EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSORLG00000029593 (Gene tree)
Gene ID
101154771
Gene Symbol
MSI1
Alias
-
Full Name
RNA-binding protein Musashi homolog 1
Gene Type
protein_coding
Species
Oryzias_latipes
Status
putative
Strand
Minus strand
Length
34163 bases
Position
chr5:17884611-17918773
Accession
101154771
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00000011264RRM_1PF00076.222e-3412
ENSORLP00000011264RRM_1PF00076.222e-3422
ENSORLP00000045002RRM_1PF00076.222.6e-3412
ENSORLP00000045002RRM_1PF00076.222.6e-3422
ENSORLP00000031473RRM_1PF00076.222.7e-3412
ENSORLP00000031473RRM_1PF00076.222.7e-3422
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00000031832MSI1-2023552XM_023955029ENSORLP00000045002349 (aa)XP_023810797UPI0009DA90A3
ENSORLT00000011265MSI1-203972-ENSORLP00000011264323 (aa)-H2LYP5
ENSORLT00000036839MSI1-2013570XM_023955028ENSORLP00000031473355 (aa)XP_023810796UPI000CE22FFB
Gene Model
Click here to download ENSORLG00000029593's gene model file
Pathways
Pathway IDPathway NameSource
ola03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000029593's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSORLG00000029593MSI15447.619ENSORLG00000001833hnrnpd7938.911
ENSORLG00000029593MSI17535.644ENSORLG00000029240-9835.644
ENSORLG00000029593MSI15836.559ENSORLG00000023176-6137.037
ENSORLG00000029593MSI15137.079ENSORLG00000012546rbm24a8638.636
ENSORLG00000029593MSI15333.918ENSORLG00000003593tardbp5534.524
ENSORLG00000029593MSI16532.093ENSORLG00000025332-8430.682
ENSORLG00000029593MSI15836.216ENSORLG00000024157-8632.645
ENSORLG00000029593MSI15344.970ENSORLG00000005327hnrnpaba7936.996
ENSORLG00000029593MSI15542.529ENSORLG00000008001-5642.135
ENSORLG00000029593MSI15037.079ENSORLG00000007916rbm24b8935.789
ENSORLG00000029593MSI15841.848ENSORLG00000017561hnrnpa36638.528
ENSORLG00000029593MSI16532.558ENSORLG00000030284-8431.818
ENSORLG00000029593MSI15737.241ENSORLG00000005188tardbpl5337.241
ENSORLG00000029593MSI15536.066ENSORLG00000026571-9736.066
ENSORLG00000029593MSI110090.883ENSORLG00000019978-10090.883
ENSORLG00000029593MSI19970.234ENSORLG00000009671msi2a9867.246
ENSORLG00000029593MSI15437.572ENSORLG00000027074-7937.572
ENSORLG00000029593MSI15344.379ENSORLG00000026044hnrnpabb8336.957
ENSORLG00000029593MSI16532.093ENSORLG00000025015-8430.682
ENSORLG00000029593MSI15835.106ENSORLG00000023542-6335.106
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00000029593MSI110083.791ENSG00000135097MSI110083.791Homo_sapiens
ENSORLG00000029593MSI110098.281ENSAPOG00000003191MSI110098.281Acanthochromis_polyacanthus
ENSORLG00000029593MSI110091.168ENSAPOG00000023458-10091.168Acanthochromis_polyacanthus
ENSORLG00000029593MSI19392.188ENSAMEG00000013302MSI18392.308Ailuropoda_melanoleuca
ENSORLG00000029593MSI19588.050ENSACIG00000017754-7296.535Amphilophus_citrinellus
ENSORLG00000029593MSI19984.735ENSAOCG00000009031-9885.358Amphiprion_ocellaris
ENSORLG00000029593MSI110098.281ENSAOCG00000003804MSI110098.281Amphiprion_ocellaris
ENSORLG00000029593MSI110091.168ENSAPEG00000006857-8491.168Amphiprion_percula
ENSORLG00000029593MSI110098.281ENSAPEG00000003245MSI110098.281Amphiprion_percula
ENSORLG00000029593MSI110090.085ENSATEG00000023779-10090.085Anabas_testudineus
ENSORLG00000029593MSI110086.835ENSATEG00000017059MSI110086.835Anabas_testudineus
ENSORLG00000029593MSI110083.425ENSACAG00000002762MSI110084.254Anolis_carolinensis
ENSORLG00000029593MSI110083.791ENSANAG00000027151MSI110083.791Aotus_nancymaae
ENSORLG00000029593MSI18282.986ENSANAG00000027901-8882.986Aotus_nancymaae
ENSORLG00000029593MSI110096.296ENSACLG00000011230MSI110096.296Astatotilapia_calliptera
ENSORLG00000029593MSI110091.429ENSACLG00000000117-10092.355Astatotilapia_calliptera
ENSORLG00000029593MSI19488.401ENSAMXG00000038960msi17688.401Astyanax_mexicanus
ENSORLG00000029593MSI110083.791ENSBTAG00000009800MSI110085.924Bos_taurus
ENSORLG00000029593MSI110083.791ENSCJAG00000008578MSI110083.791Callithrix_jacchus
ENSORLG00000029593MSI110083.516ENSCAFG00000010283MSI110083.516Canis_familiaris
ENSORLG00000029593MSI19485.209ENSCAFG00020020585MSI110085.209Canis_lupus_dingo
ENSORLG00000029593MSI110082.385ENSCHIG00000024304MSI110082.385Capra_hircus
ENSORLG00000029593MSI19485.321ENSTSYG00000033949MSI19585.321Carlito_syrichta
ENSORLG00000029593MSI19485.348ENSCAPG00000003919MSI17885.348Cavia_aperea
ENSORLG00000029593MSI19485.965ENSCPOG00000012361MSI110085.965Cavia_porcellus
ENSORLG00000029593MSI110083.791ENSCCAG00000035567MSI110083.791Cebus_capucinus
ENSORLG00000029593MSI110083.791ENSCATG00000030019MSI110083.791Cercocebus_atys
ENSORLG00000029593MSI19882.369ENSCLAG00000011329MSI110085.965Chinchilla_lanigera
ENSORLG00000029593MSI17291.518ENSCSAG00000002265MSI19682.437Chlorocebus_sabaeus
ENSORLG00000029593MSI110086.402ENSCPBG00000011349MSI110086.402Chrysemys_picta_bellii
ENSORLG00000029593MSI19485.366ENSCANG00000040651MSI110085.366Colobus_angolensis_palliatus
ENSORLG00000029593MSI110083.791ENSCGRG00001018883Msi110083.791Cricetulus_griseus_chok1gshd
ENSORLG00000029593MSI19485.410ENSCGRG00000002191Msi17285.410Cricetulus_griseus_crigri
ENSORLG00000029593MSI19981.789ENSCSEG00000011032MSI110083.129Cynoglossus_semilaevis
ENSORLG00000029593MSI110096.571ENSCSEG00000005834-10096.571Cynoglossus_semilaevis
ENSORLG00000029593MSI110090.000ENSCSEG00000008352-10090.000Cynoglossus_semilaevis
ENSORLG00000029593MSI16280.556ENSCVAG00000017463-8980.556Cyprinodon_variegatus
ENSORLG00000029593MSI110091.714ENSCVAG00000009100MSI110091.714Cyprinodon_variegatus
ENSORLG00000029593MSI15173.134ENSCVAG00000017430zgc:1107969473.134Cyprinodon_variegatus
ENSORLG00000029593MSI17990.698ENSDARG00000102015CABZ01037298.18990.698Danio_rerio
ENSORLG00000029593MSI19982.667ENSDARG00000010710msi110092.056Danio_rerio
ENSORLG00000029593MSI19482.278ENSDNOG00000005713MSI19182.278Dasypus_novemcinctus
ENSORLG00000029593MSI19484.731ENSDORG00000005610Msi19484.731Dipodomys_ordii
ENSORLG00000029593MSI19482.927ENSETEG00000004756MSI110082.622Echinops_telfairi
ENSORLG00000029593MSI110083.791ENSEASG00005004736MSI110083.791Equus_asinus_asinus
ENSORLG00000029593MSI110083.791ENSECAG00000017526MSI110083.791Equus_caballus
ENSORLG00000029593MSI19984.375ENSELUG00000023280-10086.810Esox_lucius
ENSORLG00000029593MSI19485.100ENSELUG00000023219MSI19285.100Esox_lucius
ENSORLG00000029593MSI110083.791ENSFCAG00000011007MSI110083.791Felis_catus
ENSORLG00000029593MSI19488.333ENSFALG00000007574MSI110088.333Ficedula_albicollis
ENSORLG00000029593MSI19485.061ENSFDAG00000019586MSI110085.061Fukomys_damarensis
ENSORLG00000029593MSI110098.286ENSFHEG00000003560-10098.286Fundulus_heteroclitus
ENSORLG00000029593MSI110091.453ENSFHEG00000022446MSI110091.453Fundulus_heteroclitus
ENSORLG00000029593MSI110090.258ENSGMOG00000001006MSI19989.971Gadus_morhua
ENSORLG00000029593MSI110085.876ENSGMOG00000017838-10085.876Gadus_morhua
ENSORLG00000029593MSI19488.931ENSGALG00000007227MSI19875.064Gallus_gallus
ENSORLG00000029593MSI110069.405ENSGAFG00000005860-10069.405Gambusia_affinis
ENSORLG00000029593MSI19498.165ENSGAFG00000021522MSI19498.165Gambusia_affinis
ENSORLG00000029593MSI110089.459ENSGACG00000012679MSI110089.459Gasterosteus_aculeatus
ENSORLG00000029593MSI110087.603ENSGACG00000008674-10087.603Gasterosteus_aculeatus
ENSORLG00000029593MSI110086.119ENSGAGG00000016037MSI110086.119Gopherus_agassizii
ENSORLG00000029593MSI19485.032ENSGGOG00000010328MSI110085.032Gorilla_gorilla
ENSORLG00000029593MSI110091.429ENSHBUG00000011841-10091.429Haplochromis_burtoni
ENSORLG00000029593MSI110096.296ENSHBUG00000021921MSI110096.296Haplochromis_burtoni
ENSORLG00000029593MSI110083.516ENSHGLG00000012782MSI110083.516Heterocephalus_glaber_female
ENSORLG00000029593MSI19485.061ENSHGLG00100016848MSI110085.061Heterocephalus_glaber_male
ENSORLG00000029593MSI110086.441ENSHCOG00000012067-10086.441Hippocampus_comes
ENSORLG00000029593MSI19989.776ENSHCOG00000012019MSI19595.847Hippocampus_comes
ENSORLG00000029593MSI110087.179ENSIPUG00000001976msi110087.179Ictalurus_punctatus
ENSORLG00000029593MSI19485.209ENSSTOG00000009799MSI110085.209Ictidomys_tridecemlineatus
ENSORLG00000029593MSI110083.791ENSJJAG00000010463Msi110083.791Jaculus_jaculus
ENSORLG00000029593MSI19973.148ENSJJAG00000010643-10071.389Jaculus_jaculus
ENSORLG00000029593MSI19992.652ENSKMAG00000019877-10093.558Kryptolebias_marmoratus
ENSORLG00000029593MSI110091.691ENSKMAG00000011251MSI110091.691Kryptolebias_marmoratus
ENSORLG00000029593MSI110097.143ENSLBEG00000001375-10097.143Labrus_bergylta
ENSORLG00000029593MSI110091.453ENSLBEG00000008789MSI110091.453Labrus_bergylta
ENSORLG00000029593MSI19482.749ENSLACG00000018287MSI110082.749Latimeria_chalumnae
ENSORLG00000029593MSI15275.893ENSLOCG00000008618zgc:1107967175.893Lepisosteus_oculatus
ENSORLG00000029593MSI19375.896ENSLAFG00000009412MSI110076.435Loxodonta_africana
ENSORLG00000029593MSI19485.965ENSMFAG00000001798MSI110085.965Macaca_fascicularis
ENSORLG00000029593MSI19485.965ENSMMUG00000031527MSI19982.778Macaca_mulatta
ENSORLG00000029593MSI110083.791ENSMNEG00000040034MSI110083.791Macaca_nemestrina
ENSORLG00000029593MSI19485.366ENSMLEG00000003921MSI110085.366Mandrillus_leucophaeus
ENSORLG00000029593MSI110091.404ENSMAMG00000002279MSI110091.404Mastacembelus_armatus
ENSORLG00000029593MSI110097.994ENSMAMG00000018426-10097.994Mastacembelus_armatus
ENSORLG00000029593MSI110091.429ENSMZEG00005000340-10091.429Maylandia_zebra
ENSORLG00000029593MSI110096.296ENSMZEG00005026892MSI110096.296Maylandia_zebra
ENSORLG00000029593MSI17191.716ENSMGAG00000016518-10091.716Meleagris_gallopavo
ENSORLG00000029593MSI17291.518ENSMAUG00000016820Msi110088.477Mesocricetus_auratus
ENSORLG00000029593MSI110083.791ENSMICG00000033181MSI110083.791Microcebus_murinus
ENSORLG00000029593MSI110083.516ENSMOCG00000002286Msi110083.516Microtus_ochrogaster
ENSORLG00000029593MSI19988.673ENSMMOG00000012265-9791.139Mola_mola
ENSORLG00000029593MSI19983.801ENSMMOG00000010492MSI19683.801Mola_mola
ENSORLG00000029593MSI19357.831ENSMODG00000003189-10059.036Monodelphis_domestica
ENSORLG00000029593MSI19496.933ENSMALG00000001426-10096.933Monopterus_albus
ENSORLG00000029593MSI110091.429ENSMALG00000017889MSI110091.429Monopterus_albus
ENSORLG00000029593MSI110083.242MGP_CAROLIEiJ_G0027626Msi110083.242Mus_caroli
ENSORLG00000029593MSI110083.242ENSMUSG00000054256Msi19987.963Mus_musculus
ENSORLG00000029593MSI110086.080MGP_PahariEiJ_G0024206Msi110086.080Mus_pahari
ENSORLG00000029593MSI110083.242MGP_SPRETEiJ_G0028624Msi110083.242Mus_spretus
ENSORLG00000029593MSI19485.209ENSMPUG00000003168MSI110085.209Mustela_putorius_furo
ENSORLG00000029593MSI19476.488ENSMLUG00000010313MSI110076.488Myotis_lucifugus
ENSORLG00000029593MSI19485.410ENSNGAG00000014508Msi19880.055Nannospalax_galili
ENSORLG00000029593MSI110091.429ENSNBRG00000000841-10091.429Neolamprologus_brichardi
ENSORLG00000029593MSI18787.705ENSNBRG00000018012MSI19987.705Neolamprologus_brichardi
ENSORLG00000029593MSI19075.610ENSNLEG00000015636MSI110075.610Nomascus_leucogenys
ENSORLG00000029593MSI19466.463ENSMEUG00000015759MSI110066.463Notamacropus_eugenii
ENSORLG00000029593MSI19177.778ENSOPRG00000016879MSI110077.778Ochotona_princeps
ENSORLG00000029593MSI19485.366ENSODEG00000006328MSI110085.366Octodon_degus
ENSORLG00000029593MSI110093.132ENSONIG00000019452-10093.132Oreochromis_niloticus
ENSORLG00000029593MSI110091.429ENSONIG00000011182MSI110091.429Oreochromis_niloticus
ENSORLG00000029593MSI19485.531ENSOCUG00000027716MSI110085.531Oryctolagus_cuniculus
ENSORLG00000029593MSI1100100.000ENSORLG00020008266MSI1100100.000Oryzias_latipes_hni
ENSORLG00000029593MSI110090.883ENSORLG00020001208-7190.883Oryzias_latipes_hni
ENSORLG00000029593MSI110090.883ENSORLG00015013672-7686.040Oryzias_latipes_hsok
ENSORLG00000029593MSI1100100.000ENSORLG00015003916MSI1100100.000Oryzias_latipes_hsok
ENSORLG00000029593MSI110091.168ENSOMEG00000017536MSI110091.168Oryzias_melastigma
ENSORLG00000029593MSI110099.140ENSOMEG00000002272-10099.140Oryzias_melastigma
ENSORLG00000029593MSI19982.143ENSOGAG00000003847MSI19885.217Otolemur_garnettii
ENSORLG00000029593MSI19483.030ENSOARG00000012097MSI110083.030Ovis_aries
ENSORLG00000029593MSI19485.366ENSPPAG00000043073MSI110085.366Pan_paniscus
ENSORLG00000029593MSI110083.791ENSPPRG00000000370MSI110083.791Panthera_pardus
ENSORLG00000029593MSI19485.209ENSPTIG00000008913MSI110085.209Panthera_tigris_altaica
ENSORLG00000029593MSI110083.791ENSPTRG00000005531MSI110083.791Pan_troglodytes
ENSORLG00000029593MSI110083.516ENSPANG00000006335MSI110083.516Papio_anubis
ENSORLG00000029593MSI110090.286ENSPKIG00000023575-10090.286Paramormyrops_kingsleyae
ENSORLG00000029593MSI110093.143ENSPKIG00000016497MSI110093.143Paramormyrops_kingsleyae
ENSORLG00000029593MSI15283.761ENSPSIG00000016295-9583.761Pelodiscus_sinensis
ENSORLG00000029593MSI19981.846ENSPSIG00000011608-9386.280Pelodiscus_sinensis
ENSORLG00000029593MSI17981.140ENSPSIG00000009621-10081.579Pelodiscus_sinensis
ENSORLG00000029593MSI19685.382ENSPMGG00000000514MSI19786.349Periophthalmus_magnuspinnatus
ENSORLG00000029593MSI19974.702ENSPMGG00000007743-9871.182Periophthalmus_magnuspinnatus
ENSORLG00000029593MSI19483.976ENSPEMG00000010491Msi19583.976Peromyscus_maniculatus_bairdii
ENSORLG00000029593MSI110091.168ENSPFOG00000013113MSI110091.168Poecilia_formosa
ENSORLG00000029593MSI110098.286ENSPFOG00000008319-8698.286Poecilia_formosa
ENSORLG00000029593MSI110091.168ENSPLAG00000014025-10091.168Poecilia_latipinna
ENSORLG00000029593MSI110098.286ENSPLAG00000012431-9798.286Poecilia_latipinna
ENSORLG00000029593MSI110098.281ENSPMEG00000007025-9691.667Poecilia_mexicana
ENSORLG00000029593MSI110091.168ENSPMEG00000012796MSI110091.168Poecilia_mexicana
ENSORLG00000029593MSI17879.208ENSPREG00000014574-10079.902Poecilia_reticulata
ENSORLG00000029593MSI19992.027ENSPREG00000021416-9887.755Poecilia_reticulata
ENSORLG00000029593MSI110082.967ENSPPYG00000005027MSI110082.967Pongo_abelii
ENSORLG00000029593MSI17788.325ENSPCAG00000002300MSI17288.325Procavia_capensis
ENSORLG00000029593MSI110083.791ENSPCOG00000017341MSI110083.791Propithecus_coquereli
ENSORLG00000029593MSI19469.512ENSPVAG00000002225MSI110069.512Pteropus_vampyrus
ENSORLG00000029593MSI110091.429ENSPNYG00000002529-10091.429Pundamilia_nyererei
ENSORLG00000029593MSI110096.296ENSPNYG00000004379MSI110096.296Pundamilia_nyererei
ENSORLG00000029593MSI110087.749ENSPNAG00000019337msi110087.749Pygocentrus_nattereri
ENSORLG00000029593MSI19484.887ENSRNOG00000001156Msi110084.887Rattus_norvegicus
ENSORLG00000029593MSI19485.410ENSRBIG00000036889MSI110085.209Rhinopithecus_bieti
ENSORLG00000029593MSI19485.152ENSRROG00000041076MSI110079.452Rhinopithecus_roxellana
ENSORLG00000029593MSI19486.006ENSSBOG00000030259MSI19986.006Saimiri_boliviensis_boliviensis
ENSORLG00000029593MSI19474.510ENSSHAG00000006834MSI110074.510Sarcophilus_harrisii
ENSORLG00000029593MSI19494.817ENSSFOG00015014964-9594.833Scleropages_formosus
ENSORLG00000029593MSI19492.145ENSSFOG00015005350MSI19692.169Scleropages_formosus
ENSORLG00000029593MSI19497.318ENSSMAG00000009156-7297.030Scophthalmus_maximus
ENSORLG00000029593MSI19985.050ENSSMAG00000018824MSI19786.076Scophthalmus_maximus
ENSORLG00000029593MSI110091.168ENSSDUG00000001027MSI110091.168Seriola_dumerili
ENSORLG00000029593MSI110097.429ENSSDUG00000022697-10097.429Seriola_dumerili
ENSORLG00000029593MSI19985.849ENSSLDG00000018706-9986.478Seriola_lalandi_dorsalis
ENSORLG00000029593MSI110091.168ENSSLDG00000016832MSI110091.168Seriola_lalandi_dorsalis
ENSORLG00000029593MSI110086.119ENSSPUG00000015741MSI110086.119Sphenodon_punctatus
ENSORLG00000029593MSI19497.256ENSSPAG00000013098-10097.256Stegastes_partitus
ENSORLG00000029593MSI17879.592ENSSPAG00000014085-10079.592Stegastes_partitus
ENSORLG00000029593MSI15093.162ENSSPAG00000015573zgc:1107968279.012Stegastes_partitus
ENSORLG00000029593MSI110083.516ENSSSCG00000029365MSI110084.887Sus_scrofa
ENSORLG00000029593MSI19486.176ENSTGUG00000009534MSI110086.176Taeniopygia_guttata
ENSORLG00000029593MSI18089.862ENSTRUG00000016249MSI110081.028Takifugu_rubripes
ENSORLG00000029593MSI15079.798ENSTRUG00000021586-9979.798Takifugu_rubripes
ENSORLG00000029593MSI19989.037ENSTRUG00000015636-7989.037Takifugu_rubripes
ENSORLG00000029593MSI110086.648ENSTNIG00000011469MSI110086.648Tetraodon_nigroviridis
ENSORLG00000029593MSI19964.465ENSTNIG00000019814-9766.176Tetraodon_nigroviridis
ENSORLG00000029593MSI19973.455ENSTBEG00000007182MSI110075.177Tupaia_belangeri
ENSORLG00000029593MSI17787.970ENSTTRG00000005663MSI17887.970Tursiops_truncatus
ENSORLG00000029593MSI17291.192ENSUAMG00000015514MSI19486.512Ursus_americanus
ENSORLG00000029593MSI19978.188ENSUMAG00000006176MSI18881.759Ursus_maritimus
ENSORLG00000029593MSI19485.410ENSVVUG00000020993MSI110084.685Vulpes_vulpes
ENSORLG00000029593MSI110083.954ENSXETG00000012216msi110083.954Xenopus_tropicalis
ENSORLG00000029593MSI110078.947ENSXCOG00000017605MSI19279.257Xiphophorus_couchianus
ENSORLG00000029593MSI110098.567ENSXMAG00000018237-10098.567Xiphophorus_maculatus
ENSORLG00000029593MSI110091.714ENSXMAG00000027103MSI110079.552Xiphophorus_maculatus

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