EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000030284 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 4779 bases
Position: chr16:6952696-6957474
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000032929	RRM_1	PF00076.22	7.1e-32	1	2
ENSORLP00000032929	RRM_1	PF00076.22	7.1e-32	2	2
ENSORLP00000029544	RRM_1	PF00076.22	5.9e-30	1	2
ENSORLP00000029544	RRM_1	PF00076.22	5.9e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000027564	-	1017	-	ENSORLP00000029544	338 (aa)	-	-
ENSORLT00000032688	-	903	-	ENSORLP00000032929	300 (aa)	-	-

Gene Model

Click here to download ENSORLG00000030284's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000030284's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000030284	-	100	99.000	ENSORLG00000025332	-	100	99.000
ENSORLG00000030284	-	84	31.818	ENSORLG00000029593	MSI1	65	32.558
ENSORLG00000030284	-	59	38.889	ENSORLG00000026044	hnrnpabb	83	35.652
ENSORLG00000030284	-	66	30.939	ENSORLG00000017479	pabpc4	57	30.939
ENSORLG00000030284	-	67	48.485	ENSORLG00000017561	hnrnpa3	56	49.474
ENSORLG00000030284	-	81	31.818	ENSORLG00000019978	-	61	31.818
ENSORLG00000030284	-	58	35.644	ENSORLG00000005327	hnrnpaba	65	35.644
ENSORLG00000030284	-	100	99.000	ENSORLG00000025015	-	100	99.000
ENSORLG00000030284	-	78	92.623	ENSORLG00000029240	-	99	92.623
ENSORLG00000030284	-	70	70.229	ENSORLG00000023542	-	67	69.697
ENSORLG00000030284	-	63	67.969	ENSORLG00000026571	-	94	69.318
ENSORLG00000030284	-	64	68.702	ENSORLG00000027074	-	81	69.565
ENSORLG00000030284	-	62	32.812	ENSORLG00000001833	hnrnpd	84	32.609
ENSORLG00000030284	-	66	53.371	ENSORLG00000008001	-	55	53.371
ENSORLG00000030284	-	70	69.466	ENSORLG00000024157	-	68	69.466
ENSORLG00000030284	-	70	69.466	ENSORLG00000023176	-	71	64.352
ENSORLG00000030284	-	58	30.928	ENSORLG00000003593	tardbp	58	30.928
ENSORLG00000030284	-	54	30.435	ENSORLG00000005188	tardbpl	57	30.435
ENSORLG00000030284	-	63	33.548	ENSORLG00000009671	msi2a	62	33.529

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000030284	-	63	67.257	ENSAOCG00000015951	-	96	68.944	Amphiprion_ocellaris
ENSORLG00000030284	-	66	53.846	ENSAOCG00000015914	-	66	59.563	Amphiprion_ocellaris
ENSORLG00000030284	-	63	67.257	ENSAPEG00000002274	-	96	68.944	Amphiprion_percula
ENSORLG00000030284	-	63	56.061	ENSAPEG00000002224	-	82	55.610	Amphiprion_percula
ENSORLG00000030284	-	63	56.818	ENSACLG00000008978	-	96	56.818	Astatotilapia_calliptera
ENSORLG00000030284	-	63	55.303	ENSCVAG00000008324	-	79	58.470	Cyprinodon_variegatus
ENSORLG00000030284	-	64	39.695	FBgn0001215	Hrb98DE	58	39.423	Drosophila_melanogaster
ENSORLG00000030284	-	72	37.405	FBgn0004237	Hrb87F	54	38.835	Drosophila_melanogaster
ENSORLG00000030284	-	81	33.333	ENSEBUG00000010003	-	84	33.333	Eptatretus_burgeri
ENSORLG00000030284	-	61	59.146	ENSELUG00000014407	-	98	59.146	Esox_lucius
ENSORLG00000030284	-	63	56.818	ENSHBUG00000023867	-	96	56.818	Haplochromis_burtoni
ENSORLG00000030284	-	63	53.077	ENSHCOG00000007180	-	87	51.220	Hippocampus_comes
ENSORLG00000030284	-	63	51.695	ENSLBEG00000006362	-	79	56.364	Labrus_bergylta
ENSORLG00000030284	-	63	52.174	ENSLOCG00000012121	-	68	56.800	Lepisosteus_oculatus
ENSORLG00000030284	-	63	55.303	ENSMAMG00000017728	-	99	46.442	Mastacembelus_armatus
ENSORLG00000030284	-	63	56.818	ENSMZEG00005001063	-	91	57.767	Maylandia_zebra
ENSORLG00000030284	-	63	63.158	ENSMMOG00000004242	-	98	66.049	Mola_mola
ENSORLG00000030284	-	69	40.183	ENSMEUG00000003051	-	72	39.640	Notamacropus_eugenii
ENSORLG00000030284	-	63	67.257	ENSORLG00020007084	-	77	69.136	Oryzias_latipes_hni
ENSORLG00000030284	-	70	65.414	ENSORLG00020006029	-	58	71.687	Oryzias_latipes_hni
ENSORLG00000030284	-	85	57.803	ENSORLG00020007171	-	100	57.803	Oryzias_latipes_hni
ENSORLG00000030284	-	69	68.354	ENSOMEG00000006327	-	70	68.354	Oryzias_melastigma
ENSORLG00000030284	-	75	58.647	ENSOMEG00000002000	-	79	58.647	Oryzias_melastigma
ENSORLG00000030284	-	59	59.627	ENSOMEG00000009566	-	83	59.627	Oryzias_melastigma
ENSORLG00000030284	-	71	56.115	ENSOMEG00000023475	-	76	56.115	Oryzias_melastigma
ENSORLG00000030284	-	69	59.574	ENSOMEG00000012368	-	79	50.694	Oryzias_melastigma
ENSORLG00000030284	-	84	57.463	ENSOMEG00000006903	-	79	57.463	Oryzias_melastigma
ENSORLG00000030284	-	73	58.209	ENSOMEG00000021030	-	76	58.209	Oryzias_melastigma
ENSORLG00000030284	-	74	61.111	ENSOMEG00000002084	-	71	61.111	Oryzias_melastigma
ENSORLG00000030284	-	74	59.398	ENSOMEG00000002509	-	83	57.692	Oryzias_melastigma
ENSORLG00000030284	-	66	53.147	ENSPREG00000010603	-	61	58.470	Poecilia_reticulata
ENSORLG00000030284	-	63	56.818	ENSPNYG00000020763	-	96	56.818	Pundamilia_nyererei
ENSORLG00000030284	-	59	54.701	ENSPNAG00000018051	-	81	57.055	Pygocentrus_nattereri
ENSORLG00000030284	-	66	47.857	ENSSHAG00000015609	-	96	47.393	Sarcophilus_harrisii
ENSORLG00000030284	-	73	59.394	ENSSDUG00000002394	-	87	59.394	Seriola_dumerili
ENSORLG00000030284	-	63	66.972	ENSSLDG00000024685	-	86	69.935	Seriola_lalandi_dorsalis