101	Capra_hircus
ENSORLG00000028798	rbm17	100	78.378	ENSCHIG00000019921	-	100	76.651	Capra_hircus
ENSORLG00000028798	rbm17	100	80.000	ENSTSYG00000001165	RBM17	99	90.678	Carlito_syrichta
ENSORLG00000028798	rbm17	96	62.010	ENSCAPG00000006275	RBM17	100	67.590	Cavia_aperea
ENSORLG00000028798	rbm17	100	80.392	ENSCPOG00000005679	RBM17	99	79.500	Cavia_porcellus
ENSORLG00000028798	rbm17	100	80.835	ENSCCAG00000018655	RBM17	100	87.097	Cebus_capucinus
ENSORLG00000028798	rbm17	100	80.344	ENSCATG00000041566	RBM17	97	90.000	Cercocebus_atys
ENSORLG00000028798	rbm17	100	80.189	ENSCLAG00000012195	RBM17	99	80.189	Chinchilla_lanigera
ENSORLG00000028798	rbm17	100	80.344	ENSCSAG00000013564	RBM17	100	79.717	Chlorocebus_sabaeus
ENSORLG00000028798	rbm17	93	63.868	ENSCHOG00000005131	RBM17	100	63.868	Choloepus_hoffmanni
ENSORLG00000028798	rbm17	100	80.637	ENSCPBG00000019836	RBM17	100	80.000	Chrysemys_picta_bellii
ENSORLG00000028798	rbm17	100	46.934	ENSCSAVG00000008782	-	100	45.626	Ciona_savignyi
ENSORLG00000028798	rbm17	97	74.352	ENSCANG00000023715	-	99	71.290	Colobus_angolensis_palliatus
ENSORLG00000028798	rbm17	100	80.098	ENSCANG00000030987	RBM17	97	90.000	Colobus_angolensis_palliatus
ENSORLG00000028798	rbm17	100	65.586	ENSCGRG00001009256	-	100	62.708	Cricetulus_griseus_chok1gshd
ENSORLG00000028798	rbm17	100	80.189	ENSCGRG00001013842	Rbm17	100	80.189	Cricetulus_griseus_chok1gshd
ENSORLG00000028798	rbm17	100	80.189	ENSCGRG00000006907	Rbm17	100	80.189	Cricetulus_griseus_crigri
ENSORLG00000028798	rbm17	100	86.730	ENSCSEG00000018164	rbm17	100	86.730	Cynoglossus_semilaevis
ENSORLG00000028798	rbm17	100	87.121	ENSCVAG00000002476	rbm17	100	87.121	Cyprinodon_variegatus
ENSORLG00000028798	rbm17	100	79.812	ENSDARG00000031346	rbm17	100	79.812	Danio_rerio
ENSORLG00000028798	rbm17	100	80.344	ENSDNOG00000035920	RBM17	100	79.717	Dasypus_novemcinctus
ENSORLG00000028798	rbm17	99	37.445	FBgn0086683	Spf45	99	37.778	Drosophila_melanogaster
ENSORLG00000028798	rbm17	87	85.782	ENSETEG00000006642	RBM17	86	85.782	Echinops_telfairi
ENSORLG00000028798	rbm17	63	69.048	ENSEBUG00000010253	rbm17	84	69.048	Eptatretus_burgeri
ENSORLG00000028798	rbm17	92	77.926	ENSEASG00005009236	-	100	77.926	Equus_asinus_asinus
ENSORLG00000028798	rbm17	100	79.302	ENSEASG00005019205	-	100	79.052	Equus_asinus_asinus
ENSORLG00000028798	rbm17	100	71.007	ENSECAG00000001379	-	100	71.007	Equus_caballus
ENSORLG00000028798	rbm17	100	71.285	ENSECAG00000008939	RBM17	100	71.537	Equus_caballus
ENSORLG00000028798	rbm17	86	63.215	ENSEEUG00000013077	RBM17	100	61.853	Erinaceus_europaeus
ENSORLG00000028798	rbm17	100	83.916	ENSELUG00000006440	rbm17	100	83.916	Esox_lucius
ENSORLG00000028798	rbm17	100	80.590	ENSFCAG00000031988	RBM17	100	79.953	Felis_catus
ENSORLG00000028798	rbm17	100	79.657	ENSFALG00000001790	RBM17	100	79.059	Ficedula_albicollis
ENSORLG00000028798	rbm17	100	80.189	ENSFDAG00000007470	RBM17	100	80.189	Fukomys_damarensis
ENSORLG00000028798	rbm17	100	90.974	ENSFHEG00000001266	rbm17	100	89.486	Fundulus_heteroclitus
ENSORLG00000028798	rbm17	99	80.952	ENSGMOG00000008438	rbm17	100	80.952	Gadus_morhua
ENSORLG00000028798	rbm17	100	81.127	ENSGALG00000006332	RBM17	100	80.471	Gallus_gallus
ENSORLG00000028798	rbm17	100	89.924	ENSGAFG00000019879	rbm17	100	89.899	Gambusia_affinis
ENSORLG00000028798	rbm17	99	88.599	ENSGACG00000019174	rbm17	99	88.599	Gasterosteus_aculeatus
ENSORLG00000028798	rbm17	100	80.637	ENSGAGG00000019906	RBM17	100	80.000	Gopherus_agassizii
ENSORLG00000028798	rbm17	100	93.112	ENSHBUG00000016624	rbm17	100	93.112	Haplochromis_burtoni
ENSORLG00000028798	rbm17	100	80.189	ENSHGLG00000011580	RBM17	100	80.189	Heterocephalus_glaber_female
ENSORLG00000028798	rbm17	100	66.667	ENSHGLG00100010556	-	100	62.469	Heterocephalus_glaber_male
ENSORLG00000028798	rbm17	100	80.189	ENSHGLG00100010460	RBM17	100	80.189	Heterocephalus_glaber_male
ENSORLG00000028798	rbm17	99	87.351	ENSHCOG00000010865	rbm17	100	87.351	Hippocampus_comes
ENSORLG00000028798	rbm17	100	80.597	ENSIPUG00000007699	Rbm17	100	81.176	Ictalurus_punctatus
ENSORLG00000028798	rbm17	100	80.189	ENSSTOG00000013591	RBM17	100	80.189	Ictidomys_tridecemlineatus
ENSORLG00000028798	rbm17	100	80.189	ENSJJAG00000022886	Rbm17	100	80.189	Jaculus_jaculus
ENSORLG00000028798	rbm17	100	58.962	ENSJJAG00000000993	-	100	57.746	Jaculus_jaculus
ENSORLG00000028798	rbm17	100	90.736	ENSKMAG00000021400	rbm17	100	90.736	Kryptolebias_marmoratus
ENSORLG00000028798	rbm17	100	90.499	ENSLBEG00000000881	rbm17	100	90.499	Labrus_bergylta
ENSORLG00000028798	rbm17	99	65.187	ENSLACG00000017297	RBM17	99	65.187	Latimeria_chalumnae
ENSORLG00000028798	rbm17	100	80.186	ENSLOCG00000015659	rbm17	100	79.487	Lepisosteus_oculatus
ENSORLG00000028798	rbm17	100	79.953	ENSLAFG00000011629	RBM17	100	79.953	Loxodonta_africana
ENSORLG00000028798	rbm17	100	80.344	ENSMFAG00000035521	RBM17	97	90.000	Macaca_fascicularis
ENSORLG00000028798	rbm17	100	80.344	ENSMMUG00000015152	RBM17	97	90.000	Macaca_mulatta
ENSORLG00000028798	rbm17	100	80.344	ENSMNEG00000017264	RBM17	97	90.000	Macaca_nemestrina
ENSORLG00000028798	rbm17	100	80.344	ENSMLEG00000029340	RBM17	97	90.000	Mandrillus_leucophaeus
ENSORLG00000028798	rbm17	100	91.449	ENSMAMG00000000387	rbm17	100	91.449	Mastacembelus_armatus
ENSORLG00000028798	rbm17	100	93.112	ENSMZEG00005015179	rbm17	100	93.112	Maylandia_zebra
ENSORLG00000028798	rbm17	100	80.328	ENSMGAG00000003981	RBM17	100	80.328	Meleagris_gallopavo
ENSORLG00000028798	rbm17	100	80.189	ENSMAUG00000019247	Rbm17	100	80.189	Mesocricetus_auratus
ENSORLG00000028798	rbm17	100	80.000	ENSMICG00000003976	-	100	79.953	Microcebus_murinus
ENSORLG00000028798	rbm17	100	75.294	ENSMICG00000041489	-	100	75.294	Microcebus_murinus
ENSORLG00000028798	rbm17	100	80.189	ENSMOCG00000011847	Rbm17	100	80.189	Microtus_ochrogaster
ENSORLG00000028798	rbm17	92	64.960	ENSMOCG00000014517	-	99	65.676	Microtus_ochrogaster
ENSORLG00000028798	rbm17	100	84.352	ENSMMOG00000010264	rbm17	100	84.352	Mola_mola
ENSORLG00000028798	rbm17	100	80.098	ENSMODG00000016648	RBM17	100	79.481	Monodelphis_domestica
ENSORLG00000028798	rbm17	100	89.810	ENSMALG00000010597	rbm17	100	90.995	Monopterus_albus
ENSORLG00000028798	rbm17	100	80.425	MGP_CAROLIEiJ_G0023173	Rbm17	100	80.425	Mus_caroli
ENSORLG00000028798	rbm17	100	80.425	ENSMUSG00000037197	Rbm17	100	80.425	Mus_musculus
ENSORLG00000028798	rbm17	100	80.189	MGP_PahariEiJ_G0019233	Rbm17	100	80.189	Mus_pahari
ENSORLG00000028798	rbm17	100	80.425	MGP_SPRETEiJ_G0024091	Rbm17	100	80.425	Mus_spretus
ENSORLG00000028798	rbm17	86	78.286	ENSMPUG00000016359	RBM17	96	76.724	Mustela_putorius_furo
ENSORLG00000028798	rbm17	100	78.353	ENSMLUG00000002302	-	100	77.176	Myotis_lucifugus
ENSORLG00000028798	rbm17	100	75.980	ENSMLUG00000025709	-	100	74.292	Myotis_lucifugus
ENSORLG00000028798	rbm17	100	56.456	ENSNGAG00000000663	-	100	56.927	Nannospalax_galili
ENSORLG00000028798	rbm17	100	80.189	ENSNGAG00000000741	Rbm17	100	80.189	Nannospalax_galili
ENSORLG00000028798	rbm17	100	89.899	ENSNBRG00000018148	rbm17	100	88.889	Neolamprologus_brichardi
ENSORLG00000028798	rbm17	100	80.344	ENSNLEG00000033350	RBM17	100	87.903	Nomascus_leucogenys
ENSORLG00000028798	rbm17	100	74.693	ENSMEUG00000011347	RBM17	100	73.113	Notamacropus_eugenii
ENSORLG00000028798	rbm17	100	69.951	ENSOPRG00000002993	RBM17	100	69.340	Ochotona_princeps
ENSORLG00000028798	rbm17	97	62.982	ENSODEG00000007286	-	99	61.082	Octodon_degus
ENSORLG00000028798	rbm17	100	80.235	ENSODEG00000004393	RBM17	100	80.235	Octodon_degus
ENSORLG00000028798	rbm17	100	90.499	ENSONIG00000011838	rbm17	100	90.499	Oreochromis_niloticus
ENSORLG00000028798	rbm17	100	79.245	ENSOANG00000015455	RBM17	100	79.481	Ornithorhynchus_anatinus
ENSORLG00000028798	rbm17	100	99.284	ENSORLG00020004593	rbm17	98	99.284	Oryzias_latipes_hni
ENSORLG00000028798	rbm17	100	99.761	ENSORLG00015000033	rbm17	99	99.761	Oryzias_latipes_hsok
ENSORLG00000028798	rbm17	100	98.091	ENSOMEG00000012060	rbm17	100	98.091	Oryzias_melastigma
ENSORLG00000028798	rbm17	100	80.244	ENSOGAG00000015687	RBM17	100	79.009	Otolemur_garnettii
ENSORLG00000028798	rbm17	100	80.590	ENSOARG00000012975	RBM17	100	79.953	Ovis_aries
ENSORLG00000028798	rbm17	100	80.344	ENSPPAG00000032347	RBM17	97	90.000	Pan_paniscus
ENSORLG00000028798	rbm17	100	80.590	ENSPPRG00000010706	RBM17	100	79.953	Panthera_pardus
ENSORLG00000028798	rbm17	100	80.590	ENSPTIG00000007596	RBM17	100	79.953	Panthera_tigris_altaica
ENSORLG00000028798	rbm17	100	80.344	ENSPTRG00000002265	RBM17	97	90.000	Pan_troglodytes
ENSORLG00000028798	rbm17	100	80.344	ENSPANG00000023425	RBM17	97	90.000	Papio_anubis
ENSORLG00000028798	rbm17	100	79.625	ENSPKIG00000025526	rbm17	100	79.391	Paramormyrops_kingsleyae
ENSORLG00000028798	rbm17	100	78.392	ENSPKIG00000005048	-	100	77.907	Paramormyrops_kingsleyae
ENSORLG00000028798	rbm17	100	79.268	ENSPSIG00000012332	RBM17	100	78.689	Pelodiscus_sinensis
ENSORLG00000028798	rbm17	100	87.000	ENSPMGG00000007980	rbm17	100	85.250	Periophthalmus_magnuspinnatus
ENSORLG00000028798	rbm17	100	80.189	ENSPEMG00000014320	Rbm17	100	80.189	Peromyscus_maniculatus_bairdii
ENSORLG00000028798	rbm17	100	79.707	ENSPCIG00000019260	-	100	79.108	Phascolarctos_cinereus
ENSORLG00000028798	rbm17	100	91.449	ENSPFOG00000013271	rbm17	100	91.449	Poecilia_formosa
ENSORLG00000028798	rbm17	100	91.449	ENSPLAG00000004455	rbm17	100	91.449	Poecilia_latipinna
ENSORLG00000028798	rbm17	100	91.449	ENSPMEG00000014864	rbm17	100	91.449	Poecilia_mexicana
ENSORLG00000028798	rbm17	100	91.449	ENSPREG00000015589	rbm17	100	91.449	Poecilia_reticulata
ENSORLG00000028798	rbm17	100	80.344	ENSPPYG00000002067	RBM17	100	79.717	Pongo_abelii
ENSORLG00000028798	rbm17	99	59.506	ENSPPYG00000019881	-	100	59.494	Pongo_abelii
ENSORLG00000028798	rbm17	80	56.707	ENSPPYG00000019042	-	100	56.426	Pongo_abelii
ENSORLG00000028798	rbm17	100	72.973	ENSPCAG00000016879	RBM17	100	72.642	Procavia_capensis
ENSORLG00000028798	rbm17	100	82.116	ENSPCOG00000027881	RBM17	100	80.353	Propithecus_coquereli
ENSORLG00000028798	rbm17	100	71.182	ENSPVAG00000015499	RBM17	100	70.647	Pteropus_vampyrus
ENSORLG00000028798	rbm17	100	84.343	ENSPNYG00000015274	rbm17	100	84.848	Pundamilia_nyererei
ENSORLG00000028798	rbm17	100	81.797	ENSPNAG00000030046	rbm17	100	83.688	Pygocentrus_nattereri
ENSORLG00000028798	rbm17	100	80.189	ENSRNOG00000018767	Rbm17	100	80.189	Rattus_norvegicus
ENSORLG00000028798	rbm17	100	80.344	ENSRBIG00000043727	RBM17	97	90.000	Rhinopithecus_bieti
ENSORLG00000028798	rbm17	100	80.344	ENSRROG00000044142	RBM17	97	90.000	Rhinopithecus_roxellana
ENSORLG00000028798	rbm17	100	80.590	ENSSBOG00000031661	-	93	91.304	Saimiri_boliviensis_boliviensis
ENSORLG00000028798	rbm17	100	71.529	ENSSBOG00000023653	-	100	70.118	Saimiri_boliviensis_boliviensis
ENSORLG00000028798	rbm17	100	80.098	ENSSHAG00000012480	-	100	79.953	Sarcophilus_harrisii
ENSORLG00000028798	rbm17	100	80.328	ENSSFOG00015009892	rbm17	100	81.265	Scleropages_formosus
ENSORLG00000028798	rbm17	100	87.879	ENSSMAG00000012368	rbm17	100	87.626	Scophthalmus_maximus
ENSORLG00000028798	rbm17	100	91.414	ENSSDUG00000015015	rbm17	100	90.909	Seriola_dumerili
ENSORLG00000028798	rbm17	100	91.414	ENSSLDG00000014486	rbm17	100	90.909	Seriola_lalandi_dorsalis
ENSORLG00000028798	rbm17	50	80.909	ENSSARG00000001792	-	79	80.909	Sorex_araneus
ENSORLG00000028798	rbm17	99	80.542	ENSSPUG00000001036	RBM17	99	79.905	Sphenodon_punctatus
ENSORLG00000028798	rbm17	100	93.587	ENSSPAG00000002338	rbm17	100	93.587	Stegastes_partitus
ENSORLG00000028798	rbm17	100	80.590	ENSSSCG00000011134	RBM17	100	79.953	Sus_scrofa
ENSORLG00000028798	rbm17	100	79.529	ENSTGUG00000002013	RBM17	100	79.529	Taeniopygia_guttata
ENSORLG00000028798	rbm17	100	89.786	ENSTRUG00000010698	rbm17	100	89.786	Takifugu_rubripes
ENSORLG00000028798	rbm17	100	89.786	ENSTNIG00000006892	rbm17	100	89.786	Tetraodon_nigroviridis
ENSORLG00000028798	rbm17	100	62.469	ENSTBEG00000014686	RBM17	100	64.198	Tupaia_belangeri
ENSORLG00000028798	rbm17	90	79.508	ENSTTRG00000001344	RBM17	100	78.851	Tursiops_truncatus
ENSORLG00000028798	rbm17	100	79.851	ENSUAMG00000009499	RBM17	100	79.851	Ursus_americanus
ENSORLG00000028798	rbm17	100	80.590	ENSUMAG00000012237	RBM17	100	80.101	Ursus_maritimus
ENSORLG00000028798	rbm17	100	68.160	ENSVPAG00000005497	RBM17	86	85.926	Vicugna_pacos
ENSORLG00000028798	rbm17	100	80.353	ENSVVUG00000006780	RBM17	100	80.353	Vulpes_vulpes
ENSORLG00000028798	rbm17	99	77.284	ENSXETG00000018123	rbm17	100	76.179	Xenopus_tropicalis
ENSORLG00000028798	rbm17	100	91.211	ENSXMAG00000008674	rbm17	100	91.211	Xiphophorus_maculatus