EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015000009 (Gene tree)
Gene ID: -
Gene Symbol: rif1
Alias: -
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 31162 bases
Position: chr21:992386-1023547
Accession: ZDB-GENE-030131-3406
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015000549	Rif1_N	PF12231.8	3.8e-81	1	1
ENSORLP00015021994	Rif1_N	PF12231.8	3.9e-81	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015014173	-	9639	-	ENSORLP00015000549	2255 (aa)	-	-
ENSORLT00015014152	-	9765	-	ENSORLP00015021994	2297 (aa)	-	-

Gene Model

Click here to download ENSORLG00015000009's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015000009's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015000009	rif1	66	48.175	ENSG00000080345	RIF1	97	51.707	Homo_sapiens
ENSORLG00015000009	rif1	99	64.425	ENSAPOG00000011073	rif1	94	64.286	Acanthochromis_polyacanthus
ENSORLG00015000009	rif1	68	48.165	ENSAMEG00000008461	RIF1	63	48.087	Ailuropoda_melanoleuca
ENSORLG00015000009	rif1	90	69.902	ENSACIG00000017765	rif1	99	63.111	Amphilophus_citrinellus
ENSORLG00015000009	rif1	99	64.928	ENSAOCG00000017231	rif1	95	65.134	Amphiprion_ocellaris
ENSORLG00015000009	rif1	87	72.335	ENSAPEG00000013228	rif1	89	70.777	Amphiprion_percula
ENSORLG00015000009	rif1	84	65.515	ENSATEG00000022887	rif1	99	62.222	Anabas_testudineus
ENSORLG00015000009	rif1	65	48.731	ENSAPLG00000007092	RIF1	68	48.978	Anas_platyrhynchos
ENSORLG00015000009	rif1	53	48.095	ENSACAG00000003714	RIF1	52	48.356	Anolis_carolinensis
ENSORLG00015000009	rif1	69	48.480	ENSANAG00000024840	RIF1	64	48.480	Aotus_nancymaae
ENSORLG00015000009	rif1	74	55.547	ENSAMXG00000010910	rif1	73	57.441	Astyanax_mexicanus
ENSORLG00015000009	rif1	60	48.829	ENSBTAG00000021020	RIF1	60	49.267	Bos_taurus
ENSORLG00015000009	rif1	66	48.909	ENSCJAG00000003138	RIF1	62	48.909	Callithrix_jacchus
ENSORLG00015000009	rif1	68	48.249	ENSCAFG00000005670	RIF1	61	48.171	Canis_familiaris
ENSORLG00015000009	rif1	68	48.249	ENSCAFG00020016401	RIF1	64	48.171	Canis_lupus_dingo
ENSORLG00015000009	rif1	69	46.889	ENSCHIG00000020327	RIF1	65	45.880	Capra_hircus
ENSORLG00015000009	rif1	66	46.290	ENSTSYG00000008861	RIF1	61	46.613	Carlito_syrichta
ENSORLG00015000009	rif1	57	38.438	ENSCAPG00000008957	RIF1	69	39.039	Cavia_aperea
ENSORLG00015000009	rif1	66	46.867	ENSCPOG00000037898	RIF1	64	46.130	Cavia_porcellus
ENSORLG00015000009	rif1	69	47.097	ENSCCAG00000024760	RIF1	64	47.097	Cebus_capucinus
ENSORLG00015000009	rif1	66	48.010	ENSCATG00000033353	RIF1	62	47.930	Cercocebus_atys
ENSORLG00015000009	rif1	65	49.133	ENSCLAG00000001517	RIF1	63	49.045	Chinchilla_lanigera
ENSORLG00015000009	rif1	66	48.089	ENSCSAG00000016089	RIF1	62	49.150	Chlorocebus_sabaeus
ENSORLG00015000009	rif1	63	45.249	ENSCHOG00000007187	RIF1	58	45.249	Choloepus_hoffmanni
ENSORLG00015000009	rif1	68	50.000	ENSCPBG00000025885	RIF1	70	49.759	Chrysemys_picta_bellii
ENSORLG00015000009	rif1	61	56.250	ENSCANG00000028962	RIF1	61	56.250	Colobus_angolensis_palliatus
ENSORLG00015000009	rif1	67	45.725	ENSCGRG00001024589	Rif1	64	47.026	Cricetulus_griseus_chok1gshd
ENSORLG00015000009	rif1	66	47.049	ENSCGRG00000010713	Rif1	63	48.406	Cricetulus_griseus_crigri
ENSORLG00015000009	rif1	96	52.411	ENSCSEG00000003945	rif1	99	52.462	Cynoglossus_semilaevis
ENSORLG00015000009	rif1	96	55.889	ENSCVAG00000022479	rif1	99	55.058	Cyprinodon_variegatus
ENSORLG00015000009	rif1	68	46.887	ENSDNOG00000011194	RIF1	61	46.887	Dasypus_novemcinctus
ENSORLG00015000009	rif1	68	44.737	ENSETEG00000012421	RIF1	63	44.657	Echinops_telfairi
ENSORLG00015000009	rif1	58	62.866	ENSEASG00005023434	RIF1	57	62.866	Equus_asinus_asinus
ENSORLG00015000009	rif1	63	55.689	ENSECAG00000012679	RIF1	61	55.689	Equus_caballus
ENSORLG00015000009	rif1	71	61.128	ENSELUG00000006826	rif1	64	60.169	Esox_lucius
ENSORLG00015000009	rif1	67	48.292	ENSFCAG00000029742	RIF1	62	48.372	Felis_catus
ENSORLG00015000009	rif1	67	48.190	ENSFDAG00000006538	RIF1	63	48.051	Fukomys_damarensis
ENSORLG00015000009	rif1	99	56.185	ENSFHEG00000013721	rif1	99	56.284	Fundulus_heteroclitus
ENSORLG00015000009	rif1	67	71.429	ENSGMOG00000003517	rif1	97	71.429	Gadus_morhua
ENSORLG00015000009	rif1	60	48.108	ENSGALG00000012484	RIF1	65	48.198	Gallus_gallus
ENSORLG00015000009	rif1	96	73.065	ENSGAFG00000017196	rif1	99	73.065	Gambusia_affinis
ENSORLG00015000009	rif1	68	49.197	ENSGAGG00000012595	RIF1	70	47.713	Gopherus_agassizii
ENSORLG00015000009	rif1	58	55.087	ENSGGOG00000040178	RIF1	57	55.087	Gorilla_gorilla
ENSORLG00015000009	rif1	99	57.661	ENSHBUG00000007125	rif1	99	58.579	Haplochromis_burtoni
ENSORLG00015000009	rif1	60	50.276	ENSHGLG00100009807	RIF1	61	50.276	Heterocephalus_glaber_male
ENSORLG00015000009	rif1	83	59.447	ENSHCOG00000015943	rif1	75	59.649	Hippocampus_comes
ENSORLG00015000009	rif1	67	62.358	ENSIPUG00000021703	rif1	64	62.229	Ictalurus_punctatus
ENSORLG00015000009	rif1	67	48.502	ENSSTOG00000020712	RIF1	62	49.120	Ictidomys_tridecemlineatus
ENSORLG00015000009	rif1	67	46.773	ENSJJAG00000023000	Rif1	64	46.656	Jaculus_jaculus
ENSORLG00015000009	rif1	99	55.430	ENSKMAG00000002852	rif1	99	56.362	Kryptolebias_marmoratus
ENSORLG00015000009	rif1	92	65.712	ENSLBEG00000023196	rif1	83	65.892	Labrus_bergylta
ENSORLG00015000009	rif1	68	52.191	ENSLACG00000005425	RIF1	76	45.521	Latimeria_chalumnae
ENSORLG00015000009	rif1	78	53.261	ENSLOCG00000002657	rif1	81	53.804	Lepisosteus_oculatus
ENSORLG00015000009	rif1	67	48.837	ENSLAFG00000009796	RIF1	63	48.757	Loxodonta_africana
ENSORLG00015000009	rif1	66	48.089	ENSMFAG00000032233	RIF1	62	48.010	Macaca_fascicularis
ENSORLG00015000009	rif1	66	48.089	ENSMMUG00000008611	RIF1	62	48.010	Macaca_mulatta
ENSORLG00015000009	rif1	66	48.323	ENSMNEG00000031616	RIF1	62	48.273	Macaca_nemestrina
ENSORLG00015000009	rif1	66	48.010	ENSMLEG00000042945	RIF1	62	47.930	Mandrillus_leucophaeus
ENSORLG00015000009	rif1	67	65.150	ENSMAMG00000001745	rif1	63	65.150	Mastacembelus_armatus
ENSORLG00015000009	rif1	96	70.440	ENSMZEG00005020920	rif1	99	70.627	Maylandia_zebra
ENSORLG00015000009	rif1	51	50.125	ENSMGAG00000012732	RIF1	53	50.000	Meleagris_gallopavo
ENSORLG00015000009	rif1	61	59.504	ENSMAUG00000013158	Rif1	61	59.504	Mesocricetus_auratus
ENSORLG00015000009	rif1	76	48.408	ENSMICG00000046127	RIF1	68	48.408	Microcebus_murinus
ENSORLG00015000009	rif1	67	45.433	ENSMOCG00000009381	Rif1	64	46.142	Microtus_ochrogaster
ENSORLG00015000009	rif1	99	51.388	ENSMMOG00000006519	rif1	99	51.649	Mola_mola
ENSORLG00015000009	rif1	69	48.397	ENSMODG00000003703	RIF1	66	49.400	Monodelphis_domestica
ENSORLG00015000009	rif1	77	66.189	ENSMALG00000016759	rif1	99	60.144	Monopterus_albus
ENSORLG00015000009	rif1	67	47.833	MGP_CAROLIEiJ_G0023555	Rif1	64	47.673	Mus_caroli
ENSORLG00015000009	rif1	67	47.725	ENSMUSG00000036202	Rif1	64	47.566	Mus_musculus
ENSORLG00015000009	rif1	67	45.974	MGP_PahariEiJ_G0025006	Rif1	63	45.894	Mus_pahari
ENSORLG00015000009	rif1	67	48.196	MGP_SPRETEiJ_G0024476	Rif1	64	48.157	Mus_spretus
ENSORLG00015000009	rif1	68	48.251	ENSMPUG00000000371	RIF1	63	48.251	Mustela_putorius_furo
ENSORLG00015000009	rif1	56	46.016	ENSMLUG00000003376	RIF1	59	45.916	Myotis_lucifugus
ENSORLG00015000009	rif1	68	48.773	ENSNGAG00000009268	Rif1	66	48.694	Nannospalax_galili
ENSORLG00015000009	rif1	99	54.107	ENSNBRG00000014257	rif1	99	56.473	Neolamprologus_brichardi
ENSORLG00015000009	rif1	69	47.563	ENSNLEG00000010955	RIF1	64	47.484	Nomascus_leucogenys
ENSORLG00015000009	rif1	66	45.719	ENSODEG00000003950	RIF1	63	45.950	Octodon_degus
ENSORLG00015000009	rif1	99	57.888	ENSONIG00000013657	rif1	100	58.095	Oreochromis_niloticus
ENSORLG00015000009	rif1	57	52.757	ENSOANG00000006078	-	55	52.662	Ornithorhynchus_anatinus
ENSORLG00015000009	rif1	68	47.319	ENSOCUG00000017435	RIF1	63	47.638	Oryctolagus_cuniculus
ENSORLG00015000009	rif1	100	96.910	ENSORLG00020001302	rif1	100	96.910	Oryzias_latipes_hni
ENSORLG00015000009	rif1	100	76.581	ENSOMEG00000021513	rif1	100	76.752	Oryzias_melastigma
ENSORLG00015000009	rif1	67	48.485	ENSOGAG00000006141	RIF1	62	48.325	Otolemur_garnettii
ENSORLG00015000009	rif1	69	47.652	ENSOARG00000008930	RIF1	64	47.576	Ovis_aries
ENSORLG00015000009	rif1	66	48.254	ENSPPAG00000023754	RIF1	62	48.254	Pan_paniscus
ENSORLG00015000009	rif1	67	48.292	ENSPPRG00000003618	RIF1	62	47.895	Panthera_pardus
ENSORLG00015000009	rif1	67	48.292	ENSPTIG00000020652	RIF1	62	47.895	Panthera_tigris_altaica
ENSORLG00015000009	rif1	66	47.096	ENSPTRG00000012534	RIF1	62	48.254	Pan_troglodytes
ENSORLG00015000009	rif1	66	48.089	ENSPANG00000008525	RIF1	62	48.010	Papio_anubis
ENSORLG00015000009	rif1	61	54.696	ENSPKIG00000004267	rif1	63	54.720	Paramormyrops_kingsleyae
ENSORLG00015000009	rif1	78	61.518	ENSPMGG00000016141	rif1	99	58.587	Periophthalmus_magnuspinnatus
ENSORLG00015000009	rif1	66	48.248	ENSPEMG00000000446	Rif1	63	48.329	Peromyscus_maniculatus_bairdii
ENSORLG00015000009	rif1	67	48.960	ENSPCIG00000009185	RIF1	64	48.839	Phascolarctos_cinereus
ENSORLG00015000009	rif1	99	56.910	ENSPFOG00000017804	rif1	99	57.363	Poecilia_formosa
ENSORLG00015000009	rif1	93	55.691	ENSPFOG00000000554	-	99	56.193	Poecilia_formosa
ENSORLG00015000009	rif1	94	67.788	ENSPLAG00000017945	rif1	98	67.788	Poecilia_latipinna
ENSORLG00015000009	rif1	89	55.049	ENSPMEG00000006897	-	99	55.375	Poecilia_mexicana
ENSORLG00015000009	rif1	90	73.886	ENSPREG00000018052	rif1	95	73.886	Poecilia_reticulata
ENSORLG00015000009	rif1	66	48.655	ENSPPYG00000012846	RIF1	62	48.576	Pongo_abelii
ENSORLG00015000009	rif1	66	47.850	ENSPCOG00000027888	RIF1	62	47.930	Propithecus_coquereli
ENSORLG00015000009	rif1	57	56.823	ENSPVAG00000014276	RIF1	56	56.823	Pteropus_vampyrus
ENSORLG00015000009	rif1	99	52.971	ENSPNYG00000012940	rif1	99	56.163	Pundamilia_nyererei
ENSORLG00015000009	rif1	74	56.397	ENSPNAG00000016685	rif1	77	55.859	Pygocentrus_nattereri
ENSORLG00015000009	rif1	61	49.228	ENSRNOG00000054901	Rif1	63	46.006	Rattus_norvegicus
ENSORLG00015000009	rif1	66	47.847	ENSRBIG00000003704	RIF1	62	48.722	Rhinopithecus_bieti
ENSORLG00015000009	rif1	67	47.902	ENSRROG00000028206	RIF1	62	48.837	Rhinopithecus_roxellana
ENSORLG00015000009	rif1	63	51.948	ENSSBOG00000029530	RIF1	61	51.948	Saimiri_boliviensis_boliviensis
ENSORLG00015000009	rif1	67	48.947	ENSSHAG00000018552	RIF1	64	48.905	Sarcophilus_harrisii
ENSORLG00015000009	rif1	68	61.340	ENSSFOG00015021539	rif1	91	57.485	Scleropages_formosus
ENSORLG00015000009	rif1	78	69.628	ENSSMAG00000011704	rif1	93	70.506	Scophthalmus_maximus
ENSORLG00015000009	rif1	99	54.587	ENSSDUG00000015632	rif1	99	54.695	Seriola_dumerili
ENSORLG00015000009	rif1	99	56.880	ENSSLDG00000019531	rif1	99	56.880	Seriola_lalandi_dorsalis
ENSORLG00015000009	rif1	68	49.368	ENSSPUG00000003062	RIF1	69	49.705	Sphenodon_punctatus
ENSORLG00015000009	rif1	66	69.305	ENSSPAG00000018359	rif1	91	69.305	Stegastes_partitus
ENSORLG00015000009	rif1	67	48.742	ENSSSCG00000016395	RIF1	62	49.561	Sus_scrofa
ENSORLG00015000009	rif1	88	63.232	ENSTRUG00000015808	rif1	97	71.865	Takifugu_rubripes
ENSORLG00015000009	rif1	74	62.319	ENSTNIG00000011538	rif1	99	52.249	Tetraodon_nigroviridis
ENSORLG00015000009	rif1	60	61.905	ENSTBEG00000016082	RIF1	54	50.713	Tupaia_belangeri
ENSORLG00015000009	rif1	68	48.098	ENSTTRG00000011190	RIF1	63	48.019	Tursiops_truncatus
ENSORLG00015000009	rif1	57	46.302	ENSUAMG00000026385	RIF1	59	46.206	Ursus_americanus
ENSORLG00015000009	rif1	68	47.615	ENSUMAG00000000337	RIF1	63	47.537	Ursus_maritimus
ENSORLG00015000009	rif1	67	48.265	ENSVPAG00000002162	RIF1	62	48.265	Vicugna_pacos
ENSORLG00015000009	rif1	70	48.430	ENSVVUG00000011293	RIF1	65	48.542	Vulpes_vulpes
ENSORLG00015000009	rif1	66	48.287	ENSXETG00000004530	rif1	65	48.910	Xenopus_tropicalis
ENSORLG00015000009	rif1	99	51.136	ENSXMAG00000000506	rif1	99	51.754	Xiphophorus_maculatus