EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000029719 (Gene tree)
Gene ID: 105354521
Gene Symbol: trub1
Alias: -
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 6397 bases
Position: chr19:23063362-23069758
Accession: 105354521
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000036771	TruB_N	PF01509.18	4.2e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000030241	-	2634	XM_023949438	ENSORLP00000036771	279 (aa)	XP_023805206	UPI0009DAE0BC

Gene Model

Click here to download ENSORLG00000029719's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000029719's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000029719	trub1	92	65.152	ENSG00000165832	TRUB1	76	65.152	Homo_sapiens
ENSORLG00000029719	trub1	93	86.100	ENSAPOG00000020565	trub1	99	82.482	Acanthochromis_polyacanthus
ENSORLG00000029719	trub1	86	69.136	ENSAMEG00000014931	TRUB1	69	69.136	Ailuropoda_melanoleuca
ENSORLG00000029719	trub1	96	76.580	ENSACIG00000003060	trub1	90	76.580	Amphilophus_citrinellus
ENSORLG00000029719	trub1	93	85.714	ENSAOCG00000017188	trub1	99	82.117	Amphiprion_ocellaris
ENSORLG00000029719	trub1	93	85.328	ENSAPEG00000015209	trub1	99	81.752	Amphiprion_percula
ENSORLG00000029719	trub1	88	86.531	ENSATEG00000023291	trub1	87	86.831	Anabas_testudineus
ENSORLG00000029719	trub1	86	68.880	ENSAPLG00000006808	TRUB1	86	68.880	Anas_platyrhynchos
ENSORLG00000029719	trub1	86	65.975	ENSACAG00000009282	TRUB1	87	65.975	Anolis_carolinensis
ENSORLG00000029719	trub1	86	69.295	ENSANAG00000022870	TRUB1	69	69.295	Aotus_nancymaae
ENSORLG00000029719	trub1	98	81.091	ENSACLG00000000823	trub1	99	81.091	Astatotilapia_calliptera
ENSORLG00000029719	trub1	96	72.761	ENSAMXG00000015845	trub1	87	73.563	Astyanax_mexicanus
ENSORLG00000029719	trub1	87	69.835	ENSBTAG00000012955	TRUB1	69	69.835	Bos_taurus
ENSORLG00000029719	trub1	86	69.295	ENSCJAG00000047815	TRUB1	69	69.295	Callithrix_jacchus
ENSORLG00000029719	trub1	86	69.295	ENSCAFG00000011688	TRUB1	69	69.295	Canis_familiaris
ENSORLG00000029719	trub1	86	69.295	ENSCAFG00020013237	TRUB1	69	69.295	Canis_lupus_dingo
ENSORLG00000029719	trub1	87	69.421	ENSCHIG00000020884	TRUB1	72	69.710	Capra_hircus
ENSORLG00000029719	trub1	86	68.465	ENSTSYG00000000446	TRUB1	69	68.465	Carlito_syrichta
ENSORLG00000029719	trub1	75	61.538	ENSCAPG00000017088	TRUB1	80	61.538	Cavia_aperea
ENSORLG00000029719	trub1	65	67.582	ENSCPOG00000040236	-	75	67.582	Cavia_porcellus
ENSORLG00000029719	trub1	66	66.486	ENSCPOG00000030129	-	72	66.486	Cavia_porcellus
ENSORLG00000029719	trub1	86	69.295	ENSCCAG00000028842	TRUB1	69	69.295	Cebus_capucinus
ENSORLG00000029719	trub1	86	69.295	ENSCATG00000033431	TRUB1	69	69.295	Cercocebus_atys
ENSORLG00000029719	trub1	65	66.484	ENSCLAG00000008664	TRUB1	75	66.484	Chinchilla_lanigera
ENSORLG00000029719	trub1	86	69.295	ENSCSAG00000004891	TRUB1	69	69.295	Chlorocebus_sabaeus
ENSORLG00000029719	trub1	86	62.241	ENSCHOG00000011931	TRUB1	69	62.241	Choloepus_hoffmanni
ENSORLG00000029719	trub1	86	72.199	ENSCPBG00000003051	TRUB1	83	72.199	Chrysemys_picta_bellii
ENSORLG00000029719	trub1	86	69.295	ENSCANG00000029445	TRUB1	69	69.295	Colobus_angolensis_palliatus
ENSORLG00000029719	trub1	75	68.421	ENSCGRG00001016772	-	70	68.246	Cricetulus_griseus_chok1gshd
ENSORLG00000029719	trub1	84	60.426	ENSCGRG00001010322	-	69	57.198	Cricetulus_griseus_chok1gshd
ENSORLG00000029719	trub1	84	68.085	ENSCGRG00000010806	Trub1	74	67.769	Cricetulus_griseus_crigri
ENSORLG00000029719	trub1	92	75.097	ENSCSEG00000011261	trub1	84	74.903	Cynoglossus_semilaevis
ENSORLG00000029719	trub1	97	79.044	ENSCVAG00000008791	trub1	81	80.000	Cyprinodon_variegatus
ENSORLG00000029719	trub1	99	67.944	ENSDARG00000053805	trub1	93	69.485	Danio_rerio
ENSORLG00000029719	trub1	86	67.220	ENSDNOG00000001069	TRUB1	69	67.220	Dasypus_novemcinctus
ENSORLG00000029719	trub1	84	68.511	ENSDORG00000010431	Trub1	70	68.465	Dipodomys_ordii
ENSORLG00000029719	trub1	69	66.912	ENSETEG00000009183	TRUB1	56	66.912	Echinops_telfairi
ENSORLG00000029719	trub1	86	68.880	ENSEASG00005014739	TRUB1	69	68.880	Equus_asinus_asinus
ENSORLG00000029719	trub1	86	68.880	ENSECAG00000007177	TRUB1	69	68.880	Equus_caballus
ENSORLG00000029719	trub1	86	60.996	ENSEEUG00000013993	TRUB1	67	60.996	Erinaceus_europaeus
ENSORLG00000029719	trub1	90	77.689	ENSELUG00000000502	trub1	87	77.600	Esox_lucius
ENSORLG00000029719	trub1	91	67.194	ENSFCAG00000031927	TRUB1	69	69.710	Felis_catus
ENSORLG00000029719	trub1	76	68.396	ENSFALG00000002232	TRUB1	81	68.396	Ficedula_albicollis
ENSORLG00000029719	trub1	65	68.132	ENSFDAG00000008140	TRUB1	75	68.132	Fukomys_damarensis
ENSORLG00000029719	trub1	98	79.121	ENSFHEG00000004016	trub1	93	79.121	Fundulus_heteroclitus
ENSORLG00000029719	trub1	86	67.635	ENSGALG00000009091	TRUB1	85	67.635	Gallus_gallus
ENSORLG00000029719	trub1	92	82.171	ENSGAFG00000009193	trub1	90	81.395	Gambusia_affinis
ENSORLG00000029719	trub1	70	84.536	ENSGACG00000015387	trub1	95	84.536	Gasterosteus_aculeatus
ENSORLG00000029719	trub1	87	72.314	ENSGAGG00000009758	TRUB1	69	72.614	Gopherus_agassizii
ENSORLG00000029719	trub1	92	65.152	ENSGGOG00000004583	TRUB1	76	65.152	Gorilla_gorilla
ENSORLG00000029719	trub1	98	81.455	ENSHBUG00000016787	trub1	99	81.455	Haplochromis_burtoni
ENSORLG00000029719	trub1	91	62.172	ENSHGLG00000015314	TRUB1	76	62.406	Heterocephalus_glaber_female
ENSORLG00000029719	trub1	65	67.582	ENSHGLG00100009183	TRUB1	77	67.582	Heterocephalus_glaber_male
ENSORLG00000029719	trub1	100	76.344	ENSHCOG00000017877	trub1	94	78.030	Hippocampus_comes
ENSORLG00000029719	trub1	94	74.525	ENSIPUG00000017559	trub1	92	74.427	Ictalurus_punctatus
ENSORLG00000029719	trub1	91	66.535	ENSSTOG00000003641	TRUB1	72	69.038	Ictidomys_tridecemlineatus
ENSORLG00000029719	trub1	86	67.635	ENSJJAG00000011800	Trub1	71	67.635	Jaculus_jaculus
ENSORLG00000029719	trub1	99	80.797	ENSKMAG00000006232	trub1	99	80.797	Kryptolebias_marmoratus
ENSORLG00000029719	trub1	99	78.648	ENSLBEG00000026722	trub1	98	78.648	Labrus_bergylta
ENSORLG00000029719	trub1	100	65.979	ENSLACG00000014885	TRUB1	92	68.248	Latimeria_chalumnae
ENSORLG00000029719	trub1	98	70.330	ENSLOCG00000012979	trub1	87	73.438	Lepisosteus_oculatus
ENSORLG00000029719	trub1	92	65.759	ENSLAFG00000015452	TRUB1	79	62.816	Loxodonta_africana
ENSORLG00000029719	trub1	86	69.295	ENSMFAG00000031767	TRUB1	69	69.295	Macaca_fascicularis
ENSORLG00000029719	trub1	86	69.295	ENSMMUG00000001902	TRUB1	69	69.295	Macaca_mulatta
ENSORLG00000029719	trub1	86	63.485	ENSMNEG00000044646	TRUB1	68	63.900	Macaca_nemestrina
ENSORLG00000029719	trub1	86	69.295	ENSMLEG00000042655	TRUB1	69	69.295	Mandrillus_leucophaeus
ENSORLG00000029719	trub1	98	80.727	ENSMZEG00005024095	trub1	99	80.727	Maylandia_zebra
ENSORLG00000029719	trub1	86	68.050	ENSMGAG00000011135	TRUB1	83	68.050	Meleagris_gallopavo
ENSORLG00000029719	trub1	84	65.957	ENSMAUG00000011101	Trub1	71	65.702	Mesocricetus_auratus
ENSORLG00000029719	trub1	86	68.880	ENSMICG00000016324	TRUB1	69	68.880	Microcebus_murinus
ENSORLG00000029719	trub1	86	67.782	ENSMOCG00000017759	Trub1	74	67.480	Microtus_ochrogaster
ENSORLG00000029719	trub1	87	69.835	ENSMODG00000009676	TRUB1	67	69.835	Monodelphis_domestica
ENSORLG00000029719	trub1	85	68.487	MGP_CAROLIEiJ_G0023100	Trub1	75	68.280	Mus_caroli
ENSORLG00000029719	trub1	85	67.647	ENSMUSG00000025086	Trub1	75	67.204	Mus_musculus
ENSORLG00000029719	trub1	86	67.635	MGP_PahariEiJ_G0014588	Trub1	71	67.635	Mus_pahari
ENSORLG00000029719	trub1	85	67.647	MGP_SPRETEiJ_G0024021	Trub1	75	67.204	Mus_spretus
ENSORLG00000029719	trub1	86	69.710	ENSMPUG00000003556	TRUB1	69	69.710	Mustela_putorius_furo
ENSORLG00000029719	trub1	86	68.465	ENSMLUG00000017686	TRUB1	71	68.465	Myotis_lucifugus
ENSORLG00000029719	trub1	86	68.880	ENSNGAG00000018682	Trub1	69	68.880	Nannospalax_galili
ENSORLG00000029719	trub1	91	84.314	ENSNBRG00000023393	trub1	90	84.524	Neolamprologus_brichardi
ENSORLG00000029719	trub1	92	65.152	ENSNLEG00000016345	TRUB1	76	65.152	Nomascus_leucogenys
ENSORLG00000029719	trub1	72	71.144	ENSMEUG00000006603	TRUB1	75	70.792	Notamacropus_eugenii
ENSORLG00000029719	trub1	86	66.805	ENSOPRG00000009371	TRUB1	70	66.529	Ochotona_princeps
ENSORLG00000029719	trub1	89	65.737	ENSODEG00000010854	TRUB1	69	66.805	Octodon_degus
ENSORLG00000029719	trub1	96	81.041	ENSONIG00000007249	trub1	98	81.041	Oreochromis_niloticus
ENSORLG00000029719	trub1	86	69.295	ENSOANG00000001556	TRUB1	80	69.295	Ornithorhynchus_anatinus
ENSORLG00000029719	trub1	91	66.535	ENSOCUG00000009456	TRUB1	70	68.465	Oryctolagus_cuniculus
ENSORLG00000029719	trub1	100	99.642	ENSORLG00020016767	trub1	99	99.642	Oryzias_latipes_hni
ENSORLG00000029719	trub1	100	98.566	ENSORLG00015014728	trub1	100	98.566	Oryzias_latipes_hsok
ENSORLG00000029719	trub1	100	91.459	ENSOMEG00000014556	trub1	99	91.459	Oryzias_melastigma
ENSORLG00000029719	trub1	86	69.295	ENSOGAG00000015895	TRUB1	69	69.295	Otolemur_garnettii
ENSORLG00000029719	trub1	86	68.145	ENSOARG00000015591	TRUB1	70	68.145	Ovis_aries
ENSORLG00000029719	trub1	92	65.152	ENSPPAG00000043645	TRUB1	76	65.152	Pan_paniscus
ENSORLG00000029719	trub1	91	66.798	ENSPPRG00000007096	TRUB1	69	69.295	Panthera_pardus
ENSORLG00000029719	trub1	91	66.798	ENSPTIG00000006378	TRUB1	69	69.295	Panthera_tigris_altaica
ENSORLG00000029719	trub1	92	65.152	ENSPTRG00000002964	TRUB1	76	65.152	Pan_troglodytes
ENSORLG00000029719	trub1	86	69.295	ENSPANG00000020712	TRUB1	69	69.295	Papio_anubis
ENSORLG00000029719	trub1	61	76.023	ENSPKIG00000003852	trub1	74	76.023	Paramormyrops_kingsleyae
ENSORLG00000029719	trub1	88	71.138	ENSPSIG00000012877	TRUB1	83	71.901	Pelodiscus_sinensis
ENSORLG00000029719	trub1	100	73.477	ENSPMGG00000000075	trub1	98	73.118	Periophthalmus_magnuspinnatus
ENSORLG00000029719	trub1	92	65.759	ENSPEMG00000011156	Trub1	71	68.595	Peromyscus_maniculatus_bairdii
ENSORLG00000029719	trub1	86	70.124	ENSPCIG00000009729	TRUB1	65	70.124	Phascolarctos_cinereus
ENSORLG00000029719	trub1	96	80.524	ENSPFOG00000009950	trub1	94	81.783	Poecilia_formosa
ENSORLG00000029719	trub1	98	80.220	ENSPLAG00000013855	trub1	95	80.220	Poecilia_latipinna
ENSORLG00000029719	trub1	98	80.586	ENSPMEG00000009064	trub1	98	80.586	Poecilia_mexicana
ENSORLG00000029719	trub1	98	80.220	ENSPREG00000003343	trub1	98	80.220	Poecilia_reticulata
ENSORLG00000029719	trub1	92	64.773	ENSPPYG00000002676	TRUB1	76	64.773	Pongo_abelii
ENSORLG00000029719	trub1	92	60.853	ENSPCAG00000008427	TRUB1	69	62.810	Procavia_capensis
ENSORLG00000029719	trub1	86	63.071	ENSPCOG00000024360	TRUB1	67	62.241	Propithecus_coquereli
ENSORLG00000029719	trub1	72	70.149	ENSPVAG00000007575	TRUB1	76	70.149	Pteropus_vampyrus
ENSORLG00000029719	trub1	98	81.455	ENSPNYG00000018614	trub1	99	81.455	Pundamilia_nyererei
ENSORLG00000029719	trub1	97	63.704	ENSPNAG00000006881	trub1	85	64.368	Pygocentrus_nattereri
ENSORLG00000029719	trub1	87	66.529	ENSRNOG00000017321	Trub1	71	66.255	Rattus_norvegicus
ENSORLG00000029719	trub1	86	60.494	ENSRBIG00000033423	TRUB1	66	60.494	Rhinopithecus_bieti
ENSORLG00000029719	trub1	86	69.295	ENSRROG00000033902	TRUB1	69	69.295	Rhinopithecus_roxellana
ENSORLG00000029719	trub1	86	69.295	ENSSBOG00000024237	TRUB1	69	69.295	Saimiri_boliviensis_boliviensis
ENSORLG00000029719	trub1	75	69.811	ENSSHAG00000009346	TRUB1	71	69.811	Sarcophilus_harrisii
ENSORLG00000029719	trub1	99	72.043	ENSSFOG00015022124	trub1	90	74.621	Scleropages_formosus
ENSORLG00000029719	trub1	97	81.181	ENSSMAG00000001020	trub1	96	81.181	Scophthalmus_maximus
ENSORLG00000029719	trub1	97	81.550	ENSSDUG00000016414	trub1	97	81.550	Seriola_dumerili
ENSORLG00000029719	trub1	97	81.550	ENSSLDG00000015486	trub1	99	81.091	Seriola_lalandi_dorsalis
ENSORLG00000029719	trub1	94	66.920	ENSSPUG00000001642	TRUB1	84	69.672	Sphenodon_punctatus
ENSORLG00000029719	trub1	93	84.556	ENSSPAG00000001217	trub1	93	84.556	Stegastes_partitus
ENSORLG00000029719	trub1	86	69.295	ENSSSCG00000010653	TRUB1	70	69.295	Sus_scrofa
ENSORLG00000029719	trub1	86	68.880	ENSTGUG00000010971	TRUB1	86	68.880	Taeniopygia_guttata
ENSORLG00000029719	trub1	75	57.416	ENSTBEG00000002880	TRUB1	82	57.416	Tupaia_belangeri
ENSORLG00000029719	trub1	72	69.652	ENSTTRG00000005767	TRUB1	77	69.652	Tursiops_truncatus
ENSORLG00000029719	trub1	86	69.710	ENSUAMG00000024876	TRUB1	69	69.710	Ursus_americanus
ENSORLG00000029719	trub1	86	69.710	ENSUMAG00000002411	TRUB1	72	69.710	Ursus_maritimus
ENSORLG00000029719	trub1	86	69.295	ENSVPAG00000005507	TRUB1	69	69.295	Vicugna_pacos
ENSORLG00000029719	trub1	87	69.008	ENSVVUG00000010085	TRUB1	58	69.008	Vulpes_vulpes
ENSORLG00000029719	trub1	88	68.571	ENSXETG00000023828	trub1	88	68.724	Xenopus_tropicalis
ENSORLG00000029719	trub1	87	84.016	ENSXCOG00000017847	trub1	86	83.884	Xiphophorus_couchianus
ENSORLG00000029719	trub1	98	80.220	ENSXMAG00000014701	trub1	98	80.220	Xiphophorus_maculatus